Carg05502 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05502
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rapid ALkalinization Factor
Location	Cucurbita_argyrosperma_scaffold_046 : 797936 .. 798313 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATCTCACGCGTTTCTGCTCTCATTGCTGCGTTCGCCGTTCTCGCCGCTCATTTTCTGATCTTATCGGCAACGGCCTTCTCCGGCGACAACGAGATTCTCTTTGCTCCGACTAAATCCGAGTGCCGAGGCTCAATCGCCGAGTGCTTTCTCGCTGGAAACGATGACGATTCCGGCTTCGGAATGGAGTTCGAGATGGACTCTGAAATCAATCGCCGAATTCTAGCGACTACTCGCTACATCAGCTATGGTGCTCTGAGGAGGAACAACGTTCCTTGCTCCCGCCGCGGCGCTTCTTACTACAACTGCCGTCCAGGCGCTCAGGCGAATCCTTACACCCGTGGTTGTAGCGCCATTACTCGCTGCCGAAGTTAA

mRNA sequence

ATGGGTATCTCACGCGTTTCTGCTCTCATTGCTGCGTTCGCCGTTCTCGCCGCTCATTTTCTGATCTTATCGGCAACGGCCTTCTCCGGCGACAACGAGATTCTCTTTGCTCCGACTAAATCCGAGTGCCGAGGCTCAATCGCCGAGTGCTTTCTCGCTGGAAACGATGACGATTCCGGCTTCGGAATGGAGTTCGAGATGGACTCTGAAATCAATCGCCGAATTCTAGCGACTACTCGCTACATCAGCTATGGTGCTCTGAGGAGGAACAACGTTCCTTGCTCCCGCCGCGGCGCTTCTTACTACAACTGCCGTCCAGGCGCTCAGGCGAATCCTTACACCCGTGGTTGTAGCGCCATTACTCGCTGCCGAAGTTAA

Coding sequence (CDS)

ATGGGTATCTCACGCGTTTCTGCTCTCATTGCTGCGTTCGCCGTTCTCGCCGCTCATTTTCTGATCTTATCGGCAACGGCCTTCTCCGGCGACAACGAGATTCTCTTTGCTCCGACTAAATCCGAGTGCCGAGGCTCAATCGCCGAGTGCTTTCTCGCTGGAAACGATGACGATTCCGGCTTCGGAATGGAGTTCGAGATGGACTCTGAAATCAATCGCCGAATTCTAGCGACTACTCGCTACATCAGCTATGGTGCTCTGAGGAGGAACAACGTTCCTTGCTCCCGCCGCGGCGCTTCTTACTACAACTGCCGTCCAGGCGCTCAGGCGAATCCTTACACCCGTGGTTGTAGCGCCATTACTCGCTGCCGAAGTTAA

Protein sequence

MGISRVSALIAAFAVLAAHFLILSATAFSGDNEILFAPTKSECRGSIAECFLAGNDDDSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS

Homology

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BLAST of Carg05502 vs. NCBI nr
Match: XP_022959207.1 (protein RALF-like 33 [Cucurbita moschata])

HSP 1 Score: 241.9 bits (616), Expect = 1.2e-60
Identity = 124/127 (97.64%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MGISRVSALIAAFAVLAAHFLILSATA--FSGDNEILFAPTKSECRGSIAECFLAGNDDD 60
           MGISRVSALIAAFAVLAAHFLILSA A  FSGDNEILFAPTKSECRGSIAECFLAGNDDD
Sbjct: 1   MGISRVSALIAAFAVLAAHFLILSAAAIDFSGDNEILFAPTKSECRGSIAECFLAGNDDD 60

Query: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120
           SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS
Sbjct: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120

