Lsi02G011570 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G011570
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_12
Location	chr02 : 13946960 .. 13947247 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATTCAAACAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGTCATTGTTTGTATATGCAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCCGTACTCTTGGTGGTAATGATCGCCTTTGGAGGCGGTTTCCAAGTCGGAACCGAAGTTCATGGTGTAAGAGCAGGTGAAGGGATTCTAGATTATGTCGCAGGACGACCTGAATATGGCGAAAACCACTATAAGTACCAATAA

mRNA sequence

ATGGACATTCAAACAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGTCATTGTTTGTATATGCAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCCGTACTCTTGGTGGTAATGATCGCCTTTGGAGGCGGTTTCCAAGTCGGAACCGAAGTTCATGGTGTAAGAGCAGGTGAAGGGATTCTAGATTATGTCGCAGGACGACCTGAATATGGCGAAAACCACTATAAGTACCAATAA

Coding sequence (CDS)

ATGGACATTCAAACAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGTCATTGTTTGTATATGCAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCCGTACTCTTGGTGGTAATGATCGCCTTTGGAGGCGGTTTCCAAGTCGGAACCGAAGTTCATGGTGTAAGAGCAGGTGAAGGGATTCTAGATTATGTCGCAGGACGACCTGAATATGGCGAAAACCACTATAAGTACCAATAA

Protein sequence

MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMIAFGGGFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ

Homology

[Close]

BLAST of Lsi02G011570 vs. TrEMBL
Match: A0A0A0LYI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-39
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMIAFGG 60
          MDI  KVLQHKDQ+TVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ 96
          GFQVGTE+HG+RAGEGILDYVAGRPE GENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Lsi02G011570 vs. TrEMBL
Match: A0A061GGG1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-20
Identity = 50/95 (52.63%), Postives = 70/95 (73.68%), Query Frame = 1


Query: 1   MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMIAFGG 60
           MDIQ K++Q++   T+    S +++  +Y APR L+IL +FWPLFAST V LV +IAFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ 96
           G Q+ TEVHG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of Lsi02G011570 vs. TrEMBL
Match: I1L024_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G013000 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-18
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMIAFGG 60
          MDI  K+LQ++  IT+   VS+  SL +YAAP FL+ILA+FWPLFAST V LV +IAFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLLLYAAPHFLAILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPE 87
            ++ TE HG +AGEG+L+YVAGR E
Sbjct: 61 VSKLSTEDHGEKAGEGLLNYVAGRAE 86

[Close]

BLAST of Lsi02G011570 vs. TrEMBL
Match: I1MFR0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G117900 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-18
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMIAFGG 60
          MDI  K+LQ++  IT+   VS+  SLF+YAAP FL+ILA+FWPLFAST V LV +IAFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLFLYAAPHFLTILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEY 88
            ++  E HG +AGEG+LDYVA R E+
Sbjct: 61 VSKLSNEDHGEKAGEGLLDYVAERTEH 87

[Close]

BLAST of Lsi02G011570 vs. TrEMBL
Match: D7T5G5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00220 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-18
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMIAFGG 60
          M+IQTK++Q++    +   VS++L+L    APRFL+ILA+FWPLF STAVLL+VMI FG 
Sbjct: 1  MEIQTKLMQYQYHFIITVVVSIILALLFQVAPRFLTILAYFWPLFVSTAVLLMVMIVFGQ 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPE 87
               TE+HG + GEG+LDYVAGRPE
Sbjct: 61 LSPPSTEIHGEKTGEGLLDYVAGRPE 86

[Close]

BLAST of Lsi02G011570 vs. TAIR10
Match: AT4G16400.1 (AT4G16400.1 unknown protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-15
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 1


Query: 1   MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMIAFGG 60
           M+IQ K+++++    V   VSV+++  VYAAPR L+ILA+FWPLFASTA  L + I FGG
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  GFQVGTEVHGVRAGEGILDYVAGRPE 87
             Q+  E      GE ++DYVAGRPE
Sbjct: 182 FQQLSEEA----TGERLMDYVAGRPE 203

[Close]

