Carg18842 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18842
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rapid ALkalinization Factor
Location	Cucurbita_argyrosperma_scaffold_162 : 53145 .. 53528 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATCTCACGCGTTTTTTCCTTCCTCGCGGCCTCCGCCATTATCGCCGCTCACTTTCTGCTCTCATCGGCGATGGCCGTCGATTTCTCCGGCGGTGACAAACTCCTCTTCGTTCCGGCTGAGTCCAAGTGCAGAGGCTCTATCGCTGAATGCTTTCTCGCCGGAGATGACAATGATTCCGCCTTCGGAATGGAGTTCGAGATGGACTCTGAGATCAATCGCCGAATTCTAGCGGCTTCTCGCTACCTGAGCTATGGCGCTTTGAAAAGGAACAGCGTTCCTTGCTCTCGCCGCGGTGCTTCTTACTACAACTGCCAGCCTGGCGCTCAGGCCAATCCTTACAGACGCGGTTGCAACGCCATTACTCGCTGCCGGAGTTAA

mRNA sequence

ATGGAAATCTCACGCGTTTTTTCCTTCCTCGCGGCCTCCGCCATTATCGCCGCTCACTTTCTGCTCTCATCGGCGATGGCCGTCGATTTCTCCGGCGGTGACAAACTCCTCTTCGTTCCGGCTGAGTCCAAGTGCAGAGGCTCTATCGCTGAATGCTTTCTCGCCGGAGATGACAATGATTCCGCCTTCGGAATGGAGTTCGAGATGGACTCTGAGATCAATCGCCGAATTCTAGCGGCTTCTCGCTACCTGAGCTATGGCGCTTTGAAAAGGAACAGCGTTCCTTGCTCTCGCCGCGGTGCTTCTTACTACAACTGCCAGCCTGGCGCTCAGGCCAATCCTTACAGACGCGGTTGCAACGCCATTACTCGCTGCCGGAGTTAA

Coding sequence (CDS)

ATGGAAATCTCACGCGTTTTTTCCTTCCTCGCGGCCTCCGCCATTATCGCCGCTCACTTTCTGCTCTCATCGGCGATGGCCGTCGATTTCTCCGGCGGTGACAAACTCCTCTTCGTTCCGGCTGAGTCCAAGTGCAGAGGCTCTATCGCTGAATGCTTTCTCGCCGGAGATGACAATGATTCCGCCTTCGGAATGGAGTTCGAGATGGACTCTGAGATCAATCGCCGAATTCTAGCGGCTTCTCGCTACCTGAGCTATGGCGCTTTGAAAAGGAACAGCGTTCCTTGCTCTCGCCGCGGTGCTTCTTACTACAACTGCCAGCCTGGCGCTCAGGCCAATCCTTACAGACGCGGTTGCAACGCCATTACTCGCTGCCGGAGTTAA

Protein sequence

MEISRVFSFLAASAIIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDNDSAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCNAITRCRS

Homology

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BLAST of Carg18842 vs. NCBI nr
Match: XP_022930438.1 (protein RALF-like 33 [Cucurbita moschata] >XP_023514647.1 protein RALF-like 33 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.8 bits (639), Expect = 2.6e-63
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MEISRVFSFLAASAIIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDND 60
           MEISRVFSFLAASAIIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDND
Sbjct: 1   MEISRVFSFLAASAIIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDND 60

Query: 61  SAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCN 120
           SAFGMEFEMDSEINRRILA+SRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCN
Sbjct: 61  SAFGMEFEMDSEINRRILASSRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCN 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Carg18842 vs. NCBI nr
Match: XP_023000591.1 (protein RALF-like 33 [Cucurbita maxima])

HSP 1 Score: 247.7 bits (631), Expect = 2.2e-62
Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MEISRVFSFLAASAIIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDND 60
           MEISRVFSFLAASAIIAAHFLLSSAM VDFSG DKLLFVPAESKCRGSIAECFLAGDDND
Sbjct: 1   MEISRVFSFLAASAIIAAHFLLSSAMVVDFSGDDKLLFVPAESKCRGSIAECFLAGDDND 60

