CmoCh13G003950 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr13 : 4964527 .. 4966339 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACTGCATTGTCTTGCCTTGTGTTCGGTCGCCACAGAAGAAGCTCCGAGGTATCGAAAAAGCCACTGATTTGGCTACAACGGTCGATTCTGCCACCGAATGCTGTAATGACCGTCTTCTCCATGATTTTTCTTCTTCAACAAGAACCAGCCTCCAAGTTGGGGAGGTTCGAGATGTTGTTCCATGCCTGAAAGAGCTCGAAAAGCTTCTGGTTTCCTCGAAGATAGTGTACTCGGATGGAGCGGGAGCGAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTAAATTGCTGTTAGCAAATGCTAAGAAGTTGCAATCTCGACATAGATTGTTCGGCTATACAAGCCCCCGTAGAGAGTGTCGAAAATGGCGACCGACGTTGTCTGCAATCTCAGAAGAAAAGGGTTTTTGAATGGAGTCTTAGAGGGAAACTTGTGTAGCTTTACAGAGATAATGGAGATTAAGTTGAACTTCAAGCTTCATTTGTAGGAATCTGGCAAGCAAATGATCTTACAAAGGCAAAACTACAAGCGCAGAAAGGAAAGGAGAGAAATTACTAATACAAACTTTTTTTTGGGTTGCAAAACTCAATTTTGAGAAATTTTTTTGGGGTTCTTTTTTGAACTAGATTTGAAAATTCGCCCCAGTACGTCAGTACTATAGGGAGATGCGACCAGCCGTCAACTCCTTCCACCTAGATTTTATATGACCGTTCGGCGAAATTACGACTAGGTCTGTAGACTTGAATCGCCTCAAAATGCAGAGGATGTGACTAATTGTCAAATTCTCCCTACCCGAAAAGTTACATGCTATGCTATTTAAGTTGTTGTGTTGCTTTTGCTTATCATATAACATTGTTTTCGGTCTCTCAATCTTGCTTTCAAACTCTTTTTCAAAATCTCTCTGCCCCATTTTCTAAAACCTTCACAAAACGAGACTAGAGAGGCTTGAGCATACTTTGCCAGACCATAGATAACGCAATCCTAATTGCAATCCTAATTTAGCTTGAGTCAGCAACACAGGATTATGACACTTAGTATCAATGGAAACCCATTATTAATGCCAATCCTTCTTGATTTACAATTCAAAAGCAGAATAATCATACTGTTTATTACTCTAAATTGTTCTTTGATTGAGCAAAGGATTAGATATACACAAGAAGAGAAAAGATGTCATTCTTTTCCTCAATAATACCCAGCAATCCATATGGAAATAAAGTGATTACTTCTCTGAAGGGACAAGGCAACCGACCAATCAAGCAAACAGACAGCAATCTGATCAAGCATCCTTGTCCCCACGTTTCCAGTTGTTCCCTGTCTTTTTGACTCATTAACCCCTCTGTCTCCCCCTCTCCTTCAACTCCCCCACAAAAATATCTACTGACTGTACAAGGGTATTTCAGTATTTTCACAATAACGGACTATATGCAAAATAAGAAGCTGATGAACCAAGTTTTGAAACTCATGATCAATACAATGTTTTGCAGTAAAGCATCATCATCACTCATAGCCATTCCTCTCTGTTTCTGTTTCTCAATCTCCATGGACGTTCAAACAAAGGTTCTCCAAAACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGACATTGTTTCTAGCGTTCTTTTGGCTTCTCTTTGCCTCCACAGCTGCACTCTTGGTCGGAATGATCGCTGCCTTTCCAGGTGGTTTCCAAGTTGGAACCGAAATTCATGGTGTAAGAGCAGCAGGTGAAGGGATCCTAGATTATGTTGCAGGACGACCTGAATATGGCAAAAACCACTATAAGTACCGGTAA

