Cla010974 (gene) Watermelon (97103) v1

Overview
NameCla010974
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 18597688 .. 18598077 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACTGCGTGGTCTTGCCTTGCGTCCGGTCGCCGCAGAAGAATCTTAGAGGGCTCGAGAAAGCCACTGATTCAGCTACAACTGTTGTTGAGTCTGCTACAGAGTGCGGTAATAATTTTACTTCTACAACCAGAACCAGCCTCCAAGTTGGCGAATGCTTGAAAGAGCTCGAAAATCTTCTGGCTTCCTCAAAGATAGCCTACTCGGATGGAGGGGGAGCAAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTGAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAAGCTCGACATAGATTGTTGAGCTATACAGTCCCCCGTAGAGGGTGTCAAAAATGGCGGCCGATTTTGTCTGCAATCGCGGAGGAAGAAGATTTTTGA

mRNA sequence

ATGGGAAACTGCGTGGTCTTGCCTTGCGTCCGGTCGCCGCAGAAGAATCTTAGAGGGCTCGAGAAAGCCACTGATTCAGCTACAACTGTTGTTGAGTCTGCTACAGAGTGCGGTAATAATTTTACTTCTACAACCAGAACCAGCCTCCAAGTTGGCGAATGCTTGAAAGAGCTCGAAAATCTTCTGGCTTCCTCAAAGATAGCCTACTCGGATGGAGGGGGAGCAAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTGAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAAGCTCGACATAGATTGTTGAGCTATACAGTCCCCCGTAGAGGGTGTCAAAAATGGCGGCCGATTTTGTCTGCAATCGCGGAGGAAGAAGATTTTTGA

Coding sequence (CDS)

ATGGGAAACTGCGTGGTCTTGCCTTGCGTCCGGTCGCCGCAGAAGAATCTTAGAGGGCTCGAGAAAGCCACTGATTCAGCTACAACTGTTGTTGAGTCTGCTACAGAGTGCGGTAATAATTTTACTTCTACAACCAGAACCAGCCTCCAAGTTGGCGAATGCTTGAAAGAGCTCGAAAATCTTCTGGCTTCCTCAAAGATAGCCTACTCGGATGGAGGGGGAGCAAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTGAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAAGCTCGACATAGATTGTTGAGCTATACAGTCCCCCGTAGAGGGTGTCAAAAATGGCGGCCGATTTTGTCTGCAATCGCGGAGGAAGAAGATTTTTGA

Protein sequence

MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNNFTSTTRTSLQVGECLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPRRGCQKWRPILSAIAEEEDF
Homology
[Close]
BLAST of Cla010974 vs. TrEMBL
Match: A0A0A0LSY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173150 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.0e-46
Identity = 102/140 (72.86%), Postives = 115/140 (82.14%), Query Frame = 1 

Query: 1   MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNN-----FTSTTRTSLQVGE-- 60
           MGNC+VLP VRSPQK LRGL+KAT+ ATT+V SATECGN+     F S+T+TSLQV E  
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  ----CLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVP 120
               CLKELENLLAS KI YSD  GA+KVKIVVTKEQF+LLL+NAKKLQ RHRLLSYT P
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RRGCQKWRPILSAIAEEEDF 130
           R+GC+ WRP LSAI+EEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

[Close]
BLAST of Cla010974 vs. NCBI nr
Match: gi|700209899|gb|KGN64995.1| (hypothetical protein Csa_1G173150 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 4.3e-46
Identity = 102/140 (72.86%), Postives = 115/140 (82.14%), Query Frame = 1 

Query: 1   MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNN-----FTSTTRTSLQVGE-- 60
           MGNC+VLP VRSPQK LRGL+KAT+ ATT+V SATECGN+     F S+T+TSLQV E  
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  ----CLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVP 120
               CLKELENLLAS KI YSD  GA+KVKIVVTKEQF+LLL+NAKKLQ RHRLLSYT P
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RRGCQKWRPILSAIAEEEDF 130
           R+GC+ WRP LSAI+EEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

The following BLAST results are available for this feature:
BLAST of Cla010974 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSY9_CUCSA3.0e-4672.86Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173150 PE=4 SV=1[more]
BLAST of Cla010974 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209899|gb|KGN64995.1|4.3e-4672.86hypothetical protein Csa_1G173150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010974Cla010974.1mRNA