Query: 61  SAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCN 120
           SAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCN
Sbjct: 61  SAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCN 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Carg18842 vs. NCBI nr
Match: XP_022138421.1 (protein RALF-like 33 [Momordica charantia])

HSP 1 Score: 203.0 bits (515), Expect = 6.1e-49
Identity = 105/127 (82.68%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 1   MEISRVFSFLAASAIIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDND 60
           MEISRV S LAA AI AAH LLSSA A DFSG  KLL+VPA+S+CRGSIAEC LAGD  D
Sbjct: 1   MEISRVSSLLAAFAIFAAHLLLSSATAADFSGDHKLLYVPAKSECRGSIAECLLAGD--D 60

Query: 61  SAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCN 120
           S FG EFEMDSEINRRILA  RY+SYGALKRNSVPCSRRGASYYNCQPGAQANPY RGC+
Sbjct: 61  SGFGTEFEMDSEINRRILATMRYISYGALKRNSVPCSRRGASYYNCQPGAQANPYNRGCS 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 125

[Close]

BLAST of Carg18842 vs. NCBI nr
Match: XP_022959207.1 (protein RALF-like 33 [Cucurbita moschata])

HSP 1 Score: 202.6 bits (514), Expect = 8.0e-49
Identity = 96/127 (75.59%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MEISRVFSFLAASAIIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDND 60
           M ISRV + +AA A++AAHFL+ SA A+DFSG +++LF P +S+CRGSIAECFLAG+D+D
Sbjct: 1   MGISRVSALIAAFAVLAAHFLILSAAAIDFSGDNEILFAPTKSECRGSIAECFLAGNDDD 60

Query: 61  SAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCN 120
           S FGMEFEMDSEINRRILA +RY+SYGAL+RN+VPCSRRGASYYNC+PGAQANPY RGC+
Sbjct: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Carg18842 vs. NCBI nr
Match: XP_023547686.1 (protein RALF-like 33 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 1.8e-48
Identity = 95/127 (74.80%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MEISRVFSFLAASAIIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDND 60
           M ISRV + +AA  ++AAHFL+SSA A+DFSG +++LF P +S+CRGSIAECFLAG+++D
Sbjct: 1   MGISRVSALIAAFVVLAAHFLISSATAIDFSGDNEILFAPTKSECRGSIAECFLAGNNDD 60

Query: 61  SAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCN 120
           S FGMEFEMDSEINRRILA +RY+SYGAL+RN+VPCSRRGASYYNC+PGAQANPY RGC+
Sbjct: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 127

[Close]

BLAST of Carg18842 vs. TAIR10
Match: AT4G15800.1 (ralf-like 33)

HSP 1 Score: 138.3 bits (347), Expect = 3.4e-33
Identity = 73/113 (64.60%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 14  AIIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDNDSAFGMEFEMDSEI 73
           AI+  HFL   A     S GD   FVP ESKC G+IAEC L+  +       EFEMDSEI
Sbjct: 14  AILTVHFLF--AAVTSQSSGD---FVPIESKCNGTIAECSLSTAEE------EFEMDSEI 73

Query: 74  NRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCNAITRCR 127
           NRRILA ++Y+SYGAL+RN+VPCSRRGASYYNC+ GAQANPY RGC+AITRCR
Sbjct: 74  NRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of Carg18842 vs. TAIR10
Match: AT3G16570.1 (rapid alkalinization factor 23)

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-31
Identity = 72/129 (55.81%), Postives = 90/129 (69.77%), Query Frame = 0


Query: 8   SFLAASAIIAAH--FLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLA---GDDND-- 67
           +  A   I+A H   +  S+ + +F+G     F P E++CRG+IAEC ++   GD  D  
Sbjct: 12  AIFAILLILAVHNWSVAVSSQSTEFAGD----FPPFETECRGTIAECSVSAALGDGGDLF 71

Query: 68  ---SAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRR 127
                 G EFEMDSEINRRILA  RY+SYGAL+RN++PCSRRGASYYNC+ GAQANPY R
Sbjct: 72  YGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSR 131