mRNA sequence

ATGGGAAACTGCATTGTCTTGCCTTGTGTTCGGTCGCCACAGAAGAAGCTCCGAGGTATCGAAAAAGCCACTGATTTGGCTACAACGGTCGATTCTGCCACCGAATGCTGTAATGACCGTCTTCTCCATGATTTTTCTTCTTCAACAAGAACCAGCCTCCAAGTTGGGGAGGTTCGAGATGTTGTTCCATGCCTGAAAGAGCTCGAAAAGCTTCTGGTTTCCTCGAAGATAGTGTACTCGGATGGAGCGGGAGCGAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTAAATTGCTTATTTTCACAATAACGGACTATATGCAAAATAAGAAGCTGATGAACCAAGTTTTGAAACTCATGATCAATACAATGTTTTGCAGTAAAGCATCATCATCACTCATAGCCATTCCTCTCTGTTTCTGTTTCTCAATCTCCATGGACGTTCAAACAAAGGTTCTCCAAAACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGACATTGTTTCTAGCGTTCTTTTGGCTTCTCTTTGCCTCCACAGCTGCACTCTTGGTCGGAATGATCGCTGCCTTTCCAGGTGGTTTCCAAGTTGGAACCGAAATTCATGGTGTAAGAGCAGCAGGTGAAGGGATCCTAGATTATGTTGCAGGACGACCTGAATATGGCAAAAACCACTATAAGTACCGGTAA

Coding sequence (CDS)

ATGGGAAACTGCATTGTCTTGCCTTGTGTTCGGTCGCCACAGAAGAAGCTCCGAGGTATCGAAAAAGCCACTGATTTGGCTACAACGGTCGATTCTGCCACCGAATGCTGTAATGACCGTCTTCTCCATGATTTTTCTTCTTCAACAAGAACCAGCCTCCAAGTTGGGGAGGTTCGAGATGTTGTTCCATGCCTGAAAGAGCTCGAAAAGCTTCTGGTTTCCTCGAAGATAGTGTACTCGGATGGAGCGGGAGCGAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTAAATTGCTTATTTTCACAATAACGGACTATATGCAAAATAAGAAGCTGATGAACCAAGTTTTGAAACTCATGATCAATACAATGTTTTGCAGTAAAGCATCATCATCACTCATAGCCATTCCTCTCTGTTTCTGTTTCTCAATCTCCATGGACGTTCAAACAAAGGTTCTCCAAAACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGACATTGTTTCTAGCGTTCTTTTGGCTTCTCTTTGCCTCCACAGCTGCACTCTTGGTCGGAATGATCGCTGCCTTTCCAGGTGGTTTCCAAGTTGGAACCGAAATTCATGGTGTAAGAGCAGCAGGTGAAGGGATCCTAGATTATGTTGCAGGACGACCTGAATATGGCAAAAACCACTATAAGTACCGGTAA
Homology
[Close]
BLAST of CmoCh13G003950 vs. TrEMBL
Match: A0A0A0LSY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173150 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.8e-34
Identity = 84/116 (72.41%), Postives = 94/116 (81.03%), Query Frame = 1 

Query: 1   MGNCIVLPCVRSPQKKLRGIEKATDLATT-VDSATECCNDRLLHDFSSSTRTSLQVGEVR 60
           MGNCIVLP VRSPQKKLRG++KAT+LATT V SATEC ND LL DF SST+TSLQV EVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  DVVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLIFTITDYMQNKKLMN 116
           +VVPCLKELE LL S KIVYSD AGA+KVKIVVTKEQFKLL+          +L++
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLS 116

[Close]
BLAST of CmoCh13G003950 vs. TrEMBL
Match: A0A0A0LYI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 70/97 (72.16%), Postives = 77/97 (79.38%), Query Frame = 1 

Query: 147 MDVQTKVLQNKDQITVVAAVSVVLTLF----------LAFFWLLFASTAALLVGMIAAFP 206
           MD+  KVLQ+KDQ+TVVAAVSVVL+LF          LAFFW LFASTA LLV M  AF 
Sbjct: 1   MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVM-NAFG 60

Query: 207 GGFQVGTEIHGVRAAGEGILDYVAGRPEYGKNHYKYR 234
           GGFQVGTEIHG+R AGEGILDYVAGRPE G+NHYKY+
Sbjct: 61  GGFQVGTEIHGMR-AGEGILDYVAGRPENGENHYKYQ 95

[Close]
BLAST of CmoCh13G003950 vs. TrEMBL
Match: A0A061GGG1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.0e-07
Identity = 38/97 (39.18%), Postives = 57/97 (58.76%), Query Frame = 1 

Query: 146 SMDVQTKVLQNKDQITVVAAVSVVLTLFL----------AFFWLLFASTAALLVGMIAAF 205
           +MD+Q K++Q +   T+    S ++   L           +FW LFAST   LV +IA F
Sbjct: 89  AMDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIA-F 148

