CmaCh18G006150.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G006150.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_12
Location	Cma_Chr18 : 5435118 .. 5435414 (+)
Sequence length	297

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGCTAACTGTTGTAGCAGCAGTTTCAGTGGTTATGTCATTGTTCGTATATGCAGCGCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTTTTGGTGGCAATGACAGCCTTTGGAGGAGGTTTCCAAGTTGGAACCGAAGTTCATGGTGAGAGAGCAGGTGAAAGGATCCTAGATTATGTAGCAGGACGGCCTGAATACGCCGAATACCAATACAAGTACCAATAA

mRNA sequence

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGCTAACTGTTGTAGCAGCAGTTTCAGTGGTTATGTCATTGTTCGTATATGCAGCGCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTTTTGGTGGCAATGACAGCCTTTGGAGGAGGTTTCCAAGTTGGAACCGAAGTTCATGGTGAGAGAGCAGGTGAAAGGATCCTAGATTATGTAGCAGGACGGCCTGAATACGCCGAATACCAATACAAGTACCAATAA

Coding sequence (CDS)

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGCTAACTGTTGTAGCAGCAGTTTCAGTGGTTATGTCATTGTTCGTATATGCAGCGCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTTTTGGTGGCAATGACAGCCTTTGGAGGAGGTTTCCAAGTTGGAACCGAAGTTCATGGTGAGAGAGCAGGTGAAAGGATCCTAGATTATGTAGCAGGACGGCCTGAATACGCCGAATACCAATACAAGTACCAATAA

Protein sequence

MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGFQVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ

Homology

[Close]

BLAST of CmaCh18G006150.1 vs. TrEMBL
Match: A0A0A0LYI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-33
Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = 1


Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  KVLQHKDQLTVVAAVSVV+SLFVYAAPRFLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
          QVGTE+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of CmaCh18G006150.1 vs. TrEMBL
Match: A0A061GGG1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.5e-18
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 1


Query: 6   IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K++Q++   T+    S +++  +Y APR L+IL +FWPLF ST V LVA+ AFGGG 
Sbjct: 92  IQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGGGS 151

Query: 66  QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
           Q+ TEVHGE+AG+ ++DYVA RPE+AE   K++
Sbjct: 152 QLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of CmaCh18G006150.1 vs. TrEMBL
Match: A0A151T6F9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_017189 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-16
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1


Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  K+LQ++  +T+    S+  SL +YAAPRFL+ILA+FWPLF ST V LVA+ AFGG  
Sbjct: 3  ISEKLLQYRYHITIAIVASLSFSLLLYAAPRFLTILAYFWPLFASTTVFLVAIIAFGGVS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAE 93
          +  +E HGE+AGE +LDYVAGR E+ +
Sbjct: 63 RFSSEDHGEKAGEGLLDYVAGRTEHTQ 89

[Close]

BLAST of CmaCh18G006150.1 vs. TrEMBL
Match: D7T5G5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00220 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1


Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQTK++Q++    +   VS++++L    APRFL+ILA+FWPLF+STAVLL+ M  FG   
Sbjct: 3  IQTKLMQYQYHFIITVVVSIILALLFQVAPRFLTILAYFWPLFVSTAVLLMVMIVFGQLS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPE 90
             TE+HGE+ GE +LDYVAGRPE
Sbjct: 63 PPSTEIHGEKTGEGLLDYVAGRPE 86

[Close]

BLAST of CmaCh18G006150.1 vs. TrEMBL
Match: I1MFR0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G117900 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-16
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1


Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  K+LQ++  +T+   VS+  SLF+YAAP FL+ILA+FWPLF ST V LVA+ AFGG  
Sbjct: 3  ISEKLLQYRYHITIAIVVSLSFSLFLYAAPHFLTILAYFWPLFASTTVFLVAIIAFGGVS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAE 93
          ++  E HGE+AGE +LDYVA R E+ +
Sbjct: 63 KLSNEDHGEKAGEGLLDYVAERTEHTQ 89

[Close]

BLAST of CmaCh18G006150.1 vs. TAIR10
Match: AT4G16400.1 (AT4G16400.1 unknown protein)

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-14
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 1


Query: 6   IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K+++++    V   VSV+++  VYAAPR L+ILA+FWPLF STA  L AM    GGF
Sbjct: 124 IQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFL-AMAITFGGF 183

Query: 66  QVGTEVHGERAGERILDYVAGRPE 90
           Q   ++  E  GER++DYVAGRPE
Sbjct: 184 Q---QLSEEATGERLMDYVAGRPE 203

[Close]

BLAST of CmaCh18G006150.1 vs. TAIR10
Match: AT3G13175.1 (AT3G13175.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 6.0e-06
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 9  KVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGFQV- 68
          K+L+ K Q+     +S++    V  +P FL++L++FWPLFLSTA+ L A+  F     + 
Sbjct: 6  KLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFARTSDLP 65

