MELO3C026074 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C026074
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionS-adenosylmethionine:tRNA ribosyltransferase-isomerase
Locationchr12 : 14910874 .. 14911296 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTCAAGGGCTTAAAAAAGCCACGGGTTTAGCTACACCTATTGTCTATTCTGCTAGCGAATGTGGTAATGACCCTCTTCTGAAGTACTGTAACTCTTCAACCAAAACTAGCCTCCAAGTTGGGGAGGTTCGAAATGTTGTTCCGTGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCTTCGAAGATAGTCTACTCGGATGGAGGGGGAGCAAAGAAGGTGAAGATTGTGGTAACTAGGGAACAGTTTAAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAATCTCGATATAGATTGTTGAGCTACACAGGCCCCCGTAAGGGGTGTAAAAATTGGCGGCCGACGTTGTCTGCAATCTTGGAGGAAGAAGATTTTTGA

mRNA sequence

ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTCAAGGGCTTAAAAAAGCCACGGGTTTAGCTACACCTATTGTCTATTCTGCTAGCGAATGTGGTAATGACCCTCTTCTGAAGTACTGTAACTCTTCAACCAAAACTAGCCTCCAAGTTGGGGAGGTTCGAAATGTTGTTCCGTGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCTTCGAAGATAGTCTACTCGGATGGAGGGGGAGCAAAGAAGGTGAAGATTGTGGTAACTAGGGAACAGTTTAAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAATCTCGATATAGATTGTTGAGCTACACAGGCCCCCGTAAGGGGTGTAAAAATTGGCGGCCGACGTTGTCTGCAATCTTGGAGGAAGAAGATTTTTGA

Coding sequence (CDS)

ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTCAAGGGCTTAAAAAAGCCACGGGTTTAGCTACACCTATTGTCTATTCTGCTAGCGAATGTGGTAATGACCCTCTTCTGAAGTACTGTAACTCTTCAACCAAAACTAGCCTCCAAGTTGGGGAGGTTCGAAATGTTGTTCCGTGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCTTCGAAGATAGTCTACTCGGATGGAGGGGGAGCAAAGAAGGTGAAGATTGTGGTAACTAGGGAACAGTTTAAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAATCTCGATATAGATTGTTGAGCTACACAGGCCCCCGTAAGGGGTGTAAAAATTGGCGGCCGACGTTGTCTGCAATCTTGGAGGAAGAAGATTTTTGA

Protein sequence

MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVRNVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGPRKGCKNWRPTLSAILEEEDF*
Homology
[Close]
BLAST of MELO3C026074 vs. TrEMBL
Match: A0A0A0LSY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173150 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 8.9e-60
Identity = 123/140 (87.86%), Postives = 128/140 (91.43%), Query Frame = 1 

Query: 1   MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60
           MGNCIVLPSVRSPQKKL+GLKKAT LAT IV SA+ECGNDPLLK   SSTKTSLQV EVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGP 120
           NVVPCLKELENLLAS KIVYSD  GAKKVKIVVT+EQFKLLL+NAKKLQ R+RLLSYTGP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RKGCKNWRPTLSAILEEEDF 141
           RKGCKNWRPTLSAI EEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

[Close]
BLAST of MELO3C026074 vs. NCBI nr
Match: gi|700209899|gb|KGN64995.1| (hypothetical protein Csa_1G173150 [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 1.3e-59
Identity = 123/140 (87.86%), Postives = 128/140 (91.43%), Query Frame = 1 

Query: 1   MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60
           MGNCIVLPSVRSPQKKL+GLKKAT LAT IV SA+ECGNDPLLK   SSTKTSLQV EVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGP 120
           NVVPCLKELENLLAS KIVYSD  GAKKVKIVVT+EQFKLLL+NAKKLQ R+RLLSYTGP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RKGCKNWRPTLSAILEEEDF 141
           RKGCKNWRPTLSAI EEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

The following BLAST results are available for this feature:
BLAST of MELO3C026074 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSY9_CUCSA8.9e-6087.86Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173150 PE=4 SV=1[more]
BLAST of MELO3C026074 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209899|gb|KGN64995.1|1.3e-5987.86hypothetical protein Csa_1G173150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026074T1MELO3C026074T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C026074Csa1G173150Cucumber (Chinese Long) v2cumeB004
MELO3C026074Cla010974Watermelon (97103) v1mewmB160
MELO3C026074ClCG01G010970Watermelon (Charleston Gray)mewcgB143
MELO3C026074Cla97C01G010700Watermelon (97103) v2mewmbB145
MELO3C026074CSPI01G15340Wild cucumber (PI 183967)cpimeB017
MELO3C026074Cucsa.319370Cucumber (Gy14) v1cgymeB528
MELO3C026074CmoCh18G005780Cucurbita moschata (Rifu)cmomeB358
MELO3C026074Lsi02G011560Bottle gourd (USVL1VR-Ls)lsimeB176
MELO3C026074Cp4.1LG09g06400Cucurbita pepo (Zucchini)cpemeB032
MELO3C026074CsGy1G015110Cucumber (Gy14) v2cgybmeB016
MELO3C026074CsaV3_1G015500Cucumber (Chinese Long) v3cucmeB016
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026074Cucumber (Gy14) v2cgybmeB396
MELO3C026074Silver-seed gourdcarmeB0047
MELO3C026074Silver-seed gourdcarmeB0050
MELO3C026074Cucumber (Chinese Long) v3cucmeB029
MELO3C026074Watermelon (97103) v2mewmbB139
MELO3C026074Wax gourdmewgoB172
MELO3C026074Cucumber (Gy14) v1cgymeB018
MELO3C026074Cucumber (Gy14) v1cgymeB527
MELO3C026074Cucurbita maxima (Rimu)cmameB203
MELO3C026074Cucurbita maxima (Rimu)cmameB361
MELO3C026074Cucurbita maxima (Rimu)cmameB367
MELO3C026074Cucurbita maxima (Rimu)cmameB369
MELO3C026074Cucurbita moschata (Rifu)cmomeB189
MELO3C026074Wild cucumber (PI 183967)cpimeB451
MELO3C026074Watermelon (Charleston Gray)mewcgB136
MELO3C026074Watermelon (97103) v1mewmB164
MELO3C026074Watermelon (97103) v1mewmB165
MELO3C026074Cucurbita pepo (Zucchini)cpemeB474
MELO3C026074Bottle gourd (USVL1VR-Ls)lsimeB129
MELO3C026074Bottle gourd (USVL1VR-Ls)lsimeB184