[Close]

BLAST of Carg18842 vs. TAIR10
Match: AT3G05490.1 (ralf-like 22)

HSP 1 Score: 117.1 bits (292), Expect = 8.0e-27
Identity = 61/99 (61.62%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 33  GDKLLFVPAESK-----CRGSIAECFLAGDDNDSAFGMEFEMDSEINRRILAASRYLSYG 92
           GD L FV A S      C GSIAEC    +        E E DS+I+RRILA  +Y+SYG
Sbjct: 28  GDSLDFVRAGSSSLFSGCTGSIAECIAEEE--------EMEFDSDISRRILAQKKYISYG 87

Query: 93  ALKRNSVPCSRRGASYYNCQPGAQANPYRRGCNAITRCR 127
           A++RNSVPCSRRGASYYNCQ GAQANPY RGC+ ITRCR
Sbjct: 88  AMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCR 118

[Close]

BLAST of Carg18842 vs. TAIR10
Match: AT1G02900.1 (rapid alkalinization factor 1)

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-26
Identity = 58/85 (68.24%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 43  SKCRGSIAECFLAGDDNDSAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGAS 102
           S C GSIAEC  A ++         EMDSEINRRILA ++Y+SY +LKRNSVPCSRRGAS
Sbjct: 45  SGCHGSIAECIGAEEE---------EMDSEINRRILATTKYISYQSLKRNSVPCSRRGAS 104

Query: 103 YYNCQPGAQANPYRRGCNAITRCRS 128
           YYNCQ GAQANPY RGC+ I RCRS
Sbjct: 105 YYNCQNGAQANPYSRGCSKIARCRS 120

[Close]

BLAST of Carg18842 vs. TAIR10
Match: AT2G33775.1 (ralf-like 19)

HSP 1 Score: 87.0 bits (214), Expect = 8.9e-18
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 56  GDDNDSAFGMEFEMDSEINRRILAASR-YLSYGALKRNSVPCSRRGASYYNCQPGAQANP 115
           G+D +    +++ MDSE NRR LAA R Y+SYGAL++N+VPCSRRG SYY+C+   +ANP
Sbjct: 39  GEDGE----LDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANP 98

Query: 116 YRRGCNAITRC 126
           YRRGC+ IT C
Sbjct: 99  YRRGCSVITHC 105

[Close]

BLAST of Carg18842 vs. Swiss-Prot
Match: sp|Q8L9P8|RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.0e-32
Identity = 73/113 (64.60%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 14  AIIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDNDSAFGMEFEMDSEI 73
           AI+  HFL   A     S GD   FVP ESKC G+IAEC L+  +       EFEMDSEI
Sbjct: 14  AILTVHFLF--AAVTSQSSGD---FVPIESKCNGTIAECSLSTAEE------EFEMDSEI 73

Query: 74  NRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCNAITRCR 127
           NRRILA ++Y+SYGAL+RN+VPCSRRGASYYNC+ GAQANPY RGC+AITRCR
Sbjct: 74  NRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of Carg18842 vs. Swiss-Prot
Match: sp|Q9LUS7|RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.4e-30
Identity = 72/129 (55.81%), Postives = 90/129 (69.77%), Query Frame = 0


Query: 8   SFLAASAIIAAH--FLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLA---GDDND-- 67
           +  A   I+A H   +  S+ + +F+G     F P E++CRG+IAEC ++   GD  D  
Sbjct: 12  AIFAILLILAVHNWSVAVSSQSTEFAGD----FPPFETECRGTIAECSVSAALGDGGDLF 71

Query: 68  ---SAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRR 127
                 G EFEMDSEINRRILA  RY+SYGAL+RN++PCSRRGASYYNC+ GAQANPY R
Sbjct: 72  YGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSR 131

[Close]

BLAST of Carg18842 vs. Swiss-Prot
Match: sp|Q945T0|RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.1e-28
Identity = 63/113 (55.75%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 15  IIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDNDSAFGMEFEMDSEIN 74
           ++   F +S A A D    D ++   +   C+GSI EC    +        EFE+DSE N
Sbjct: 11  VLIGAFFISMAAAGDSGAYDWVMPARSGGGCKGSIGECIAEEE--------EFELDSESN 70

