Cucsa.319370 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.319370
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold03078 : 66532 .. 67010 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGCAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGAATAACTGTATAGGTTACAGAGATGATGGAGATCAAGTACAAAATTCAAGTGTTTGT

mRNA sequence

ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGCAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGAATAACTGTATAGGTTACAGAGATGATGGAGATCAAGTACAAAATTCAAGTGTTTGT

Coding sequence (CDS)

ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGCAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGA

Protein sequence

MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVRNVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGPRKGCKNWRPTLSAISEEEDF*

Homology

[Close]

BLAST of Cucsa.319370 vs. TrEMBL
Match: A0A0A0LSY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173150 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.6e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
           MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
           NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RKGCKNWRPTLSAISEEEDF 141
           RKGCKNWRPTLSAISEEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

[Close]

BLAST of Cucsa.319370 vs. NCBI nr
Match: gi|700209899|gb|KGN64995.1| (hypothetical protein Csa_1G173150 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 2.2e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
           MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
           NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RKGCKNWRPTLSAISEEEDF 141
           RKGCKNWRPTLSAISEEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

The following BLAST results are available for this feature:

BLAST of Cucsa.319370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSY9_CUCSA	1.6e-72	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173150 PE=4 SV=1	[more]

BLAST of Cucsa.319370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209899\|gb\|KGN64995.1\|	2.2e-72	100.00	hypothetical protein Csa_1G173150 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.319370.1	Cucsa.319370.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.319370	Cla010974	Watermelon (97103) v1	cgywmB581
Cucsa.319370	Csa1G173150	Cucumber (Chinese Long) v2	cgycuB457
Cucsa.319370	MELO3C026074	Melon (DHL92) v3.5.1	cgymeB528
Cucsa.319370	ClCG01G010970	Watermelon (Charleston Gray)	cgywcgB552
Cucsa.319370	CSPI01G15340	Wild cucumber (PI 183967)	cgycpiB482
Cucsa.319370	CmoCh18G005780	Cucurbita moschata (Rifu)	cgycmoB0882
Cucsa.319370	Lsi02G011560	Bottle gourd (USVL1VR-Ls)	cgylsiB522
Cucsa.319370	Cp4.1LG09g06400	Cucurbita pepo (Zucchini)	cgycpeB0841
Cucsa.319370	CsaV3_1G015500	Cucumber (Chinese Long) v3	cgycucB496
Cucsa.319370	Cla97C01G010700	Watermelon (97103) v2	cgywmbB557

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.319370	Cucurbita maxima (Rimu)	cgycmaB0884
Cucsa.319370	Melon (DHL92) v3.5.1	cgymeB527
Cucsa.319370	Cucurbita pepo (Zucchini)	cgycpeB0840
Cucsa.319370	Bottle gourd (USVL1VR-Ls)	cgylsiB521
Cucsa.319370	Melon (DHL92) v3.6.1	cgymedB527
Cucsa.319370	Melon (DHL92) v3.6.1	cgymedB529
Cucsa.319370	Watermelon (97103) v2	cgywmbB558
Cucsa.319370	Wax gourd	cgywgoB640