Query: 206 PGGFQVGTEIHGVRAAGEGILDYVAGRPEYGKNHYKY 233
            GG Q+ TE+HG + AG+G++DYVA RPE+ +   K+
Sbjct: 149 GGGSQLATEVHGEK-AGQGLMDYVAARPEHAEEAQKF 183

[Close]
BLAST of CmoCh13G003950 vs. TrEMBL
Match: D7T5G5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00220 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.4e-06
Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 1 

Query: 147 MDVQTKVLQNKDQITVVAAVSVVLTLF----------LAFFWLLFASTAALLVGMIAAFP 206
           M++QTK++Q +    +   VS++L L           LA+FW LF STA LL+ MI  F 
Sbjct: 1   MEIQTKLMQYQYHFIITVVVSIILALLFQVAPRFLTILAYFWPLFVSTAVLLMVMIV-FG 60

Query: 207 GGFQVGTEIHGVRAAGEGILDYVAGRPE 225
                 TEIHG +  GEG+LDYVAGRPE
Sbjct: 61  QLSPPSTEIHGEKT-GEGLLDYVAGRPE 86

[Close]
BLAST of CmoCh13G003950 vs. NCBI nr
Match: gi|700209899|gb|KGN64995.1| (hypothetical protein Csa_1G173150 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 4.0e-34
Identity = 84/116 (72.41%), Postives = 94/116 (81.03%), Query Frame = 1 

Query: 1   MGNCIVLPCVRSPQKKLRGIEKATDLATT-VDSATECCNDRLLHDFSSSTRTSLQVGEVR 60
           MGNCIVLP VRSPQKKLRG++KAT+LATT V SATEC ND LL DF SST+TSLQV EVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  DVVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLIFTITDYMQNKKLMN 116
           +VVPCLKELE LL S KIVYSD AGA+KVKIVVTKEQFKLL+          +L++
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLS 116

[Close]
BLAST of CmoCh13G003950 vs. NCBI nr
Match: gi|659128598|ref|XP_008464280.1| (PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 2.4e-23
Identity = 70/97 (72.16%), Postives = 78/97 (80.41%), Query Frame = 1 

Query: 147 MDVQTKVLQNKDQITVVAAVSVVLTLF----------LAFFWLLFASTAALLVGMIAAFP 206
           MD+Q K+LQ+KDQITVVAAVSVVL+LF          LAFFW LFASTA LLV M  AF 
Sbjct: 1   MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVM-TAFG 60

Query: 207 GGFQVGTEIHGVRAAGEGILDYVAGRPEYGKNHYKYR 234
           GGFQVG+EIHG+R AGEGILDYVAGRPE G+NHYKY+
Sbjct: 61  GGFQVGSEIHGMR-AGEGILDYVAGRPENGENHYKYQ 95

[Close]
BLAST of CmoCh13G003950 vs. NCBI nr
Match: gi|700209900|gb|KGN64996.1| (hypothetical protein Csa_1G173160 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 4.2e-23
Identity = 70/97 (72.16%), Postives = 77/97 (79.38%), Query Frame = 1 

Query: 147 MDVQTKVLQNKDQITVVAAVSVVLTLF----------LAFFWLLFASTAALLVGMIAAFP 206
           MD+  KVLQ+KDQ+TVVAAVSVVL+LF          LAFFW LFASTA LLV M  AF 
Sbjct: 1   MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVM-NAFG 60

Query: 207 GGFQVGTEIHGVRAAGEGILDYVAGRPEYGKNHYKYR 234
           GGFQVGTEIHG+R AGEGILDYVAGRPE G+NHYKY+
Sbjct: 61  GGFQVGTEIHGMR-AGEGILDYVAGRPENGENHYKYQ 95

[Close]
BLAST of CmoCh13G003950 vs. NCBI nr
Match: gi|590627047|ref|XP_007026343.1| (Uncharacterized protein TCM_030419 [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 7.1e-07
Identity = 38/97 (39.18%), Postives = 57/97 (58.76%), Query Frame = 1 

Query: 146 SMDVQTKVLQNKDQITVVAAVSVVLTLFL----------AFFWLLFASTAALLVGMIAAF 205
           +MD+Q K++Q +   T+    S ++   L           +FW LFAST   LV +IA F
Sbjct: 89  AMDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIA-F 148

