Cp4.1LG00g01800 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG00g01800
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG00 : 4149730 .. 4150149 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACTGCATTGTCTTGCCTTGTGTTCGGTCGCCACAGAAGAAGCTCCGAGGTATCGAAAAAGCCACTGATTTGGCTACAACAGTCGATTCGGCCATCGAATGCTGTAATGACCGTCTTCTCCATGATTTTTCTTCTTCAACAAGAACCAGCCTCCAAGTTGGGGAGGTTCGAGATGTTGTTCCATGCCTGAAAGAGCTCGAAAAACTGCTGGTTTCCTCGAAGATAGCGTACTCGGATGGAGCGGGAGCGAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTAAGTTGCTGTTGGAAAATGCAAAGAAGTTGCAATCTCGTCATAGATTGTTCGGCTACACAAGCCCCCGTACAGAGTGTCGAAAATGGCGACCAACGCTGTCTGCAATCTCAGAAGAAAAGGGTTTTTGA

mRNA sequence

ATGGGAAACTGCATTGTCTTGCCTTGTGTTCGGTCGCCACAGAAGAAGCTCCGAGGTATCGAAAAAGCCACTGATTTGGCTACAACAGTCGATTCGGCCATCGAATGCTGTAATGACCGTCTTCTCCATGATTTTTCTTCTTCAACAAGAACCAGCCTCCAAGTTGGGGAGGTTCGAGATGTTGTTCCATGCCTGAAAGAGCTCGAAAAACTGCTGGTTTCCTCGAAGATAGCGTACTCGGATGGAGCGGGAGCGAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTAAGTTGCTGTTGGAAAATGCAAAGAAGTTGCAATCTCGTCATAGATTGTTCGGCTACACAAGCCCCCGTACAGAGTGTCGAAAATGGCGACCAACGCTGTCTGCAATCTCAGAAGAAAAGGGTTTTTGA

Coding sequence (CDS)

ATGGGAAACTGCATTGTCTTGCCTTGTGTTCGGTCGCCACAGAAGAAGCTCCGAGGTATCGAAAAAGCCACTGATTTGGCTACAACAGTCGATTCGGCCATCGAATGCTGTAATGACCGTCTTCTCCATGATTTTTCTTCTTCAACAAGAACCAGCCTCCAAGTTGGGGAGGTTCGAGATGTTGTTCCATGCCTGAAAGAGCTCGAAAAACTGCTGGTTTCCTCGAAGATAGCGTACTCGGATGGAGCGGGAGCGAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTAAGTTGCTGTTGGAAAATGCAAAGAAGTTGCAATCTCGTCATAGATTGTTCGGCTACACAAGCCCCCGTACAGAGTGTCGAAAATGGCGACCAACGCTGTCTGCAATCTCAGAAGAAAAGGGTTTTTGA

Protein sequence

MGNCIVLPCVRSPQKKLRGIEKATDLATTVDSAIECCNDRLLHDFSSSTRTSLQVGEVRDVVPCLKELEKLLVSSKIAYSDGAGARKVKIVVTKEQFKLLLENAKKLQSRHRLFGYTSPRTECRKWRPTLSAISEEKGF
Homology
[Close]
BLAST of Cp4.1LG00g01800 vs. TrEMBL
Match: A0A0A0LSY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173150 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 7.4e-51
Identity = 109/140 (77.86%), Postives = 117/140 (83.57%), Query Frame = 1 

Query: 1   MGNCIVLPCVRSPQKKLRGIEKATDLATT-VDSAIECCNDRLLHDFSSSTRTSLQVGEVR 60
           MGNCIVLP VRSPQKKLRG++KAT+LATT V SA EC ND LL DF SST+TSLQV EVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  DVVPCLKELEKLLVSSKIAYSDGAGARKVKIVVTKEQFKLLLENAKKLQSRHRLFGYTSP 120
           +VVPCLKELE LL S KI YSD AGA+KVKIVVTKEQFKLLL NAKKLQ RHRL  YT P
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RTECRKWRPTLSAISEEKGF 140
           R  C+ WRPTLSAISEE+ F
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