Query: 121 AITRCRS 126
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Carg05502 vs. NCBI nr
Match: XP_023547686.1 (protein RALF-like 33 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 1.7e-59
Identity = 122/127 (96.06%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MGISRVSALIAAFAVLAAHFLILSATA--FSGDNEILFAPTKSECRGSIAECFLAGNDDD 60
           MGISRVSALIAAF VLAAHFLI SATA  FSGDNEILFAPTKSECRGSIAECFLAGN+DD
Sbjct: 1   MGISRVSALIAAFVVLAAHFLISSATAIDFSGDNEILFAPTKSECRGSIAECFLAGNNDD 60

Query: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120
           SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS
Sbjct: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120

Query: 121 AITRCRS 126
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Carg05502 vs. NCBI nr
Match: XP_023006467.1 (protein RALF-like 33 [Cucurbita maxima])

HSP 1 Score: 236.5 bits (602), Expect = 4.9e-59
Identity = 122/127 (96.06%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MGISRVSALIAAFAVLAAHFLILSATA--FSGDNEILFAPTKSECRGSIAECFLAGNDDD 60
           MGISRVSALIAAFAVLAAHFLI SATA  FSGDNEILFAPTKSECRGSI ECFLAGN DD
Sbjct: 1   MGISRVSALIAAFAVLAAHFLISSATAIDFSGDNEILFAPTKSECRGSITECFLAGNYDD 60

Query: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120
           SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS
Sbjct: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120

Query: 121 AITRCRS 126
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Carg05502 vs. NCBI nr
Match: XP_022138421.1 (protein RALF-like 33 [Momordica charantia])

HSP 1 Score: 199.5 bits (506), Expect = 6.6e-48
Identity = 102/127 (80.31%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MGISRVSALIAAFAVLAAHFLILSATA--FSGDNEILFAPTKSECRGSIAECFLAGNDDD 60
           M ISRVS+L+AAFA+ AAH L+ SATA  FSGD+++L+ P KSECRGSIAEC LAG  DD
Sbjct: 1   MEISRVSSLLAAFAIFAAHLLLSSATAADFSGDHKLLYVPAKSECRGSIAECLLAG--DD 60

Query: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120
           SGFG EFEMDSEINRRILAT RYISYGAL+RN+VPCSRRGASYYNC+PGAQANPY RGCS
Sbjct: 61  SGFGTEFEMDSEINRRILATMRYISYGALKRNSVPCSRRGASYYNCQPGAQANPYNRGCS 120

Query: 121 AITRCRS 126
           AITRCRS
Sbjct: 121 AITRCRS 125

[Close]

BLAST of Carg05502 vs. NCBI nr
Match: XP_023000591.1 (protein RALF-like 33 [Cucurbita maxima])

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 95/127 (74.80%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MGISRVSALIAAFAVLAAHFLILSATA--FSGDNEILFAPTKSECRGSIAECFLAGNDDD 60
           M ISRV + +AA A++AAHFL+ SA    FSGD+++LF P +S+CRGSIAECFLAG+D+D
Sbjct: 1   MEISRVFSFLAASAIIAAHFLLSSAMVVDFSGDDKLLFVPAESKCRGSIAECFLAGDDND 60

Query: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120
           S FGMEFEMDSEINRRILA +RY+SYGAL+RN+VPCSRRGASYYNC+PGAQANPY RGC+
Sbjct: 61  SAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCN 120

Query: 121 AITRCRS 126
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Carg05502 vs. TAIR10
Match: AT4G15800.1 (ralf-like 33)

HSP 1 Score: 144.4 bits (363), Expect = 4.6e-35
Identity = 74/111 (66.67%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 14  AVLAAHFLILSATAFSGDNEILFAPTKSECRGSIAECFLAGNDDDSGFGMEFEMDSEINR 73
           A+L  HFL  + T+ S  +   F P +S+C G+IAEC L+  ++      EFEMDSEINR
Sbjct: 14  AILTVHFLFAAVTSQSSGD---FVPIESKCNGTIAECSLSTAEE------EFEMDSEINR 73

