Cp4.1LG09g06400 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g06400
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG09 : 4856438 .. 4856788 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACTGCATCATCTTGCCTTGCGTTCACTCGCCATCGAAGAACCTTTCCCCCGAGTTAGCTACAGTGGTCGATTCCGCAACTGAACAAGGCAACGACCCTCTTCTCGATGTTGTTCCATGCTTGAAAGAGCTCGAAAATCTTCTGGTTTACTTGAAGACAGCGTACTCGAGTGGAGGAGGAGCAAGGGAGGTGAAAATTGTTGTTACTAGGGAACAGTTTAAGTTGCTGTTGGCAAATGCAAAGAAGATGCAATCTGCATATAGATTGTTGAGCTATAGAGGACCCGGTAGAGGGCGTCGAAAATGGCGGCCGATGCTGTCTGTAATCTCGGAGGAAGAAGAGTAG

mRNA sequence

ATGGGAAACTGCATCATCTTGCCTTGCGTTCACTCGCCATCGAAGAACCTTTCCCCCGAGTTAGCTACAGTGGTCGATTCCGCAACTGAACAAGGCAACGACCCTCTTCTCGATGTTGTTCCATGCTTGAAAGAGCTCGAAAATCTTCTGGTTTACTTGAAGACAGCGTACTCGAGTGGAGGAGGAGCAAGGGAGGTGAAAATTGTTGTTACTAGGGAACAGTTTAAGTTGCTGTTGGCAAATGCAAAGAAGATGCAATCTGCATATAGATTGTTGAGCTATAGAGGACCCGGTAGAGGGCGTCGAAAATGGCGGCCGATGCTGTCTGTAATCTCGGAGGAAGAAGAGTAG

Coding sequence (CDS)

ATGGGAAACTGCATCATCTTGCCTTGCGTTCACTCGCCATCGAAGAACCTTTCCCCCGAGTTAGCTACAGTGGTCGATTCCGCAACTGAACAAGGCAACGACCCTCTTCTCGATGTTGTTCCATGCTTGAAAGAGCTCGAAAATCTTCTGGTTTACTTGAAGACAGCGTACTCGAGTGGAGGAGGAGCAAGGGAGGTGAAAATTGTTGTTACTAGGGAACAGTTTAAGTTGCTGTTGGCAAATGCAAAGAAGATGCAATCTGCATATAGATTGTTGAGCTATAGAGGACCCGGTAGAGGGCGTCGAAAATGGCGGCCGATGCTGTCTGTAATCTCGGAGGAAGAAGAGTAG

Protein sequence

MGNCIILPCVHSPSKNLSPELATVVDSATEQGNDPLLDVVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGPGRGRRKWRPMLSVISEEEE

Homology

[Close]

BLAST of Cp4.1LG09g06400 vs. TrEMBL
Match: A0A0A0LSY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173150 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.6e-30
Identity = 81/139 (58.27%), Postives = 94/139 (67.63%), Query Frame = 1


Query: 1   MGNCIILPCVHSPSKNL-----SPELAT-VVDSATEQGNDPLL----------------- 60
           MGNCI+LP V SP K L     + ELAT +V SATE GNDPLL                 
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  DVVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGP 117
           +VVPCLKELENLL  LK  YS   GA++VKIVVT+EQFKLLL+NAKK+Q  +RLLSY GP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

[Close]

BLAST of Cp4.1LG09g06400 vs. NCBI nr
Match: gi|700209899|gb|KGN64995.1| (hypothetical protein Csa_1G173150 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-30
Identity = 81/139 (58.27%), Postives = 94/139 (67.63%), Query Frame = 1


Query: 1   MGNCIILPCVHSPSKNL-----SPELAT-VVDSATEQGNDPLL----------------- 60
           MGNCI+LP V SP K L     + ELAT +V SATE GNDPLL                 
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  DVVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGP 117
           +VVPCLKELENLL  LK  YS   GA++VKIVVT+EQFKLLL+NAKK+Q  +RLLSY GP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g06400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g06400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSY9_CUCSA	1.6e-30	58.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173150 PE=4 SV=1	[more]

BLAST of Cp4.1LG09g06400 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g06400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209899\|gb\|KGN64995.1\|	2.3e-30	58.27	hypothetical protein Csa_1G173150 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g06400.1	Cp4.1LG09g06400.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g06400	Cucsa.319370	Cucumber (Gy14) v1	cgycpeB0841
Cp4.1LG09g06400	CmaCh13G003630	Cucurbita maxima (Rimu)	cmacpeB212
Cp4.1LG09g06400	CmoCh13G003950	Cucurbita moschata (Rifu)	cmocpeB182
Cp4.1LG09g06400	CmoCh18G005780	Cucurbita moschata (Rifu)	cmocpeB375
Cp4.1LG09g06400	Cla010974	Watermelon (97103) v1	cpewmB046
Cp4.1LG09g06400	Csa1G173150	Cucumber (Chinese Long) v2	cpecuB020
Cp4.1LG09g06400	MELO3C026074	Melon (DHL92) v3.5.1	cpemeB032
Cp4.1LG09g06400	ClCG01G010970	Watermelon (Charleston Gray)	cpewcgB025
Cp4.1LG09g06400	CSPI01G15340	Wild cucumber (PI 183967)	cpecpiB017
Cp4.1LG09g06400	Lsi02G011560	Bottle gourd (USVL1VR-Ls)	cpelsiB027

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g06400	Cucumber (Chinese Long) v3	cpecucB0021
Cp4.1LG09g06400	Wax gourd	cpewgoB0042
Cp4.1LG09g06400	Cucurbita pepo (Zucchini)	cpecpeB048
Cp4.1LG09g06400	Cucumber (Gy14) v1	cgycpeB0840
Cp4.1LG09g06400	Cucurbita maxima (Rimu)	cmacpeB415
Cp4.1LG09g06400	Melon (DHL92) v3.5.1	cpemeB028
Cp4.1LG09g06400	Cucumber (Gy14) v2	cgybcpeB007
Cp4.1LG09g06400	Melon (DHL92) v3.6.1	cpemedB033
Cp4.1LG09g06400	Silver-seed gourd	carcpeB0065