CSPI01G15340 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G15340
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 10938692 .. 10939114 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGGAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGA

mRNA sequence

ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGGAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGA

Coding sequence (CDS)

ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGGAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGA

Homology

[Close]

BLAST of CSPI01G15340 vs. TrEMBL
Match: A0A0A0LSY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173150 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.6e-72
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 1


Query: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
           MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  NVVPCLKELENLLASLKIVYSDEGGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
           NVVPCLKELENLLASLKIVYSDE GAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RKGCKNWRPTLSAISEEEDF 141
           RKGCKNWRPTLSAISEEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

[Close]

BLAST of CSPI01G15340 vs. NCBI nr
Match: gi|700209899|gb|KGN64995.1| (hypothetical protein Csa_1G173150 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 6.5e-72
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 1


Query: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
           MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  NVVPCLKELENLLASLKIVYSDEGGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
           NVVPCLKELENLLASLKIVYSDE GAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RKGCKNWRPTLSAISEEEDF 141
           RKGCKNWRPTLSAISEEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

The following BLAST results are available for this feature:

BLAST of CSPI01G15340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G15340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSY9_CUCSA	4.6e-72	99.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173150 PE=4 SV=1	[more]

BLAST of CSPI01G15340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G15340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209899\|gb\|KGN64995.1\|	6.5e-72	99.29	hypothetical protein Csa_1G173150 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G15340.1	CSPI01G15340.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G15340	Cla010974	Watermelon (97103) v1	cpiwmB044
CSPI01G15340	Csa1G173150	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G15340	MELO3C026074	Melon (DHL92) v3.5.1	cpimeB017
CSPI01G15340	ClCG01G010970	Watermelon (Charleston Gray)	cpiwcgB025
CSPI01G15340	Lsi02G011560	Bottle gourd (USVL1VR-Ls)	cpilsiB027
CSPI01G15340	CsaV3_1G015500	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G15340	Cla97C01G010700	Watermelon (97103) v2	cpiwmbB009
CSPI01G15340	Cucsa.319370	Cucumber (Gy14) v1	cgycpiB482
CSPI01G15340	CmoCh18G005780	Cucurbita moschata (Rifu)	cmocpiB385
CSPI01G15340	Cp4.1LG09g06400	Cucurbita pepo (Zucchini)	cpecpiB017
CSPI01G15340	CsGy1G015110	Cucumber (Gy14) v2	cgybcpiB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G15340	Cucurbita pepo (Zucchini)	cpecpiB051
CSPI01G15340	Bottle gourd (USVL1VR-Ls)	cpilsiB019
CSPI01G15340	Bottle gourd (USVL1VR-Ls)	cpilsiB033
CSPI01G15340	Bottle gourd (USVL1VR-Ls)	cpilsiB038
CSPI01G15340	Melon (DHL92) v3.6.1	cpimedB017
CSPI01G15340	Melon (DHL92) v3.6.1	cpimedB025
CSPI01G15340	Cucumber (Gy14) v2	cgybcpiB249
CSPI01G15340	Silver-seed gourd	carcpiB0053
CSPI01G15340	Silver-seed gourd	carcpiB0055
CSPI01G15340	Silver-seed gourd	carcpiB0435
CSPI01G15340	Cucumber (Chinese Long) v3	cpicucB052
CSPI01G15340	Watermelon (97103) v2	cpiwmbB005
CSPI01G15340	Watermelon (97103) v2	cpiwmbB008
CSPI01G15340	Wax gourd	cpiwgoB036
CSPI01G15340	Wild cucumber (PI 183967)	cpicpiB039
CSPI01G15340	Wild cucumber (PI 183967)	cpicpiB049
CSPI01G15340	Cucumber (Gy14) v1	cgycpiB017
CSPI01G15340	Cucurbita maxima (Rimu)	cmacpiB215
CSPI01G15340	Cucurbita maxima (Rimu)	cmacpiB212
CSPI01G15340	Cucurbita maxima (Rimu)	cmacpiB222
CSPI01G15340	Cucurbita maxima (Rimu)	cmacpiB399
CSPI01G15340	Cucurbita maxima (Rimu)	cmacpiB403
CSPI01G15340	Cucumber (Chinese Long) v2	cpicuB049
CSPI01G15340	Melon (DHL92) v3.5.1	cpimeB031
CSPI01G15340	Watermelon (Charleston Gray)	cpiwcgB022
CSPI01G15340	Watermelon (Charleston Gray)	cpiwcgB023
CSPI01G15340	Watermelon (Charleston Gray)	cpiwcgB030
CSPI01G15340	Watermelon (97103) v1	cpiwmB050
CSPI01G15340	Watermelon (97103) v1	cpiwmB063