Query: 74  RILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 125
           RILATT+YISYGALRRN VPCSRRGASYYNCR GAQANPY+RGCSAITRCR
Sbjct: 74  RILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of Carg05502 vs. TAIR10
Match: AT3G16570.1 (rapid alkalinization factor 23)

HSP 1 Score: 143.7 bits (361), Expect = 7.9e-35
Identity = 83/138 (60.14%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 2   GISRVSALIAAFA---VLAAH----FLILSATAFSGDNEILFAPTKSECRGSIAECFLAG 61
           G+SR S   A FA   +LA H     +   +T F+GD    F P ++ECRG+IAEC ++ 
Sbjct: 3   GLSRNSGAAAIFAILLILAVHNWSVAVSSQSTEFAGD----FPPFETECRGTIAECSVSA 62

Query: 62  NDDDSG--------FGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRP 121
              D G         G EFEMDSEINRRILAT RYISYGALRRN +PCSRRGASYYNCR 
Sbjct: 63  ALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRR 122

Query: 122 GAQANPYTRGCSAITRCR 125
           GAQANPY+RGCSAITRCR
Sbjct: 123 GAQANPYSRGCSAITRCR 136

[Close]

BLAST of Carg05502 vs. TAIR10
Match: AT1G02900.1 (rapid alkalinization factor 1)

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-27
Identity = 65/101 (64.36%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 25  ATAFSGDNEILFAPTKSECRGSIAECFLAGNDDDSGFGMEFEMDSEINRRILATTRYISY 84
           A A +GDN        S C GSIAEC  A          E EMDSEINRRILATT+YISY
Sbjct: 36  AWATTGDN-------GSGCHGSIAECIGA---------EEEEMDSEINRRILATTKYISY 95

Query: 85  GALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 126
            +L+RN+VPCSRRGASYYNC+ GAQANPY+RGCS I RCRS
Sbjct: 96  QSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCRS 120

[Close]

BLAST of Carg05502 vs. TAIR10
Match: AT3G05490.1 (ralf-like 22)

HSP 1 Score: 114.0 bits (284), Expect = 6.7e-26
Identity = 56/84 (66.67%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 41  SECRGSIAECFLAGNDDDSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGAS 100
           S C GSIAEC             E E DS+I+RRILA  +YISYGA+RRN+VPCSRRGAS
Sbjct: 43  SGCTGSIAECIAEEE--------EMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGAS 102

Query: 101 YYNCRPGAQANPYTRGCSAITRCR 125
           YYNC+ GAQANPY+RGCS ITRCR
Sbjct: 103 YYNCQRGAQANPYSRGCSTITRCR 118

[Close]

BLAST of Carg05502 vs. TAIR10
Match: AT2G33775.1 (ralf-like 19)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-18
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 63  MEFEMDSEINRRILATTR-YISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAIT 122
           +++ MDSE NRR LA  R YISYGALR+NNVPCSRRG SYY+C+   +ANPY RGCS IT
Sbjct: 44  LDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVIT 103

Query: 123 RC 124
            C
Sbjct: 104 HC 105

[Close]

BLAST of Carg05502 vs. Swiss-Prot
Match: sp|Q8L9P8|RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.3e-34
Identity = 74/111 (66.67%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 14  AVLAAHFLILSATAFSGDNEILFAPTKSECRGSIAECFLAGNDDDSGFGMEFEMDSEINR 73
           A+L  HFL  + T+ S  +   F P +S+C G+IAEC L+  ++      EFEMDSEINR
Sbjct: 14  AILTVHFLFAAVTSQSSGD---FVPIESKCNGTIAECSLSTAEE------EFEMDSEINR 73

