Cla97C01G010700 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G010700
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr01 : 16371844 .. 16372233 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACTGCGTGGTCTTGCCTTGCGTCCGGTCGCCGCAGAAGAATCTTAGAGGGCTCGAGAAAGCCACTGATTCAGCTACAACTGTTGTTGAGTCTGCTACAGAGTGCGGTAATAATTTTACTTCTACAACCAGAACCAGCCTCCAAGTTGGCGAATGCTTGAAAGAGCTCGAAAATCTTCTGGCTTCCTCAAAGATAGCCTACTCGGATGGAGGGGGAGCAAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTGAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAAGCTCGACATAGATTGTTGAGCTATACAGTCCCCCGTAGAGGGTGTCAAAAATGGCGGCCGATTTTGTCTGCAATCGCGGAGGAAGAAGATTTTTGA

mRNA sequence

ATGGGAAACTGCGTGGTCTTGCCTTGCGTCCGGTCGCCGCAGAAGAATCTTAGAGGGCTCGAGAAAGCCACTGATTCAGCTACAACTGTTGTTGAGTCTGCTACAGAGTGCGGTAATAATTTTACTTCTACAACCAGAACCAGCCTCCAAGTTGGCGAATGCTTGAAAGAGCTCGAAAATCTTCTGGCTTCCTCAAAGATAGCCTACTCGGATGGAGGGGGAGCAAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTGAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAAGCTCGACATAGATTGTTGAGCTATACAGTCCCCCGTAGAGGGTGTCAAAAATGGCGGCCGATTTTGTCTGCAATCGCGGAGGAAGAAGATTTTTGA

Coding sequence (CDS)

ATGGGAAACTGCGTGGTCTTGCCTTGCGTCCGGTCGCCGCAGAAGAATCTTAGAGGGCTCGAGAAAGCCACTGATTCAGCTACAACTGTTGTTGAGTCTGCTACAGAGTGCGGTAATAATTTTACTTCTACAACCAGAACCAGCCTCCAAGTTGGCGAATGCTTGAAAGAGCTCGAAAATCTTCTGGCTTCCTCAAAGATAGCCTACTCGGATGGAGGGGGAGCAAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTGAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAAGCTCGACATAGATTGTTGAGCTATACAGTCCCCCGTAGAGGGTGTCAAAAATGGCGGCCGATTTTGTCTGCAATCGCGGAGGAAGAAGATTTTTGA

Protein sequence

MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNNFTSTTRTSLQVGECLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPRRGCQKWRPILSAIAEEEDF

Homology

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BLAST of Cla97C01G010700 vs. NCBI nr
Match: KGN64995.1 (hypothetical protein Csa_1G173150 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 3.2e-45
Identity = 102/140 (72.86%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGN-----NFTSTTRTSLQVGE-- 60
           MGNC+VLP VRSPQK LRGL+KAT+ ATT+V SATECGN     +F S+T+TSLQV E  
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  ----CLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVP 120
               CLKELENLLAS KI YSD  GA+KVKIVVTKEQF+LLL+NAKKLQ RHRLLSYT P
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RRGCQKWRPILSAIAEEEDF 130
           R+GC+ WRP LSAI+EEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

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BLAST of Cla97C01G010700 vs. NCBI nr
Match: XP_023542404.1 (uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.9 bits (359), Expect = 7.6e-31
Identity = 78/128 (60.94%), Postives = 93/128 (72.66%), Query Frame = 0


Query: 1   MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNNFTSTTRTSLQVGECLKELEN 60
           MGNC++LPCV SP KNL      +    TVV+SATE GN+        L V  CLKELEN
Sbjct: 136 MGNCIILPCVHSPSKNL------SPELATVVDSATEQGND------PLLDVVPCLKELEN 195

Query: 61  LLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPRRGCQKWRPIL 120
           LL   K AYS GGGAR+VKIVVT+EQF+LLLANAKK+Q+ +RLLSY  P RG +KWRP+L
Sbjct: 196 LLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGPGRGRRKWRPML 251

Query: 121 SAIAEEED 129
           S I+EEE+
Sbjct: 256 SVISEEEE 251

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BLAST of Cla97C01G010700 vs. NCBI nr
Match: GAU38970.1 (hypothetical protein TSUD_378460 [Trifolium subterraneum])

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 47/136 (34.56%), Postives = 59/136 (43.38%), Query Frame = 0


