Cp4.1LG12g02690 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g02690
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRapid alkalinization factor
LocationCp4.1LG12 : 1829606 .. 1829989 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCTCACGCGTTTCTGCTCTCATTGCTGCGTTCGTCGTTCTCGCTGCTCATTTTCTGATTTCATCGGCAACGGCCATCGATTTCTCCGGCGACAACGAGATTCTCTTTGCTCCGACTAAATCCGAGTGCCGAGGCTCAATCGCTGAGTGCTTTCTCGCTGGAAACAATGACGATTCCGGCTTCGGAATGGAGTTCGAGATGGACTCTGAAATCAATCGCCGAATTCTAGCGACTACTCGCTACATCAGCTATGGTGCTCTGAGGAGGAACAACGTTCCTTGCTCCCGCCGCGGCGCTTCTTACTACAACTGCCGTCCAGGCGCTCAGGCGAATCCTTACACCCGTGGTTGTAGCGCCATTACTCGCTGCCGAAGTTAA

mRNA sequence

ATGGGAATCTCACGCGTTTCTGCTCTCATTGCTGCGTTCGTCGTTCTCGCTGCTCATTTTCTGATTTCATCGGCAACGGCCATCGATTTCTCCGGCGACAACGAGATTCTCTTTGCTCCGACTAAATCCGAGTGCCGAGGCTCAATCGCTGAGTGCTTTCTCGCTGGAAACAATGACGATTCCGGCTTCGGAATGGAGTTCGAGATGGACTCTGAAATCAATCGCCGAATTCTAGCGACTACTCGCTACATCAGCTATGGTGCTCTGAGGAGGAACAACGTTCCTTGCTCCCGCCGCGGCGCTTCTTACTACAACTGCCGTCCAGGCGCTCAGGCGAATCCTTACACCCGTGGTTGTAGCGCCATTACTCGCTGCCGAAGTTAA

Coding sequence (CDS)

ATGGGAATCTCACGCGTTTCTGCTCTCATTGCTGCGTTCGTCGTTCTCGCTGCTCATTTTCTGATTTCATCGGCAACGGCCATCGATTTCTCCGGCGACAACGAGATTCTCTTTGCTCCGACTAAATCCGAGTGCCGAGGCTCAATCGCTGAGTGCTTTCTCGCTGGAAACAATGACGATTCCGGCTTCGGAATGGAGTTCGAGATGGACTCTGAAATCAATCGCCGAATTCTAGCGACTACTCGCTACATCAGCTATGGTGCTCTGAGGAGGAACAACGTTCCTTGCTCCCGCCGCGGCGCTTCTTACTACAACTGCCGTCCAGGCGCTCAGGCGAATCCTTACACCCGTGGTTGTAGCGCCATTACTCGCTGCCGAAGTTAA

Protein sequence

MGISRVSALIAAFVVLAAHFLISSATAIDFSGDNEILFAPTKSECRGSIAECFLAGNNDDSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS
Homology
[Close]
BLAST of Cp4.1LG12g02690 vs. Swiss-Prot
Match: RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.7e-34
Identity = 82/138 (59.42%), Postives = 98/138 (71.01%), Query Frame = 1 

Query: 2   GISRVS---ALIAAFVVLAAH--FLISSATAIDFSGDNEILFAPTKSECRGSIAECFLAG 61
           G+SR S   A+ A  ++LA H   +  S+ + +F+GD    F P ++ECRG+IAEC ++ 
Sbjct: 3   GLSRNSGAAAIFAILLILAVHNWSVAVSSQSTEFAGD----FPPFETECRGTIAECSVSA 62

Query: 62  NNDDSG--------FGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRP 121
              D G         G EFEMDSEINRRILAT RYISYGALRRN +PCSRRGASYYNCR 
Sbjct: 63  ALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRR 122

Query: 122 GAQANPYTRGCSAITRCR 127
           GAQANPY+RGCSAITRCR
Sbjct: 123 GAQANPYSRGCSAITRCR 136

[Close]
BLAST of Cp4.1LG12g02690 vs. Swiss-Prot
Match: RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-33
Identity = 75/112 (66.96%), Postives = 86/112 (76.79%), Query Frame = 1 

Query: 15  VLAAHFLISSATAIDFSGDNEILFAPTKSECRGSIAECFLAGNNDDSGFGMEFEMDSEIN 74
           +L  HFL ++ T+   SGD    F P +S+C G+IAEC L+   +      EFEMDSEIN
Sbjct: 15  ILTVHFLFAAVTS-QSSGD----FVPIESKCNGTIAECSLSTAEE------EFEMDSEIN 74

