Cla97C07G144390 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C07G144390
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
Location	Cla97Chr07 : 31791085 .. 31791501 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL

Homology

[Close]

BLAST of Cla97C07G144390 vs. NCBI nr
Match: KGN53204.1 (hypothetical protein Csa_4G026810 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 2.1e-34
Identity = 90/140 (64.29%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLAXXXXXXXXXXXXXXXXXVM 60
           MSVSLEALAMAGIDSNEWAMDA+EWERN  EID VPPHLLA                   
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERN--EIDVVPPHLLA-----DEEDDEDGDEHVTT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDG--VHCILGIFCSLSKAIERKASNGMNSVRIMVRT 120
           S +SNY FP+ G F     +D + DG   H ILGIFCSLSK IE++ASNGM+SVRI+VRT
Sbjct: 61  STISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRT 120

Query: 121 ILGFLMVMTIKIISAQTSKL 139
           ILGFLMVMT+KIISAQ SK+
Sbjct: 121 ILGFLMVMTMKIISAQRSKM 133

[Close]

BLAST of Cla97C07G144390 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 103.2 bits (256), Expect = 7.2e-19
Identity = 65/137 (47.45%), Postives = 80/137 (58.39%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLAXXXXXXXXXXXXXXXXXVM 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE E D +PPHLLA                   
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKD-IPPHLLADEDDEEDE----------- 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMNSVRIMVRTIL 120
               + +FP      SC RKD    GV C   I   L K  E++  N ++S+ I+   ++
Sbjct: 61  ---MSTKFPATRC--SCCRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVV 120

Query: 121 GFLMVMTIKIISAQTSK 138
           GFLM MTIKII+++ SK
Sbjct: 121 GFLMFMTIKIIASKRSK 120

[Close]

BLAST of Cla97C07G144390 vs. NCBI nr
Match: KGN53205.1 (hypothetical protein Csa_4G026820 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 3.7e-07
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEI---DFVPPHLLA 42
          M VSLEALAMAGIDSNEWAMDA+EW+ N  ++   D +PPHLLA
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLA 44

[Close]

BLAST of Cla97C07G144390 vs. NCBI nr
Match: GAV84674.1 (hypothetical protein CFOL_v3_28116 [Cephalotus follicularis])

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLA 42
          MSVSLEALAMAG+D NEW +D +EWER + E    PPHLLA
Sbjct: 1  MSVSLEALAMAGLDYNEWGLDTEEWERKDLE-TMPPPHLLA 40

[Close]

BLAST of Cla97C07G144390 vs. NCBI nr
Match: ESR41421.1 (hypothetical protein CICLE_v10027431mg [Citrus clementina] >GAY59570.1 hypothetical protein CUMW_195420 [Citrus unshiu])

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-05
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLA 42
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLA
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELE-PPPHLLA 40

[Close]

BLAST of Cla97C07G144390 vs. TrEMBL
Match: tr|A0A0A0KWE7|A0A0A0KWE7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.4e-34
Identity = 90/140 (64.29%), Postives = 101/140 (72.14%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLAXXXXXXXXXXXXXXXXXVM 60
           MSVSLEALAMAGIDSNEWAMDA+EWERN  EID VPPHLLA                   
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERN--EIDVVPPHLLA-----DEEDDEDGDEHVTT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDG--VHCILGIFCSLSKAIERKASNGMNSVRIMVRT 120
           S +SNY FP+ G F     +D + DG   H ILGIFCSLSK IE++ASNGM+SVRI+VRT
Sbjct: 61  STISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRT 120

Query: 121 ILGFLMVMTIKIISAQTSKL 139
           ILGFLMVMT+KIISAQ SK+
Sbjct: 121 ILGFLMVMTMKIISAQRSKM 133

[Close]

BLAST of Cla97C07G144390 vs. TrEMBL
Match: tr|A0A0A0KU90|A0A0A0KU90_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-07
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEI---DFVPPHLLA 42
          M VSLEALAMAGIDSNEWAMDA+EW+ N  ++   D +PPHLLA
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLA 44

[Close]

BLAST of Cla97C07G144390 vs. TrEMBL
Match: tr|A0A1Q3CWR7|A0A1Q3CWR7_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-05
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLA 42
          MSVSLEALAMAG+D NEW +D +EWER + E    PPHLLA
Sbjct: 1  MSVSLEALAMAGLDYNEWGLDTEEWERKDLE-TMPPPHLLA 40

[Close]

BLAST of Cla97C07G144390 vs. TrEMBL
Match: tr|V4SW68|V4SW68_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027431mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-05
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLA 42
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLA
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELE-PPPHLLA 40

[Close]