Query: 1   MGNCVVLPCVRSPQKNLR-----GLEKATDSATTVVESATECGNNFTSTTRTSLQVGECL 60
           MGNCV   C   P+K  R     G E   +SA+  VE      +      R  +Q GE  
Sbjct: 1   MGNCVA--CYSQPKKQTRCPLIHGREIGVNSASAQVEKMNTASSKHYIAVRRKVQHGEVY 60

Query: 61  KELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPR--RGC 120
                L  S           R  KIVVT +Q ELLL+ +KK Q + R+ S T     R C
Sbjct: 61  HLAPFLRQSGTTTDDRKMKTRIAKIVVTTQQLELLLSGSKKFQIKTRVASVTKSSLLRRC 120

Query: 121 QKWRPILSAIAEEEDF 130
            KW P L  I E ++F
Sbjct: 121 PKWLPSLPTIPEVQNF 134

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BLAST of Cla97C01G010700 vs. NCBI nr
Match: PNX93197.1 (hypothetical protein L195_g016348 [Trifolium pratense])

HSP 1 Score: 57.0 bits (136), Expect = 5.5e-05
Identity = 45/135 (33.33%), Postives = 60/135 (44.44%), Query Frame = 0


Query: 1   MGNCVVLPCVRSPQKN-----LRGLEKATDSATTVVESATECGNNFTSTTRTSLQVGECL 60
           MGNCV   C   P+K      ++G E   + A+  VE      +      R  +Q GE  
Sbjct: 1   MGNCVT-SCYSQPKKQTGCPLIQGREIEVNKASAPVEKMNTASSKHYIAVRRKVQHGEDY 60

Query: 61  KELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPR-RGCQ 120
                L  S +         R VKIVVT EQ E+LL+ +KK Q + R+   T      C 
Sbjct: 61  HLAPFLRQSGRTTDDRKMKTRIVKIVVTTEQLEMLLSGSKKFQIKTRVAPVTKSSVLRCP 120

Query: 121 KWRPILSAIAEEEDF 130
           KW P LS I E ++F
Sbjct: 121 KWLPSLSTIQEVQNF 134

[Close]

BLAST of Cla97C01G010700 vs. NCBI nr
Match: OMO64682.1 (hypothetical protein COLO4_31926 [Corchorus olitorius])

HSP 1 Score: 53.1 bits (126), Expect = 7.9e-04
Identity = 43/126 (34.13%), Postives = 63/126 (50.00%), Query Frame = 0


Query: 1   MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNNFTSTTRTSLQVGECLKELEN 60
           MGNC+ L    + +  +    +  +   T +    +C +   ST     +VG  L    +
Sbjct: 1   MGNCINLMLSPAEKAKVHIFNEEEEFRATNLVKEVKCQSLPRSTKPPPGEVGCGLPHDHS 60

Query: 61  LLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLL-SYTVPRRGCQKWRPI 120
           +  S KI   +    R +KIVVT++Q E LL +AKK Q+  R + S  V RRG  KW+P 
Sbjct: 61  I--SLKIMKEESCQGRCIKIVVTRQQLEFLLRDAKKFQSMKRAVRSSGVLRRGNCKWKPS 120

Query: 121 LSAIAE 126
           LSAI E
Sbjct: 121 LSAIPE 124

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BLAST of Cla97C01G010700 vs. TrEMBL
Match: tr|A0A0A0LSY9|A0A0A0LSY9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.1e-45
Identity = 102/140 (72.86%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGN-----NFTSTTRTSLQVGE-- 60
           MGNC+VLP VRSPQK LRGL+KAT+ ATT+V SATECGN     +F S+T+TSLQV E  
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  ----CLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVP 120
               CLKELENLLAS KI YSD  GA+KVKIVVTKEQF+LLL+NAKKLQ RHRLLSYT P
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RRGCQKWRPILSAIAEEEDF 130
           R+GC+ WRP LSAI+EEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

[Close]

BLAST of Cla97C01G010700 vs. TrEMBL
Match: tr|A0A2K3MR02|A0A2K3MR02_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g016348 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-05
Identity = 45/135 (33.33%), Postives = 60/135 (44.44%), Query Frame = 0


Query: 1   MGNCVVLPCVRSPQKN-----LRGLEKATDSATTVVESATECGNNFTSTTRTSLQVGECL 60
           MGNCV   C   P+K      ++G E   + A+  VE      +      R  +Q GE  
Sbjct: 1   MGNCVT-SCYSQPKKQTGCPLIQGREIEVNKASAPVEKMNTASSKHYIAVRRKVQHGEDY 60