Query: 74  RILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 125
           RILATT+YISYGALRRN VPCSRRGASYYNCR GAQANPY+RGCSAITRCR
Sbjct: 74  RILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of Carg05502 vs. Swiss-Prot
Match: sp|Q9LUS7|RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-33
Identity = 83/138 (60.14%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 2   GISRVSALIAAFA---VLAAH----FLILSATAFSGDNEILFAPTKSECRGSIAECFLAG 61
           G+SR S   A FA   +LA H     +   +T F+GD    F P ++ECRG+IAEC ++ 
Sbjct: 3   GLSRNSGAAAIFAILLILAVHNWSVAVSSQSTEFAGD----FPPFETECRGTIAECSVSA 62

Query: 62  NDDDSG--------FGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRP 121
              D G         G EFEMDSEINRRILAT RYISYGALRRN +PCSRRGASYYNCR 
Sbjct: 63  ALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRR 122

Query: 122 GAQANPYTRGCSAITRCR 125
           GAQANPY+RGCSAITRCR
Sbjct: 123 GAQANPYSRGCSAITRCR 136

[Close]

BLAST of Carg05502 vs. Swiss-Prot
Match: sp|Q945T0|RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-28
Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 15  VLAAHFLILSATAFSGDNE-ILFAPTKSECRGSIAECFLAGNDDDSGFGMEFEMDSEINR 74
           ++ A F+ ++A   SG  + ++ A +   C+GSI EC             EFE+DSE NR
Sbjct: 12  LIGAFFISMAAAGDSGAYDWVMPARSGGGCKGSIGECIAEEE--------EFELDSESNR 71

Query: 75  RILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 126
           RILAT +YISYGAL++N+VPCSRRGASYYNC+PGAQANPY+RGCSAITRCRS
Sbjct: 72  RILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115

[Close]

BLAST of Carg05502 vs. Swiss-Prot
Match: sp|Q9SRY3|RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.7e-26
Identity = 65/101 (64.36%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 25  ATAFSGDNEILFAPTKSECRGSIAECFLAGNDDDSGFGMEFEMDSEINRRILATTRYISY 84
           A A +GDN        S C GSIAEC  A          E EMDSEINRRILATT+YISY
Sbjct: 36  AWATTGDN-------GSGCHGSIAECIGA---------EEEEMDSEINRRILATTKYISY 95

Query: 85  GALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 126
            +L+RN+VPCSRRGASYYNC+ GAQANPY+RGCS I RCRS
Sbjct: 96  QSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCRS 120

[Close]

BLAST of Carg05502 vs. Swiss-Prot
Match: sp|Q9MA62|RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-24
Identity = 56/84 (66.67%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 41  SECRGSIAECFLAGNDDDSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGAS 100
           S C GSIAEC             E E DS+I+RRILA  +YISYGA+RRN+VPCSRRGAS
Sbjct: 43  SGCTGSIAECIAEEE--------EMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGAS 102

Query: 101 YYNCRPGAQANPYTRGCSAITRCR 125
           YYNC+ GAQANPY+RGCS ITRCR
Sbjct: 103 YYNCQRGAQANPYSRGCSTITRCR 118

[Close]

BLAST of Carg05502 vs. TrEMBL
Match: tr|A0A0A0KBU7|A0A0A0KBU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194150 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.8e-41
Identity = 93/127 (73.23%), Postives = 103/127 (81.10%), Query Frame = 0


Query: 1   MGISRVSALIAAFAVLAAHFLILSATA--FSGDNEILFAPTKSECRGSIAECFLAGNDDD 60
           MGISRVS+L+A F +LA HF+   A A  FSGD+E+LF PT S+            ++DD
Sbjct: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSD---------FFDDNDD 60

Query: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120
            GFGMEF+MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS
Sbjct: 61  FGFGMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 118

Query: 121 AITRCRS 126
           AITRCRS
Sbjct: 121 AITRCRS 118

[Close]

BLAST of Carg05502 vs. TrEMBL
Match: tr|A0A1S3C7V8|A0A1S3C7V8_CUCME (protein RALF-like 33 OS=Cucumis melo OX=3656 GN=LOC103497855 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.9e-41
Identity = 93/128 (72.66%), Postives = 106/128 (82.81%), Query Frame = 0