Query: 75  RRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCNAITRCRS 128
           RRILA  +Y+SYGAL++NSVPCSRRGASYYNC+PGAQANPY RGC+AITRCRS
Sbjct: 71  RRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115

[Close]

BLAST of Carg18842 vs. Swiss-Prot
Match: sp|Q9MA62|RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-25
Identity = 61/99 (61.62%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 33  GDKLLFVPAESK-----CRGSIAECFLAGDDNDSAFGMEFEMDSEINRRILAASRYLSYG 92
           GD L FV A S      C GSIAEC    +        E E DS+I+RRILA  +Y+SYG
Sbjct: 28  GDSLDFVRAGSSSLFSGCTGSIAECIAEEE--------EMEFDSDISRRILAQKKYISYG 87

Query: 93  ALKRNSVPCSRRGASYYNCQPGAQANPYRRGCNAITRCR 127
           A++RNSVPCSRRGASYYNCQ GAQANPY RGC+ ITRCR
Sbjct: 88  AMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCR 118

[Close]

BLAST of Carg18842 vs. Swiss-Prot
Match: sp|Q9SRY3|RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-25
Identity = 58/85 (68.24%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 43  SKCRGSIAECFLAGDDNDSAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGAS 102
           S C GSIAEC  A ++         EMDSEINRRILA ++Y+SY +LKRNSVPCSRRGAS
Sbjct: 45  SGCHGSIAECIGAEEE---------EMDSEINRRILATTKYISYQSLKRNSVPCSRRGAS 104

Query: 103 YYNCQPGAQANPYRRGCNAITRCRS 128
           YYNCQ GAQANPY RGC+ I RCRS
Sbjct: 105 YYNCQNGAQANPYSRGCSKIARCRS 120

[Close]

BLAST of Carg18842 vs. TrEMBL
Match: tr|A0A1S3C7V8|A0A1S3C7V8_CUCME (protein RALF-like 33 OS=Cucumis melo OX=3656 GN=LOC103497855 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.5e-37
Identity = 89/128 (69.53%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 1   MEISRV-FSFLAASAIIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDN 60
           M ISRV  S LAA  IIAAHFL+S A AVDFSG  KLLFVP  S             D++
Sbjct: 1   MGISRVSSSLLAAFLIIAAHFLVSMAAAVDFSGDHKLLFVPTTSD---------FFNDND 60

Query: 61  DSAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGC 120
           D  FGMEF+MDSEINRRILA +RY+SYGAL+RN+VPCSRRGASYYNC+PGAQANPY RGC
Sbjct: 61  DFGFGMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYSRGC 119

Query: 121 NAITRCRS 128
           +AITRCRS
Sbjct: 121 SAITRCRS 119

[Close]

BLAST of Carg18842 vs. TrEMBL
Match: tr|A0A0A0KBU7|A0A0A0KBU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194150 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.0e-36
Identity = 84/127 (66.14%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1   MEISRVFSFLAASAIIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDND 60
           M ISRV S LA   I+A HF+ S A AVDFSG  +LLFVP  S             D++D
Sbjct: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSD---------FFDDNDD 60

Query: 61  SAFGMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCN 120
             FGMEF+MDSEINRRILA +RY+SYGAL+RN+VPCSRRGASYYNC+PGAQANPY RGC+
Sbjct: 61  FGFGMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 118

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 118

[Close]

BLAST of Carg18842 vs. TrEMBL
Match: tr|A0A2P5E484|A0A2P5E484_PARAD (Rapid ALkalinization Factor OS=Parasponia andersonii OX=3476 GN=PanWU01x14_008020 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.1e-36
Identity = 79/123 (64.23%), Postives = 97/123 (78.86%), Query Frame = 0