[Close]
BLAST of Cp4.1LG00g01800 vs. TrEMBL
Match: B9HD50_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-06
Identity = 37/90 (41.11%), Postives = 56/90 (62.22%), Query Frame = 1 

Query: 51  TSLQVGEVRDVVPCLKELEKLLVSSKIAYSDGAGARKVKIVVTKEQFKLLLENAKKLQSR 110
           T L+ G V  ++P L +  +L VSSK+A  +   +RKVKIVVT++Q +LLL N+K+ +S+
Sbjct: 61  TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120

Query: 111 HRLFGYTSPRTEC-RKWRPTLSAISEEKGF 140
                ++    E  RKWRP+L  I E + F
Sbjct: 121 GIAVRFSESFKEGERKWRPSLVTIPEVQKF 150

[Close]
BLAST of Cp4.1LG00g01800 vs. NCBI nr
Match: gi|700209899|gb|KGN64995.1| (hypothetical protein Csa_1G173150 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 1.1e-50
Identity = 109/140 (77.86%), Postives = 117/140 (83.57%), Query Frame = 1 

Query: 1   MGNCIVLPCVRSPQKKLRGIEKATDLATT-VDSAIECCNDRLLHDFSSSTRTSLQVGEVR 60
           MGNCIVLP VRSPQKKLRG++KAT+LATT V SA EC ND LL DF SST+TSLQV EVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  DVVPCLKELEKLLVSSKIAYSDGAGARKVKIVVTKEQFKLLLENAKKLQSRHRLFGYTSP 120
           +VVPCLKELE LL S KI YSD AGA+KVKIVVTKEQFKLLL NAKKLQ RHRL  YT P
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RTECRKWRPTLSAISEEKGF 140
           R  C+ WRPTLSAISEE+ F
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

[Close]
BLAST of Cp4.1LG00g01800 vs. NCBI nr
Match: gi|224089779|ref|XP_002308812.1| (hypothetical protein POPTR_0006s01910g [Populus trichocarpa])

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-06
Identity = 37/90 (41.11%), Postives = 56/90 (62.22%), Query Frame = 1 

Query: 51  TSLQVGEVRDVVPCLKELEKLLVSSKIAYSDGAGARKVKIVVTKEQFKLLLENAKKLQSR 110
           T L+ G V  ++P L +  +L VSSK+A  +   +RKVKIVVT++Q +LLL N+K+ +S+
Sbjct: 61  TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120

Query: 111 HRLFGYTSPRTEC-RKWRPTLSAISEEKGF 140
                ++    E  RKWRP+L  I E + F
Sbjct: 121 GIAVRFSESFKEGERKWRPSLVTIPEVQKF 150

The following BLAST results are available for this feature:
BLAST of Cp4.1LG00g01800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG00g01800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSY9_CUCSA7.4e-5177.86Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173150 PE=4 SV=1[more]
B9HD50_POPTR2.5e-0641.11Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1[more]
BLAST of Cp4.1LG00g01800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG00g01800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209899|gb|KGN64995.1|1.1e-5077.86hypothetical protein Csa_1G173150 [Cucumis sativus][more]
gi|224089779|ref|XP_002308812.1|3.6e-0641.11hypothetical protein POPTR_0006s01910g [Populus trichocarpa][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g01800.1Cp4.1LG00g01800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG00g01800CmaCh13G003630Cucurbita maxima (Rimu)cmacpeB209
Cp4.1LG00g01800CmoCh13G003950Cucurbita moschata (Rifu)cmocpeB180
Cp4.1LG00g01800Cla010974Watermelon (97103) v1cpewmB015
Cp4.1LG00g01800ClCG01G010970Watermelon (Charleston Gray)cpewcgB007
Cp4.1LG00g01800Lsi02G011560Bottle gourd (USVL1VR-Ls)cpelsiB010
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG00g01800Melon (DHL92) v3.5.1cpemeB004
Cp4.1LG00g01800Silver-seed gourdcarcpeB1370
Cp4.1LG00g01800Cucurbita maxima (Rimu)cmacpeB413