Query: 1   MGISRV-SALIAAFAVLAAHFLILSATA--FSGDNEILFAPTKSECRGSIAECFLAGNDD 60
           MGISRV S+L+AAF ++AAHFL+  A A  FSGD+++LF PT S+            ++D
Sbjct: 1   MGISRVSSSLLAAFLIIAAHFLVSMAAAVDFSGDHKLLFVPTTSD---------FFNDND 60

Query: 61  DSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGC 120
           D GFGMEF+MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPY+RGC
Sbjct: 61  DFGFGMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYSRGC 119

Query: 121 SAITRCRS 126
           SAITRCRS
Sbjct: 121 SAITRCRS 119

[Close]

BLAST of Carg05502 vs. TrEMBL
Match: tr|A0A2P4JLQ3|A0A2P4JLQ3_QUESU (Protein ralf-like 33 OS=Quercus suber OX=58331 GN=CFP56_28149 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35
Identity = 88/131 (67.18%), Postives = 101/131 (77.10%), Query Frame = 0


Query: 1   MGISRVSALIAAFAVLAAHF-LILSAT-----AFSGDN-EILFAPTKSECRGSIAECFLA 60
           MG S++ +     A+LA H  L +S+T     +  GD+ ++ FAP KSECRGSIAEC LA
Sbjct: 69  MGTSKLCSFF--LAILAVHLALSISSTKAVDLSGGGDHFQLGFAPIKSECRGSIAECLLA 128

Query: 61  GNDDDSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPY 120
           G DD+   G+EF MDSEINRRILAT RYISYGALRRN VPCSRRGASYYNCR GAQANPY
Sbjct: 129 GGDDEE-LGLEFAMDSEINRRILATRRYISYGALRRNTVPCSRRGASYYNCRAGAQANPY 188

Query: 121 TRGCSAITRCR 125
           +RGCSAITRCR
Sbjct: 189 SRGCSAITRCR 196

[Close]

BLAST of Carg05502 vs. TrEMBL
Match: tr|A0A2P5E484|A0A2P5E484_PARAD (Rapid ALkalinization Factor OS=Parasponia andersonii OX=3476 GN=PanWU01x14_008020 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.3e-35
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = 0


Query: 9   LIAAFAVLAAHFLILSATA--FSGDNEILFAPTKSECRGSIAECFLAGNDDDSGFGMEFE 68
           L+A  A+LA HF + S++A  F GD+++ +  + S CRGSIAEC +AG+DD     +E +
Sbjct: 13  LLAICAILAVHFALASSSALDFGGDHQLSWLSSGSVCRGSIAECLIAGDDD-----LEMQ 72

Query: 69  MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 125
           M+SE NRRILAT+RYISYGALRRN VPCSRRGASYYNCRPGAQANPY+RGCSAITRCR
Sbjct: 73  MNSESNRRILATSRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCR 125

[Close]

BLAST of Carg05502 vs. TrEMBL
Match: tr|A0A1U8KEA7|A0A1U8KEA7_GOSHI (protein RALF-like 33 OS=Gossypium hirsutum OX=3635 GN=LOC107916156 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.3e-35
Identity = 85/128 (66.41%), Postives = 94/128 (73.44%), Query Frame = 0


Query: 1   MGISRVS-ALIAAFAVLAAHFLILSATA---FSGDNEILFAPTKSECRGSIAECFLAGND 60
           MG SR S + IA  A+LA H    +++    F GD+   F P KSEC GSIAEC + G +
Sbjct: 1   MGSSRFSFSFIAICAILAIHVAASASSPMLDFGGDH---FLPIKSECGGSIAECLMLGGE 60

Query: 61  DDSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRG 120
           D S F  EF MDSEINRRILA  RYISYGALRRN VPCSRRGASYYNCRPGAQANPY+RG
Sbjct: 61  DSSEFDSEFAMDSEINRRILAARRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRG 120