Query: 61  KELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPR-RGCQ 120
                L  S +         R VKIVVT EQ E+LL+ +KK Q + R+   T      C 
Sbjct: 61  HLAPFLRQSGRTTDDRKMKTRIVKIVVTTEQLEMLLSGSKKFQIKTRVAPVTKSSVLRCP 120

Query: 121 KWRPILSAIAEEEDF 130
           KW P LS I E ++F
Sbjct: 121 KWLPSLSTIQEVQNF 134

[Close]

BLAST of Cla97C01G010700 vs. TrEMBL
Match: tr|A0A1R3H2V7|A0A1R3H2V7_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31926 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.3e-04
Identity = 43/126 (34.13%), Postives = 63/126 (50.00%), Query Frame = 0


Query: 1   MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNNFTSTTRTSLQVGECLKELEN 60
           MGNC+ L    + +  +    +  +   T +    +C +   ST     +VG  L    +
Sbjct: 1   MGNCINLMLSPAEKAKVHIFNEEEEFRATNLVKEVKCQSLPRSTKPPPGEVGCGLPHDHS 60

Query: 61  LLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLL-SYTVPRRGCQKWRPI 120
           +  S KI   +    R +KIVVT++Q E LL +AKK Q+  R + S  V RRG  KW+P 
Sbjct: 61  I--SLKIMKEESCQGRCIKIVVTRQQLEFLLRDAKKFQSMKRAVRSSGVLRRGNCKWKPS 120

Query: 121 LSAIAE 126
           LSAI E
Sbjct: 121 LSAIPE 124

The following BLAST results are available for this feature:

BLAST of Cla97C01G010700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64995.1	3.2e-45	72.86	hypothetical protein Csa_1G173150 [Cucumis sativus]	[more]
XP_023542404.1	7.6e-31	60.94	uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo]	[more]
GAU38970.1	1.1e-05	34.56	hypothetical protein TSUD_378460 [Trifolium subterraneum]	[more]
PNX93197.1	5.5e-05	33.33	hypothetical protein L195_g016348 [Trifolium pratense]	[more]
OMO64682.1	7.9e-04	34.13	hypothetical protein COLO4_31926 [Corchorus olitorius]	[more]

BLAST of Cla97C01G010700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSY9\|A0A0A0LSY9_CUCSA	2.1e-45	72.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1	[more]
tr\|A0A2K3MR02\|A0A2K3MR02_TRIPR	3.6e-05	33.33	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g016348 PE=4 SV=1	[more]
tr\|A0A1R3H2V7\|A0A1R3H2V7_9ROSI	5.3e-04	34.13	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31926 PE=4 SV=1	[more]

BLAST of Cla97C01G010700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G010700 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G010700.1	Cla97C01G010700.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G010700	Cla010974	Watermelon (97103) v1	wmwmbB246
Cla97C01G010700	Csa1G173150	Cucumber (Chinese Long) v2	cuwmbB009
Cla97C01G010700	MELO3C026074	Melon (DHL92) v3.5.1	mewmbB145
Cla97C01G010700	ClCG01G010970	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G010700	CSPI01G15340	Wild cucumber (PI 183967)	cpiwmbB009
Cla97C01G010700	Cucsa.319370	Cucumber (Gy14) v1	cgywmbB557
Cla97C01G010700	CmoCh18G005780	Cucurbita moschata (Rifu)	cmowmbB380
Cla97C01G010700	Lsi02G011560	Bottle gourd (USVL1VR-Ls)	lsiwmbB159
Cla97C01G010700	CsaV3_1G015500	Cucumber (Chinese Long) v3	cucwmbB008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G010700	Silver-seed gourd	carwmbB0050
Cla97C01G010700	Silver-seed gourd	carwmbB0778
Cla97C01G010700	Cucumber (Gy14) v2	cgybwmbB009
Cla97C01G010700	Cucumber (Gy14) v1	cgywmbB325
Cla97C01G010700	Cucurbita maxima (Rimu)	cmawmbB394
Cla97C01G010700	Cucurbita moschata (Rifu)	cmowmbB042
Cla97C01G010700	Cucumber (Chinese Long) v3	cucwmbB007
Cla97C01G010700	Bottle gourd (USVL1VR-Ls)	lsiwmbB153
Cla97C01G010700	Melon (DHL92) v3.6.1	medwmbB126
Cla97C01G010700	Melon (DHL92) v3.6.1	medwmbB134
Cla97C01G010700	Melon (DHL92) v3.5.1	mewmbB138
Cla97C01G010700	Watermelon (97103) v1	wmwmbB239
Cla97C01G010700	Wax gourd	wgowmbB460