Query: 69 --GTEVHGERAG-----ERILDYVAG 87
             T + GE AG     E ILDYV G
Sbjct: 66 VSSTIIPGEGAGLKVAAEGILDYVVG 91

[Close]

BLAST of CmaCh18G006150.1 vs. NCBI nr
Match: gi|700209900|gb|KGN64996.1| (hypothetical protein Csa_1G173160 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 2.4e-33
Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = 1


Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  KVLQHKDQLTVVAAVSVV+SLFVYAAPRFLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
          QVGTE+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of CmaCh18G006150.1 vs. NCBI nr
Match: gi|659128598|ref|XP_008464280.1| (PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 5.4e-33
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQ K+LQHKDQ+TVVAAVSVV+SLFVY APRFLSILAFFWPLF STAVLLV MTAFGGGF
Sbjct: 3  IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
          QVG+E+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of CmaCh18G006150.1 vs. NCBI nr
Match: gi|590627047|ref|XP_007026343.1| (Uncharacterized protein TCM_030419 [Theobroma cacao])

HSP 1 Score: 98.6 bits (244), Expect = 6.4e-18
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 1


Query: 6   IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K++Q++   T+    S +++  +Y APR L+IL +FWPLF ST V LVA+ AFGGG 
Sbjct: 92  IQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGGGS 151

Query: 66  QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
           Q+ TEVHGE+AG+ ++DYVA RPE+AE   K++
Sbjct: 152 QLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of CmaCh18G006150.1 vs. NCBI nr
Match: gi|1012351459|gb|KYP62648.1| (hypothetical protein KK1_017189 [Cajanus cajan])

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-16
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1


Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  K+LQ++  +T+    S+  SL +YAAPRFL+ILA+FWPLF ST V LVA+ AFGG  
Sbjct: 3  ISEKLLQYRYHITIAIVASLSFSLLLYAAPRFLTILAYFWPLFASTTVFLVAIIAFGGVS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAE 93
          +  +E HGE+AGE +LDYVAGR E+ +
Sbjct: 63 RFSSEDHGEKAGEGLLDYVAGRTEHTQ 89

[Close]

BLAST of CmaCh18G006150.1 vs. NCBI nr
Match: gi|297736712|emb|CBI25748.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-16
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1


Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQTK++Q++    +   VS++++L    APRFL+ILA+FWPLF+STAVLL+ M  FG   
Sbjct: 3  IQTKLMQYQYHFIITVVVSIILALLFQVAPRFLTILAYFWPLFVSTAVLLMVMIVFGQLS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPE 90
             TE+HGE+ GE +LDYVAGRPE
Sbjct: 63 PPSTEIHGEKTGEGLLDYVAGRPE 86

The following BLAST results are available for this feature:

BLAST of CmaCh18G006150.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh18G006150.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYI8_CUCSA	1.7e-33	86.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1	[more]
A0A061GGG1_THECC	4.5e-18	51.61	Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1	[more]
A0A151T6F9_CAJCA	1.9e-16	55.17	Uncharacterized protein OS=Cajanus cajan GN=KK1_017189 PE=4 SV=1	[more]
D7T5G5_VITVI	2.5e-16	54.76	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00220 PE=4 SV=...	[more]
I1MFR0_SOYBN	3.2e-16	55.17	Uncharacterized protein OS=Glycine max GN=GLYMA_15G117900 PE=4 SV=1	[more]

BLAST of CmaCh18G006150.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16400.1	1.6e-14	52.38	unknown protein	[more]
AT3G13175.1	6.0e-06	39.53	unknown protein	[more]

BLAST of CmaCh18G006150.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209900\|gb\|KGN64996.1\|	2.4e-33	86.02	hypothetical protein Csa_1G173160 [Cucumis sativus]	[more]
gi\|659128598\|ref\|XP_008464280.1\|	5.4e-33	83.87	PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo]	[more]
gi\|590627047\|ref\|XP_007026343.1\|	6.4e-18	51.61	Uncharacterized protein TCM_030419 [Theobroma cacao]	[more]
gi\|1012351459\|gb\|KYP62648.1\|	2.7e-16	55.17	hypothetical protein KK1_017189 [Cajanus cajan]	[more]
gi\|297736712\|emb\|CBI25748.3\|	3.5e-16	54.76	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh18G006150	CmaCh18G006150	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh18G006150.1	CmaCh18G006150.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G006150.1.exon.1	CmaCh18G006150.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh18G006150.1.CDS.1	CmaCh18G006150.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	FAMILY NOT NAMED	coord: 6..89 score: 7.7