Query: 206 PGGFQVGTEIHGVRAAGEGILDYVAGRPEYGKNHYKY 233
            GG Q+ TE+HG + AG+G++DYVA RPE+ +   K+
Sbjct: 149 GGGSQLATEVHGEK-AGQGLMDYVAARPEHAEEAQKF 183

[Close]
BLAST of CmoCh13G003950 vs. NCBI nr
Match: gi|922521824|ref|XP_013595050.1| (PREDICTED: uncharacterized protein LOC106303279 [Brassica oleracea var. oleracea])

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 57/171 (33.33%), Postives = 88/171 (51.46%), Query Frame = 1 

Query: 86  RKVKIVVTKEQFKLLIFTITD---------YMQNKKLMNQVLKLMINTMFCSKASSSLIA 145
           R++KI++T++Q +LL+    +         Y   K+     L+ ++     S +S +   
Sbjct: 36  RRIKIILTRKQLELLLLNSAEGVSSKLPKTYGSCKRKWKPSLQTIVEKPSQSPSSQAAFI 95

Query: 146 IPLCFCFSISMD-----VQTKVLQNKDQITVVAAVSVVLTLF----------LAFFWLLF 205
           I L F  S+S+D     +Q ++++ K  + +   V VVL+            LA+FW LF
Sbjct: 96  IVLSFNISLSLDQQEMEIQARLMEYKFHVMITIIVIVVLSSLVYAAPRILDILAYFWPLF 155

Query: 206 ASTAALLVGMIAAFPGGFQVGTEIHGVRAAGEGILDYVAGRPEYGKNHYKY 233
           ASTAA L   I +  GGFQ  ++     A GEGI+DYVAGRPE   + YKY
Sbjct: 156 ASTAAFLAMAITS--GGFQQLSD----EATGEGIMDYVAGRPE---DSYKY 197

The following BLAST results are available for this feature:
BLAST of CmoCh13G003950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh13G003950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSY9_CUCSA2.8e-3472.41Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173150 PE=4 SV=1[more]
A0A0A0LYI8_CUCSA2.9e-2372.16Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1[more]
A0A061GGG1_THECC5.0e-0739.18Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1[more]
D7T5G5_VITVI9.4e-0645.45Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00220 PE=4 SV=... [more]
BLAST of CmoCh13G003950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh13G003950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209899|gb|KGN64995.1|4.0e-3472.41hypothetical protein Csa_1G173150 [Cucumis sativus][more]
gi|659128598|ref|XP_008464280.1|2.4e-2372.16PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo][more]
gi|700209900|gb|KGN64996.1|4.2e-2372.16hypothetical protein Csa_1G173160 [Cucumis sativus][more]
gi|590627047|ref|XP_007026343.1|7.1e-0739.18Uncharacterized protein TCM_030419 [Theobroma cacao][more]
gi|922521824|ref|XP_013595050.1|1.6e-0633.33PREDICTED: uncharacterized protein LOC106303279 [Brassica oleracea var. oleracea... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003950.1CmoCh13G003950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34125FAMILY NOT NAMEDcoord: 139..224
score: 7.7
NoneNo IPR availablePANTHERPTHR34125:SF1SUBFAMILY NOT NAMEDcoord: 139..224
score: 7.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh13G003950CmaCh13G003630Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G003950CmaCh18G006150Cucurbita maxima (Rimu)cmacmoB398
CmoCh13G003950Cla010974Watermelon (97103) v1cmowmB193
CmoCh13G003950ClCG01G010960Watermelon (Charleston Gray)cmowcgB175
CmoCh13G003950Lsi02G011560Bottle gourd (USVL1VR-Ls)cmolsiB197
CmoCh13G003950Cp4.1LG00g01800Cucurbita pepo (Zucchini)cmocpeB180
CmoCh13G003950Cp4.1LG09g06400Cucurbita pepo (Zucchini)cmocpeB182
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh13G003950CmoCh18G005770Cucurbita moschata (Rifu)cmocmoB168
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003950Cucumber (Chinese Long) v3cmocucB0228
CmoCh13G003950Watermelon (97103) v2cmowmbB200
CmoCh13G003950Wax gourdcmowgoB0255
CmoCh13G003950Wild cucumber (PI 183967)cmocpiB200
CmoCh13G003950Cucumber (Chinese Long) v2cmocuB196
CmoCh13G003950Melon (DHL92) v3.5.1cmomeB182
CmoCh13G003950Cucumber (Gy14) v2cgybcmoB065
CmoCh13G003950Silver-seed gourdcarcmoB1323