Query: 121 CSAITRCR 125
           CS ITRCR
Sbjct: 121 CSRITRCR 125

The following BLAST results are available for this feature:

BLAST of Carg05502 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959207.1	1.2e-60	97.64	protein RALF-like 33 [Cucurbita moschata]	[more]
XP_023547686.1	1.7e-59	96.06	protein RALF-like 33 [Cucurbita pepo subsp. pepo]	[more]
XP_023006467.1	4.9e-59	96.06	protein RALF-like 33 [Cucurbita maxima]	[more]
XP_022138421.1	6.6e-48	80.31	protein RALF-like 33 [Momordica charantia]	[more]
XP_023000591.1	2.1e-46	74.80	protein RALF-like 33 [Cucurbita maxima]	[more]

BLAST of Carg05502 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15800.1	4.6e-35	66.67	ralf-like 33	[more]
AT3G16570.1	7.9e-35	60.14	rapid alkalinization factor 23	[more]
AT1G02900.1	2.1e-27	64.36	rapid alkalinization factor 1	[more]
AT3G05490.1	6.7e-26	66.67	ralf-like 22	[more]
AT2G33775.1	3.0e-18	67.74	ralf-like 19	[more]

BLAST of Carg05502 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L9P8\|RLF33_ARATH	8.3e-34	66.67	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]
sp\|Q9LUS7\|RLF23_ARATH	1.4e-33	60.14	Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV...	[more]
sp\|Q945T0\|RALF_TOBAC	1.4e-28	58.04	Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1	[more]
sp\|Q9SRY3\|RLF1_ARATH	3.7e-26	64.36	Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1	[more]
sp\|Q9MA62\|RLF22_ARATH	1.2e-24	66.67	Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1	[more]

BLAST of Carg05502 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBU7\|A0A0A0KBU7_CUCSA	1.8e-41	73.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194150 PE=4 SV=1	[more]
tr\|A0A1S3C7V8\|A0A1S3C7V8_CUCME	8.9e-41	72.66	protein RALF-like 33 OS=Cucumis melo OX=3656 GN=LOC103497855 PE=4 SV=1	[more]
tr\|A0A2P4JLQ3\|A0A2P4JLQ3_QUESU	1.1e-35	67.18	Protein ralf-like 33 OS=Quercus suber OX=58331 GN=CFP56_28149 PE=4 SV=1	[more]
tr\|A0A2P5E484\|A0A2P5E484_PARAD	3.3e-35	66.95	Rapid ALkalinization Factor OS=Parasponia andersonii OX=3476 GN=PanWU01x14_00802...	[more]
tr\|A0A1U8KEA7\|A0A1U8KEA7_GOSHI	7.3e-35	66.41	protein RALF-like 33 OS=Gossypium hirsutum OX=3635 GN=LOC107916156 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05502-RA	Carg05502-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 64..124 e-value: 1.9E-31 score: 108.6
None	No IPR available	PANTHER	PTHR33136:SF13	PROTEIN RALF-LIKE 22-RELATED	coord: 3..124
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 3..124

