Csa1G173160 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G173160
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	UPA24
Location	Chr1 : 10763873 .. 10764440 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCATTCTCCTTCTCCTTCTCCATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAACTAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTAGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTCGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAACAGATTATTTCTCACGATCAAATTTAAAAAACATACACTCAAAGTTTCTGCTTGTTCATTTTGTATATTCAAACTACCGATGAGTTAGTTCAGTGGAATAACACATGGATGCTCAATGCAAAAAATGGTTTGTAAATTGAATGTAATTCTTCAAATATTTTGTTTGAATCCTAATAGGTAAGTTCAGTAACGATATTTGGAATCAATGGTCACTTAAAAGGTAACCATGAAAATGAAATTTATAGTATCTGCCTC

mRNA sequence

ATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAACTAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTAGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTCGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA

Coding sequence (CDS)

ATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAACTAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTAGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTCGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA

Protein sequence

MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ*

Homology

[Close]

BLAST of Csa1G173160 vs. TrEMBL
Match: A0A0A0LYI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Csa1G173160 vs. TrEMBL
Match: A0A061GGG1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-21
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 1


Query: 1   MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
           MDI  K++Q++   T+    S +++  +Y APR L+IL +FWPLFAST V LV + AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
           G Q+ TE+HG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of Csa1G173160 vs. TrEMBL
Match: B9HD48_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01890g PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-20
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI  ++LQ++    +    SVVLSL +YAAPR ++ILA+FWPL ASTAV L+++  FGG
Sbjct: 1  MDIPERLLQYRHHFAIAITASVVLSLLLYAAPRLVTILAYFWPLLASTAVFLILILVFGG 60

Query: 61 GF-QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
              + T+ HG +AGEG+LDYVAG+PEN E   KY+
Sbjct: 61 TVTHMATDSHGEKAGEGLLDYVAGQPENVEQSQKYE 96

[Close]

BLAST of Csa1G173160 vs. TrEMBL
Match: A0A0B2S7V4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_015170 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI  K+LQ++  +T+   VS+  SL +YAAP FL+ILA+FWPLFAST V LV + AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLLLYAAPHFLAILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPE 87
            ++ TE HG +AGEG+L+YVAGR E
Sbjct: 61 VSKLSTEDHGEKAGEGLLNYVAGRAE 86

[Close]

BLAST of Csa1G173160 vs. TrEMBL
Match: I1L024_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G013000 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI  K+LQ++  +T+   VS+  SL +YAAP FL+ILA+FWPLFAST V LV + AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLLLYAAPHFLAILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPE 87
            ++ TE HG +AGEG+L+YVAGR E
Sbjct: 61 VSKLSTEDHGEKAGEGLLNYVAGRAE 86

[Close]

BLAST of Csa1G173160 vs. TAIR10
Match: AT4G16400.1 (AT4G16400.1 unknown protein)

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-17
Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 1   MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
           M+I AK+++++    V   VSV+++  VYAAPR L+ILA+FWPLFASTA  L +   FGG
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  GFQVGTEIHGMRAGEGILDYVAGRPENGENH 92
             Q+  E      GE ++DYVAGRPE+   +
Sbjct: 182 FQQLSEE----ATGERLMDYVAGRPEDSHKN 208

[Close]

BLAST of Csa1G173160 vs. TAIR10
Match: AT3G13175.1 (AT3G13175.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 6.3e-08
Identity = 34/91 (37.36%), Postives = 47/91 (51.65%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          M+   K+L+ K Q+     +S++    V  +P FL++L++FWPLF STA+ L  +  F  
Sbjct: 1  MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61 GFQV---GTEIHGMRAG-----EGILDYVAG 84
             +    T I G  AG     EGILDYV G
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVG 91

[Close]

BLAST of Csa1G173160 vs. NCBI nr
Match: gi|700209900|gb|KGN64996.1| (hypothetical protein Csa_1G173160 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 3.2e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Csa1G173160 vs. NCBI nr
Match: gi|659128598|ref|XP_008464280.1| (PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 4.3e-43
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI AK+LQHKDQ+TVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVG+EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Csa1G173160 vs. NCBI nr
Match: gi|590627047|ref|XP_007026343.1| (Uncharacterized protein TCM_030419 [Theobroma cacao])

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-21
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 1


Query: 1   MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
           MDI  K++Q++   T+    S +++  +Y APR L+IL +FWPLFAST V LV + AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
           G Q+ TE+HG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of Csa1G173160 vs. NCBI nr
Match: gi|224089775|ref|XP_002308811.1| (hypothetical protein POPTR_0006s01890g [Populus trichocarpa])

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-20
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI  ++LQ++    +    SVVLSL +YAAPR ++ILA+FWPL ASTAV L+++  FGG
Sbjct: 1  MDIPERLLQYRHHFAIAITASVVLSLLLYAAPRLVTILAYFWPLLASTAVFLILILVFGG 60

Query: 61 GF-QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
              + T+ HG +AGEG+LDYVAG+PEN E   KY+
Sbjct: 61 TVTHMATDSHGEKAGEGLLDYVAGQPENVEQSQKYE 96

[Close]