Query: 4   SRVFSFLAASAIIAAHFLLSSAMAVDFSGGDKLLFVPAESKCRGSIAECFLAGDDNDSAF 63
           S  F  LA  AI+A HF L+S+ A+DF G  +L ++ + S CRGSIAEC +AGDD+    
Sbjct: 8   STTFRLLAICAILAVHFALASSSALDFGGDHQLSWLSSGSVCRGSIAECLIAGDDD---- 67

Query: 64  GMEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCNAIT 123
            +E +M+SE NRRILA SRY+SYGAL+RN+VPCSRRGASYYNC+PGAQANPY RGC+AIT
Sbjct: 68  -LEMQMNSESNRRILATSRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRGCSAIT 125

Query: 124 RCR 127
           RCR
Sbjct: 128 RCR 125

[Close]

BLAST of Carg18842 vs. TrEMBL
Match: tr|V4U0Q4|V4U0Q4_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006201mg PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35
Identity = 80/122 (65.57%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 7   FSFLAASAIIAAHFLLSSAMAVDFSG-GDKLLFVPAESKCRGSIAECF-LAGDDNDSAFG 66
           FS L A+ I+A H   SS+  VDF G G +L F+P +S+CRGSIAEC  + GDD D    
Sbjct: 9   FSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELD 68

Query: 67  MEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCNAITR 126
           +EF MD EINRRILA  RY+SYGAL+RNSVPCSRRGASYYNC+ G QANPY RGC+AITR
Sbjct: 69  LEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITR 128

[Close]

BLAST of Carg18842 vs. TrEMBL
Match: tr|A0A067G7V9|A0A067G7V9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032876mg PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35
Identity = 80/122 (65.57%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 7   FSFLAASAIIAAHFLLSSAMAVDFSG-GDKLLFVPAESKCRGSIAECF-LAGDDNDSAFG 66
           FS L A+ I+A H   SS+  VDF G G +L F+P +S+CRGSIAEC  + GDD D    
Sbjct: 9   FSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELD 68

Query: 67  MEFEMDSEINRRILAASRYLSYGALKRNSVPCSRRGASYYNCQPGAQANPYRRGCNAITR 126
           +EF MD EINRRILA  RY+SYGAL+RNSVPCSRRGASYYNC+ G QANPY RGC+AITR
Sbjct: 69  LEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITR 128

The following BLAST results are available for this feature:

BLAST of Carg18842 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930438.1	2.6e-63	99.21	protein RALF-like 33 [Cucurbita moschata] >XP_023514647.1 protein RALF-like 33 [...	[more]
XP_023000591.1	2.2e-62	98.43	protein RALF-like 33 [Cucurbita maxima]	[more]
XP_022138421.1	6.1e-49	82.68	protein RALF-like 33 [Momordica charantia]	[more]
XP_022959207.1	8.0e-49	75.59	protein RALF-like 33 [Cucurbita moschata]	[more]
XP_023547686.1	1.8e-48	74.80	protein RALF-like 33 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg18842 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15800.1	3.4e-33	64.60	ralf-like 33	[more]
AT3G16570.1	4.1e-31	55.81	rapid alkalinization factor 23	[more]
AT3G05490.1	8.0e-27	61.62	ralf-like 22	[more]
AT1G02900.1	1.8e-26	68.24	rapid alkalinization factor 1	[more]
AT2G33775.1	8.9e-18	59.15	ralf-like 19	[more]

BLAST of Carg18842 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L9P8\|RLF33_ARATH	6.0e-32	64.60	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]
sp\|Q9LUS7\|RLF23_ARATH	7.4e-30	55.81	Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV...	[more]
sp\|Q945T0\|RALF_TOBAC	4.1e-28	55.75	Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1	[more]
sp\|Q9MA62\|RLF22_ARATH	1.4e-25	61.62	Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1	[more]
sp\|Q9SRY3\|RLF1_ARATH	3.2e-25	68.24	Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1	[more]