BLAST of Lsi02G011570 vs. TAIR10
Match: AT3G13175.1 (AT3G13175.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 5.8e-06
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMIAFGG 60
          M+ + K+L+ K QI     +S++    V  +P FL++L++FWPLF STA+ L  +  F  
Sbjct: 1  MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61 GFQV---GTEVHGVRAG-----EGILDYVAG 84
             +    T + G  AG     EGILDYV G
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVG 91

[Close]

BLAST of Lsi02G011570 vs. NCBI nr
Match: gi|700209900|gb|KGN64996.1| (hypothetical protein Csa_1G173160 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 2.9e-39
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMIAFGG 60
          MDI  KVLQHKDQ+TVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ 96
          GFQVGTE+HG+RAGEGILDYVAGRPE GENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Lsi02G011570 vs. NCBI nr
Match: gi|659128598|ref|XP_008464280.1| (PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 4.9e-39
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMIAFGG 60
          MDIQ K+LQHKDQITVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ 96
          GFQVG+E+HG+RAGEGILDYVAGRPE GENHYKYQ
Sbjct: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Lsi02G011570 vs. NCBI nr
Match: gi|590627047|ref|XP_007026343.1| (Uncharacterized protein TCM_030419 [Theobroma cacao])

HSP 1 Score: 105.1 bits (261), Expect = 6.7e-20
Identity = 50/95 (52.63%), Postives = 70/95 (73.68%), Query Frame = 1


Query: 1   MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMIAFGG 60
           MDIQ K++Q++   T+    S +++  +Y APR L+IL +FWPLFAST V LV +IAFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ 96
           G Q+ TEVHG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of Lsi02G011570 vs. NCBI nr
Match: gi|734420416|gb|KHN40803.1| (hypothetical protein glysoja_015170 [Glycine soja])

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-18
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMIAFGG 60
          MDI  K+LQ++  IT+   VS+  SL +YAAP FL+ILA+FWPLFAST V LV +IAFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLLLYAAPHFLAILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPE 87
            ++ TE HG +AGEG+L+YVAGR E
Sbjct: 61 VSKLSTEDHGEKAGEGLLNYVAGRAE 86

[Close]

BLAST of Lsi02G011570 vs. NCBI nr
Match: gi|297736712|emb|CBI25748.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-18
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMIAFGG 60
          M+IQTK++Q++    +   VS++L+L    APRFL+ILA+FWPLF STAVLL+VMI FG 
Sbjct: 1  MEIQTKLMQYQYHFIITVVVSIILALLFQVAPRFLTILAYFWPLFVSTAVLLMVMIVFGQ 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPE 87
               TE+HG + GEG+LDYVAGRPE
Sbjct: 61 LSPPSTEIHGEKTGEGLLDYVAGRPE 86

The following BLAST results are available for this feature:

BLAST of Lsi02G011570 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G011570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYI8_CUCSA	2.0e-39	92.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1	[more]
A0A061GGG1_THECC	4.6e-20	52.63	Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1	[more]
I1L024_SOYBN	3.3e-18	60.47	Uncharacterized protein OS=Glycine max GN=GLYMA_09G013000 PE=4 SV=1	[more]
I1MFR0_SOYBN	3.3e-18	59.77	Uncharacterized protein OS=Glycine max GN=GLYMA_15G117900 PE=4 SV=1	[more]
D7T5G5_VITVI	3.3e-18	58.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00220 PE=4 SV=...	[more]

BLAST of Lsi02G011570 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16400.1	1.1e-15	51.16	unknown protein	[more]
AT3G13175.1	5.8e-06	37.36	unknown protein	[more]

