CsaV3_1G015500 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G015500
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 11053660 .. 11054082 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGCAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGA

mRNA sequence

ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGCAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGA

Coding sequence (CDS)

ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGCAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGA

Protein sequence

MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVRNVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGPRKGCKNWRPTLSAISEEEDF

Homology

[Close]

BLAST of CsaV3_1G015500 vs. NCBI nr
Match: KGN64995.1 (hypothetical protein Csa_1G173150 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 5.7e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
           MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
           NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RKGCKNWRPTLSAISEEEDF 141
           RKGCKNWRPTLSAISEEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

[Close]

BLAST of CsaV3_1G015500 vs. NCBI nr
Match: XP_023542404.1 (uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 4.1e-30
Identity = 81/139 (58.27%), Postives = 94/139 (67.63%), Query Frame = 0


Query: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
           MGNCI+LP V SP K L     + ELA T+V SATE GNDPLL                 
Sbjct: 136 MGNCIILPCVHSPSKNL-----SPELA-TVVDSATEQGNDPLL----------------- 195

Query: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
           +VVPCLKELENLL  LK  YS   GA++VKIVVT+EQFKLLL+NAKK+Q  +RLLSY GP
Sbjct: 196 DVVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGP 251

Query: 121 RKGCKNWRPTLSAISEEED 140
            +G + WRP LS ISEEE+
Sbjct: 256 GRGRRKWRPMLSVISEEEE 251

[Close]

BLAST of CsaV3_1G015500 vs. NCBI nr
Match: ONI09721.1 (hypothetical protein PRUPE_4G005300 [Prunus persica])

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 52  TSLQVCEVRNVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYR 111
           T L+  EV ++VP L  L   L   KIV+ +    +K+KIVVT+EQ +LLL +A K +  
Sbjct: 61  TKLEQGEVYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRSP 120

Query: 112 HRL---LSYTGPRKGCKNWRPTLSAISEEEDF 141
             +   LS     +G   WRP+L+ I E   F
Sbjct: 121 KEIGVQLSGRSGLEGSPKWRPSLAIIPEVHSF 152

[Close]

BLAST of CsaV3_1G015500 vs. NCBI nr
Match: PQP96268.1 (hypothetical protein Pyn_29074 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 54.7 bits (130), Expect = 3.0e-04
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 52  TSLQVCEVRNVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYR 111
           T L+  EV ++VP L  L   L   KIV+ +    +K+KIVVT+EQ +LLL +A K +  
Sbjct: 61  TKLEPGEVYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRSP 120

Query: 112 HRL---LSYTGPRKGCKNWRPTLSAISEEEDF 141
             +   LS     +G   WRP+L+ I E   F
Sbjct: 121 KEIGVQLSGRSGLEGPPKWRPSLAIIPEVHSF 152

[Close]

BLAST of CsaV3_1G015500 vs. NCBI nr
Match: PQQ11255.1 (hypothetical protein Pyn_06292 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 52  TSLQVCEVRNVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYR 111
           T L+  EV ++VP L  L   L   KIV+ +    +K+KIVVT+EQ +LLL  A K +  
Sbjct: 73  TKLEPGEVYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKTANKFRSP 132

Query: 112 HRL---LSYTGPRKGCKNWRPTLSAISEEEDF 141
             +   LS     +G   WRP+L+ I E   F
Sbjct: 133 KEIGVQLSGRSGLEGPPKWRPSLAIIPEVHSF 164

[Close]

BLAST of CsaV3_1G015500 vs. TrEMBL
Match: tr|A0A0A0LSY9|A0A0A0LSY9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.8e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
           MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
           NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RKGCKNWRPTLSAISEEEDF 141
           RKGCKNWRPTLSAISEEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

[Close]

BLAST of CsaV3_1G015500 vs. TrEMBL
Match: tr|A0A251PDS0|A0A251PDS0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G005300 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 52  TSLQVCEVRNVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYR 111
           T L+  EV ++VP L  L   L   KIV+ +    +K+KIVVT+EQ +LLL +A K +  
Sbjct: 61  TKLEQGEVYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRSP 120

Query: 112 HRL---LSYTGPRKGCKNWRPTLSAISEEEDF 141
             +   LS     +G   WRP+L+ I E   F
Sbjct: 121 KEIGVQLSGRSGLEGSPKWRPSLAIIPEVHSF 152

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64995.1	5.7e-72	100.00	hypothetical protein Csa_1G173150 [Cucumis sativus]	[more]
XP_023542404.1	4.1e-30	58.27	uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo]	[more]
ONI09721.1	1.7e-04	38.04	hypothetical protein PRUPE_4G005300 [Prunus persica]	[more]
PQP96268.1	3.0e-04	38.04	hypothetical protein Pyn_29074 [Prunus yedoensis var. nudiflora]	[more]
PQQ11255.1	3.9e-04	38.04	hypothetical protein Pyn_06292 [Prunus yedoensis var. nudiflora]	[more]

BLAST of CsaV3_1G015500 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSY9\|A0A0A0LSY9_CUCSA	3.8e-72	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1	[more]
tr\|A0A251PDS0\|A0A251PDS0_PRUPE	1.2e-04	38.04	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G005300 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015500.1	CsaV3_1G015500.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G015500	CSPI01G15340	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G015500	Cucsa.319370	Cucumber (Gy14) v1	cgycucB496
CsaV3_1G015500	CsGy1G015110	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G015500	Cla010974	Watermelon (97103) v1	cucwmB049
CsaV3_1G015500	MELO3C026074	Melon (DHL92) v3.5.1	cucmeB016
CsaV3_1G015500	ClCG01G010970	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G015500	Lsi02G011560	Bottle gourd (USVL1VR-Ls)	cuclsiB027
CsaV3_1G015500	Cla97C01G010700	Watermelon (97103) v2	cucwmbB008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G015500	Cucumber (Chinese Long) v3	cuccucB053
CsaV3_1G015500	Silver-seed gourd	carcucB0054
CsaV3_1G015500	Silver-seed gourd	carcucB0056
CsaV3_1G015500	Cucurbita maxima (Rimu)	cmacucB0246
CsaV3_1G015500	Cucurbita maxima (Rimu)	cmacucB0468
CsaV3_1G015500	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G015500	Cucurbita maxima (Rimu)	cmacucB1004
CsaV3_1G015500	Cucurbita moschata (Rifu)	cmocucB0459
CsaV3_1G015500	Cucurbita pepo (Zucchini)	cpecucB0021
CsaV3_1G015500	Wild cucumber (PI 183967)	cpicucB318
CsaV3_1G015500	Bottle gourd (USVL1VR-Ls)	cuclsiB017
CsaV3_1G015500	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G015500	Bottle gourd (USVL1VR-Ls)	cuclsiB044
CsaV3_1G015500	Melon (DHL92) v3.5.1	cucmeB029
CsaV3_1G015500	Melon (DHL92) v3.6.1	cucmedB015
CsaV3_1G015500	Melon (DHL92) v3.6.1	cucmedB025
CsaV3_1G015500	Watermelon (Charleston Gray)	cucwcgB021
CsaV3_1G015500	Watermelon (Charleston Gray)	cucwcgB029
CsaV3_1G015500	Watermelon (97103) v1	cucwmB064
CsaV3_1G015500	Watermelon (97103) v1	cucwmB067
CsaV3_1G015500	Wax gourd	cucwgoB039