BLAST of Carg18842 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C7V8\|A0A1S3C7V8_CUCME	3.5e-37	69.53	protein RALF-like 33 OS=Cucumis melo OX=3656 GN=LOC103497855 PE=4 SV=1	[more]
tr\|A0A0A0KBU7\|A0A0A0KBU7_CUCSA	3.0e-36	66.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194150 PE=4 SV=1	[more]
tr\|A0A2P5E484\|A0A2P5E484_PARAD	5.1e-36	64.23	Rapid ALkalinization Factor OS=Parasponia andersonii OX=3476 GN=PanWU01x14_00802...	[more]
tr\|V4U0Q4\|V4U0Q4_9ROSI	1.5e-35	65.57	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006201mg PE=4 ...	[more]
tr\|A0A067G7V9\|A0A067G7V9_CITSI	1.5e-35	65.57	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032876mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18842-RA	Carg18842-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 120..127
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 1..126
None	No IPR available	PANTHER	PTHR33136:SF13	PROTEIN RALF-LIKE 22-RELATED	coord: 1..126
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 66..126 e-value: 5.1E-30 score: 104.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18842	Cla009305	Watermelon (97103) v1	carwmB0701
Carg18842	Cla021738	Watermelon (97103) v1	carwmB0700
Carg18842	Csa6G194150	Cucumber (Chinese Long) v2	carcuB0725
Carg18842	MELO3C021331	Melon (DHL92) v3.5.1	carmeB0700
Carg18842	ClCG06G005140	Watermelon (Charleston Gray)	carwcgB0681
Carg18842	CSPI06G14730	Wild cucumber (PI 183967)	carcpiB0740
Carg18842	Cucsa.172250	Cucumber (Gy14) v1	carcgyB0786
Carg18842	CmaCh17G003240	Cucurbita maxima (Rimu)	carcmaB0985
Carg18842	CmaCh08G012260	Cucurbita maxima (Rimu)	carcmaB0988
Carg18842	CmoCh17G003110	Cucurbita moschata (Rifu)	carcmoB0958
Carg18842	CmoCh08G012000	Cucurbita moschata (Rifu)	carcmoB0960
Carg18842	Lsi09G014280	Bottle gourd (USVL1VR-Ls)	carlsiB641
Carg18842	Cp4.1LG17g00620	Cucurbita pepo (Zucchini)	carcpeB0985
Carg18842	Cp4.1LG12g02690	Cucurbita pepo (Zucchini)	carcpeB0984
Carg18842	CsGy6G014610	Cucumber (Gy14) v2	carcgybB0703
Carg18842	MELO3C021331.2	Melon (DHL92) v3.6.1	carmedB0713
Carg18842	CsaV3_6G017190	Cucumber (Chinese Long) v3	carcucB0743
Carg18842	Cla97C05G087570	Watermelon (97103) v2	carwmbB0734
Carg18842	Cla97C06G114640	Watermelon (97103) v2	carwmbB0735
Carg18842	Bhi12G001826	Wax gourd	carwgoB0827
Carg18842	Bhi01G000714	Wax gourd	carwgoB0828

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18842	Carg05502	Silver-seed gourd	carcarB085

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18842	Silver-seed gourd	carcarB543
Carg18842	Cucumber (Gy14) v2	carcgybB0700
Carg18842	Cucumber (Gy14) v1	carcgyB0788
Carg18842	Cucurbita maxima (Rimu)	carcmaB0984
Carg18842	Cucurbita maxima (Rimu)	carcmaB0986
Carg18842	Cucurbita moschata (Rifu)	carcmoB0957
Carg18842	Cucurbita moschata (Rifu)	carcmoB0959
Carg18842	Cucurbita pepo (Zucchini)	carcpeB0986
Carg18842	Cucurbita pepo (Zucchini)	carcpeB0987
Carg18842	Wild cucumber (PI 183967)	carcpiB0738
Carg18842	Cucumber (Chinese Long) v2	carcuB0723
Carg18842	Cucumber (Chinese Long) v3	carcucB0741
Carg18842	Bottle gourd (USVL1VR-Ls)	carlsiB642
Carg18842	Melon (DHL92) v3.5.1	carmeB0701
Carg18842	Melon (DHL92) v3.6.1	carmedB0714
Carg18842	Watermelon (Charleston Gray)	carwcgB0680