BLAST of Csa1G173160 vs. NCBI nr
Match: gi|734420416|gb|KHN40803.1| (hypothetical protein glysoja_015170 [Glycine soja])

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-19
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI  K+LQ++  +T+   VS+  SL +YAAP FL+ILA+FWPLFAST V LV + AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLLLYAAPHFLAILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPE 87
            ++ TE HG +AGEG+L+YVAGR E
Sbjct: 61 VSKLSTEDHGEKAGEGLLNYVAGRAE 86

The following BLAST results are available for this feature:

BLAST of Csa1G173160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYI8_CUCSA	2.2e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1	[more]
A0A061GGG1_THECC	3.3e-21	49.47	Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1	[more]
B9HD48_POPTR	2.8e-20	53.13	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01890g PE=4 SV=1	[more]
A0A0B2S7V4_GLYSO	1.4e-19	58.14	Uncharacterized protein OS=Glycine soja GN=glysoja_015170 PE=4 SV=1	[more]
I1L024_SOYBN	1.4e-19	58.14	Uncharacterized protein OS=Glycine max GN=GLYMA_09G013000 PE=4 SV=1	[more]

BLAST of Csa1G173160 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16400.1	1.9e-17	47.25	unknown protein	[more]
AT3G13175.1	6.3e-08	37.36	unknown protein	[more]

BLAST of Csa1G173160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209900\|gb\|KGN64996.1\|	3.2e-46	100.00	hypothetical protein Csa_1G173160 [Cucumis sativus]	[more]
gi\|659128598\|ref\|XP_008464280.1\|	4.3e-43	93.68	PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo]	[more]
gi\|590627047\|ref\|XP_007026343.1\|	4.7e-21	49.47	Uncharacterized protein TCM_030419 [Theobroma cacao]	[more]
gi\|224089775\|ref\|XP_002308811.1\|	4.0e-20	53.13	hypothetical protein POPTR_0006s01890g [Populus trichocarpa]	[more]
gi\|734420416\|gb\|KHN40803.1\|	2.0e-19	58.14	hypothetical protein glysoja_015170 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU092472	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G173160.1	Csa1G173160.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU092472	CU092472	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	FAMILY NOT NAMED	coord: 1..90 score: 1.4
None	No IPR available	PANTHER	PTHR34125:SF1	SUBFAMILY NOT NAMED	coord: 1..90 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G173160	Cla010973	Watermelon (97103) v1	cuwmB042
Csa1G173160	MELO3C026073	Melon (DHL92) v3.5.1	cumeB004
Csa1G173160	ClCG01G010960	Watermelon (Charleston Gray)	cuwcgB022
Csa1G173160	Lsi02G011570	Bottle gourd (USVL1VR-Ls)	culsiB032
Csa1G173160	MELO3C026073.2	Melon (DHL92) v3.6.1	cumedB016
Csa1G173160	Cla97C01G010690	Watermelon (97103) v2	cuwmbB009
Csa1G173160	CSPI01G15350	Wild cucumber (PI 183967)	cpicuB000
Csa1G173160	Cucsa.319360	Cucumber (Gy14) v1	cgycuB457
Csa1G173160	CmaCh18G006150	Cucurbita maxima (Rimu)	cmacuB399
Csa1G173160	Carg25601	Silver-seed gourd	carcuB0051

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G173160	Cucumber (Gy14) v2	cgybcuB001
Csa1G173160	Cucumber (Gy14) v2	cgybcuB240
Csa1G173160	Melon (DHL92) v3.6.1	cumedB024
Csa1G173160	Silver-seed gourd	carcuB0049
Csa1G173160	Watermelon (97103) v2	cuwmbB005
Csa1G173160	Watermelon (97103) v2	cuwmbB008
Csa1G173160	Wax gourd	cuwgoB036
Csa1G173160	Wax gourd	cuwgoB047
Csa1G173160	Cucumber (Chinese Long) v2	cucuB042
Csa1G173160	Cucumber (Gy14) v1	cgycuB016
Csa1G173160	Cucurbita maxima (Rimu)	cmacuB212
Csa1G173160	Cucurbita maxima (Rimu)	cmacuB210
Csa1G173160	Cucurbita maxima (Rimu)	cmacuB395
Csa1G173160	Cucurbita moschata (Rifu)	cmocuB199
Csa1G173160	Cucurbita moschata (Rifu)	cmocuB382
Csa1G173160	Melon (DHL92) v3.5.1	cumeB000
Csa1G173160	Watermelon (Charleston Gray)	cuwcgB019
Csa1G173160	Watermelon (Charleston Gray)	cuwcgB020
Csa1G173160	Watermelon (97103) v1	cuwmB048
Csa1G173160	Watermelon (97103) v1	cuwmB059
Csa1G173160	Cucurbita pepo (Zucchini)	cpecuB020
Csa1G173160	Cucurbita pepo (Zucchini)	cpecuB056
Csa1G173160	Bottle gourd (USVL1VR-Ls)	culsiB020
Csa1G173160	Bottle gourd (USVL1VR-Ls)	culsiB027
Csa1G173160	Bottle gourd (USVL1VR-Ls)	culsiB037