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05502	Cla019924	Watermelon (97103) v1	carwmB0071
Carg05502	Cla009305	Watermelon (97103) v1	carwmB0073
Carg05502	Cla021738	Watermelon (97103) v1	carwmB0070
Carg05502	Csa2G031140	Cucumber (Chinese Long) v2	carcuB0070
Carg05502	Csa6G194150	Cucumber (Chinese Long) v2	carcuB0080
Carg05502	MELO3C004224	Melon (DHL92) v3.5.1	carmeB0072
Carg05502	MELO3C021331	Melon (DHL92) v3.5.1	carmeB0067
Carg05502	ClCG06G005140	Watermelon (Charleston Gray)	carwcgB0073
Carg05502	ClCG02G015440	Watermelon (Charleston Gray)	carwcgB0071
Carg05502	CSPI06G14730	Wild cucumber (PI 183967)	carcpiB0084
Carg05502	CSPI02G04290	Wild cucumber (PI 183967)	carcpiB0073
Carg05502	Cucsa.091080	Cucumber (Gy14) v1	carcgyB0076
Carg05502	Cucsa.172250	Cucumber (Gy14) v1	carcgyB0079
Carg05502	CmaCh17G003240	Cucurbita maxima (Rimu)	carcmaB0091
Carg05502	CmaCh08G012260	Cucurbita maxima (Rimu)	carcmaB0096
Carg05502	CmaCh14G008930	Cucurbita maxima (Rimu)	carcmaB0089
Carg05502	CmoCh14G009220	Cucurbita moschata (Rifu)	carcmoB0095
Carg05502	CmoCh08G012000	Cucurbita moschata (Rifu)	carcmoB0104
Carg05502	CmoCh17G003110	Cucurbita moschata (Rifu)	carcmoB0097
Carg05502	Lsi11G005880	Bottle gourd (USVL1VR-Ls)	carlsiB062
Carg05502	Lsi09G014280	Bottle gourd (USVL1VR-Ls)	carlsiB061
Carg05502	Lsi03G010550	Bottle gourd (USVL1VR-Ls)	carlsiB064
Carg05502	Cp4.1LG17g00620	Cucurbita pepo (Zucchini)	carcpeB0102
Carg05502	Cp4.1LG12g02690	Cucurbita pepo (Zucchini)	carcpeB0099
Carg05502	Cp4.1LG11g09060	Cucurbita pepo (Zucchini)	carcpeB0098
Carg05502	Cp4.1LG07g08990	Cucurbita pepo (Zucchini)	carcpeB0108
Carg05502	CsGy6G014610	Cucumber (Gy14) v2	carcgybB0081
Carg05502	CsGy2G004400	Cucumber (Gy14) v2	carcgybB0070
Carg05502	MELO3C004224.2	Melon (DHL92) v3.6.1	carmedB0073
Carg05502	MELO3C021331.2	Melon (DHL92) v3.6.1	carmedB0068
Carg05502	CsaV3_2G006630	Cucumber (Chinese Long) v3	carcucB0077
Carg05502	CsaV3_6G017190	Cucumber (Chinese Long) v3	carcucB0088
Carg05502	Cla97C02G041210	Watermelon (97103) v2	carwmbB0068
Carg05502	Cla97C05G087570	Watermelon (97103) v2	carwmbB0069
Carg05502	Cla97C06G114640	Watermelon (97103) v2	carwmbB0070
Carg05502	Bhi12G001826	Wax gourd	carwgoB0084
Carg05502	Bhi01G000714	Wax gourd	carwgoB0086

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05502	Carg18842	Silver-seed gourd	carcarB085

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05502	Silver-seed gourd	carcarB083
Carg05502	Cucumber (Gy14) v2	carcgybB0072
Carg05502	Cucumber (Gy14) v1	carcgyB0083
Carg05502	Cucurbita maxima (Rimu)	carcmaB0090
Carg05502	Cucurbita maxima (Rimu)	carcmaB0094
Carg05502	Cucurbita moschata (Rifu)	carcmoB0096
Carg05502	Cucurbita moschata (Rifu)	carcmoB0102
Carg05502	Cucurbita pepo (Zucchini)	carcpeB0106
Carg05502	Cucurbita pepo (Zucchini)	carcpeB0109
Carg05502	Wild cucumber (PI 183967)	carcpiB0075
Carg05502	Cucumber (Chinese Long) v2	carcuB0071
Carg05502	Cucumber (Chinese Long) v3	carcucB0079
Carg05502	Bottle gourd (USVL1VR-Ls)	carlsiB065
Carg05502	Melon (DHL92) v3.5.1	carmeB0074
Carg05502	Melon (DHL92) v3.6.1	carmedB0075
Carg05502	Watermelon (Charleston Gray)	carwcgB0072