BLAST of Cla97C07G144390 vs. TrEMBL
Match: tr|A0A2H5Q4J9|A0A2H5Q4J9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_195420 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-05
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLA 42
          MSVS+EALAMAG D  EW MD +EWER + E++  PPHLLA
Sbjct: 1  MSVSMEALAMAGADCYEWGMDVEEWEREDVELE-PPPHLLA 40

[Close]

BLAST of Cla97C07G144390 vs. TAIR10
Match: AT2G22320.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 2.7e-04
Identity = 20/37 (54.05%), Postives = 25/37 (67.57%), Query Frame = 0


Query: 5  LEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLA 42
          +EALAMAG+D  EW +  +EWE  E+    VP HLLA
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQES---VVPLHLLA 34

The following BLAST results are available for this feature:

BLAST of Cla97C07G144390 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53204.1	2.1e-34	64.29	hypothetical protein Csa_4G026810 [Cucumis sativus]	[more]
XP_022943015.1	7.2e-19	47.45	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]
KGN53205.1	3.7e-07	70.45	hypothetical protein Csa_4G026820 [Cucumis sativus]	[more]
GAV84674.1	1.5e-05	68.29	hypothetical protein CFOL_v3_28116 [Cephalotus follicularis]	[more]
ESR41421.1	3.4e-05	65.85	hypothetical protein CICLE_v10027431mg [Citrus clementina] >GAY59570.1 hypotheti...	[more]

BLAST of Cla97C07G144390 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KWE7\|A0A0A0KWE7_CUCSA	1.4e-34	64.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
tr\|A0A0A0KU90\|A0A0A0KU90_CUCSA	2.4e-07	70.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1	[more]
tr\|A0A1Q3CWR7\|A0A1Q3CWR7_CEPFO	1.0e-05	68.29	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4...	[more]
tr\|V4SW68\|V4SW68_9ROSI	2.3e-05	65.85	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027431mg PE=4 ...	[more]
tr\|A0A2H5Q4J9\|A0A2H5Q4J9_CITUN	2.3e-05	65.85	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_195420 PE=4 SV=1	[more]

BLAST of Cla97C07G144390 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C07G144390 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22320.1	2.7e-04	54.05	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G144390.1	Cla97C07G144390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..57

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C07G144390	Cla010676	Watermelon (97103) v1	wmwmbB174
Cla97C07G144390	Csa4G026810	Cucumber (Chinese Long) v2	cuwmbB316
Cla97C07G144390	MELO3C017608	Melon (DHL92) v3.5.1	mewmbB498
Cla97C07G144390	ClCG07G017350	Watermelon (Charleston Gray)	wcgwmbB307
Cla97C07G144390	CSPI04G04480	Wild cucumber (PI 183967)	cpiwmbB326
Cla97C07G144390	Cucsa.093760	Cucumber (Gy14) v1	cgywmbB112
Cla97C07G144390	CmaCh04G008160	Cucurbita maxima (Rimu)	cmawmbB784
Cla97C07G144390	CmaCh16G007030	Cucurbita maxima (Rimu)	cmawmbB354
Cla97C07G144390	CmoCh16G007600	Cucurbita moschata (Rifu)	cmowmbB339
Cla97C07G144390	Lsi07G001530	Bottle gourd (USVL1VR-Ls)	lsiwmbB406
Cla97C07G144390	CsGy4G004380	Cucumber (Gy14) v2	cgybwmbB298
Cla97C07G144390	MELO3C017608.2	Melon (DHL92) v3.6.1	medwmbB491
Cla97C07G144390	Carg05815	Silver-seed gourd	carwmbB1085
Cla97C07G144390	CsaV3_UNG120960	Cucumber (Chinese Long) v3	cucwmbB345
Cla97C07G144390	CsaV3_4G004580	Cucumber (Chinese Long) v3	cucwmbB324
Cla97C07G144390	CsaV3_UNG223590	Cucumber (Chinese Long) v3	cucwmbB349
Cla97C07G144390	Bhi01G001957	Wax gourd	wgowmbB222

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C07G144390	Silver-seed gourd	carwmbB0400
Cla97C07G144390	Silver-seed gourd	carwmbB0911
Cla97C07G144390	Silver-seed gourd	carwmbB0990
Cla97C07G144390	Cucurbita maxima (Rimu)	cmawmbB352
Cla97C07G144390	Cucurbita maxima (Rimu)	cmawmbB775
Cla97C07G144390	Cucurbita moschata (Rifu)	cmowmbB337
Cla97C07G144390	Cucurbita moschata (Rifu)	cmowmbB749
Cla97C07G144390	Cucurbita moschata (Rifu)	cmowmbB759
Cla97C07G144390	Cucumber (Chinese Long) v3	cucwmbB346