BLAST of Lsi02G011570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209900\|gb\|KGN64996.1\|	2.9e-39	92.63	hypothetical protein Csa_1G173160 [Cucumis sativus]	[more]
gi\|659128598\|ref\|XP_008464280.1\|	4.9e-39	91.58	PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo]	[more]
gi\|590627047\|ref\|XP_007026343.1\|	6.7e-20	52.63	Uncharacterized protein TCM_030419 [Theobroma cacao]	[more]
gi\|734420416\|gb\|KHN40803.1\|	4.8e-18	60.47	hypothetical protein glysoja_015170 [Glycine soja]	[more]
gi\|297736712\|emb\|CBI25748.3\|	4.8e-18	58.14	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G011570.1	Lsi02G011570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	FAMILY NOT NAMED	coord: 1..86 score: 4.7
None	No IPR available	PANTHER	PTHR34125:SF1	SUBFAMILY NOT NAMED	coord: 1..86 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G011570	Csa1G173160	Cucumber (Chinese Long) v2	culsiB032
Lsi02G011570	CSPI01G15350	Wild cucumber (PI 183967)	cpilsiB033
Lsi02G011570	Cucsa.319360	Cucumber (Gy14) v1	cgylsiB521
Lsi02G011570	CmaCh18G006150	Cucurbita maxima (Rimu)	cmalsiB369
Lsi02G011570	CmoCh18G005770	Cucurbita moschata (Rifu)	cmolsiB359
Lsi02G011570	Cla010973	Watermelon (97103) v1	lsiwmB203
Lsi02G011570	MELO3C026073	Melon (DHL92) v3.5.1	lsimeB176
Lsi02G011570	ClCG01G010960	Watermelon (Charleston Gray)	lsiwcgB169
Lsi02G011570	MELO3C026073.2	Melon (DHL92) v3.6.1	lsimedB186
Lsi02G011570	Cla97C01G010690	Watermelon (97103) v2	lsiwmbB153
Lsi02G011570	Cp4.1LG09g06440	Cucurbita pepo (Zucchini)	cpelsiB027
Lsi02G011570	Carg25601	Silver-seed gourd	carlsiB046
Lsi02G011570	CsaV3_1G015520	Cucumber (Chinese Long) v3	cuclsiB044

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G011570	Wax gourd	lsiwgoB257
Lsi02G011570	Bottle gourd (USVL1VR-Ls)	lsilsiB065
Lsi02G011570	Cucumber (Gy14) v1	cgylsiB302
Lsi02G011570	Cucumber (Gy14) v1	cgylsiB522
Lsi02G011570	Cucurbita maxima (Rimu)	cmalsiB207
Lsi02G011570	Cucurbita moschata (Rifu)	cmolsiB197
Lsi02G011570	Cucurbita moschata (Rifu)	cmolsiB357
Lsi02G011570	Cucurbita moschata (Rifu)	cmolsiB594
Lsi02G011570	Cucurbita pepo (Zucchini)	cpelsiB010
Lsi02G011570	Cucurbita pepo (Zucchini)	cpelsiB060
Lsi02G011570	Cucurbita pepo (Zucchini)	cpelsiB417
Lsi02G011570	Wild cucumber (PI 183967)	cpilsiB027
Lsi02G011570	Wild cucumber (PI 183967)	cpilsiB038
Lsi02G011570	Wild cucumber (PI 183967)	cpilsiB448
Lsi02G011570	Cucumber (Chinese Long) v2	culsiB027
Lsi02G011570	Cucumber (Chinese Long) v2	culsiB037
Lsi02G011570	Cucumber (Chinese Long) v2	culsiB441
Lsi02G011570	Melon (DHL92) v3.5.1	lsimeB184
Lsi02G011570	Melon (DHL92) v3.5.1	lsimeB231
Lsi02G011570	Watermelon (Charleston Gray)	lsiwcgB178
Lsi02G011570	Watermelon (Charleston Gray)	lsiwcgB174
Lsi02G011570	Watermelon (97103) v1	lsiwmB208
Lsi02G011570	Watermelon (97103) v1	lsiwmB205
Lsi02G011570	Cucumber (Gy14) v2	cgyblsiB029
Lsi02G011570	Cucumber (Gy14) v2	cgyblsiB023
Lsi02G011570	Cucumber (Gy14) v2	cgyblsiB038
Lsi02G011570	Melon (DHL92) v3.6.1	lsimedB184
Lsi02G011570	Melon (DHL92) v3.6.1	lsimedB193
Lsi02G011570	Cucumber (Chinese Long) v3	cuclsiB027
Lsi02G011570	Cucumber (Chinese Long) v3	cuclsiB033
Lsi02G011570	Watermelon (97103) v2	lsiwmbB159