Query: 75  RRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 127
           RRILATT+YISYGALRRN VPCSRRGASYYNCR GAQANPY+RGCSAITRCR
Sbjct: 75  RRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]
BLAST of Cp4.1LG12g02690 vs. Swiss-Prot
Match: RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-29
Identity = 68/113 (60.18%), Postives = 80/113 (70.80%), Query Frame = 1 

Query: 15  VLAAHFLISSATAIDFSGDNEILFAPTKSECRGSIAECFLAGNNDDSGFGMEFEMDSEIN 74
           VL   F IS A A D    + ++ A +   C+GSI EC             EFE+DSE N
Sbjct: 11  VLIGAFFISMAAAGDSGAYDWVMPARSGGGCKGSIGECIAEEE--------EFELDSESN 70

Query: 75  RRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 128
           RRILAT +YISYGAL++N+VPCSRRGASYYNC+PGAQANPY+RGCSAITRCRS
Sbjct: 71  RRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115

[Close]
BLAST of Cp4.1LG12g02690 vs. Swiss-Prot
Match: RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.1e-25
Identity = 67/123 (54.47%), Postives = 78/123 (63.41%), Query Frame = 1 

Query: 9   LIAAFVVLAAHFLISSATAIDFSGD-NEILFAPTK---SECRGSIAECFLAGNNDDSGFG 68
           L     +L    + S      F+ D   + +A T    S C GSIAEC  A         
Sbjct: 7   LFLTLTILVVFIISSPPVQAGFANDLGGVAWATTGDNGSGCHGSIAECIGAE-------- 66

Query: 69  MEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITR 128
            E EMDSEINRRILATT+YISY +L+RN+VPCSRRGASYYNC+ GAQANPY+RGCS I R
Sbjct: 67  -EEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIAR 120

[Close]
BLAST of Cp4.1LG12g02690 vs. Swiss-Prot
Match: RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.8e-24
Identity = 64/127 (50.39%), Postives = 79/127 (62.20%), Query Frame = 1 

Query: 3   ISRVSALIAAFVVLAAHFLISSATAIDFSGDNEILFAPTKS---ECRGSIAECFLAGNND 62
           ++   A+ A   +LA       +T  DF    + + A + S    C GSIAEC       
Sbjct: 1   MTNTRAIYAVIAILAIVISAVESTG-DFGDSLDFVRAGSSSLFSGCTGSIAECIAEEE-- 60

Query: 63  DSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGC 122
                 E E DS+I+RRILA  +YISYGA+RRN+VPCSRRGASYYNC+ GAQANPY+RGC
Sbjct: 61  ------EMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGC 118

Query: 123 SAITRCR 127
           S ITRCR
Sbjct: 121 STITRCR 118

[Close]
BLAST of Cp4.1LG12g02690 vs. TrEMBL
Match: A0A0A0KBU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G194150 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.6e-46
Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = 1 

Query: 1   MGISRVSALIAAFVVLAAHFLISSATAIDFSGDNEILFAPTKSECRGSIAECFLAGNNDD 60
           MGISRVS+L+A F++LA HF+ S A A+DFSGD+E+LF PT S+            +NDD
Sbjct: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSD---------FFDDNDD 60

Query: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120
            GFGMEF+MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS
Sbjct: 61  FGFGMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 118

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 118

[Close]
BLAST of Cp4.1LG12g02690 vs. TrEMBL
Match: A0A0D2TAB6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G190000 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.2e-36
Identity = 86/128 (67.19%), Postives = 94/128 (73.44%), Query Frame = 1 

Query: 1   MGISRVS-ALIAAFVVLAAHFLIS-SATAIDFSGDNEILFAPTKSECRGSIAECFLAGNN 60
           MG SR S + +A   +LA H   S S+  +DF GD+   F P KSEC GSIAEC +    
Sbjct: 25  MGSSRFSFSFLAICAILAIHVAASASSPMLDFGGDH---FLPIKSECGGSIAECLMLSGE 84

Query: 61  DDSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRG 120
           D S F  EF MDSEINRRILAT RYISYGALRRN VPCSRRGASYYNCRPGAQANPY+RG
Sbjct: 85  DSSEFDGEFAMDSEINRRILATRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRG 144

Query: 121 CSAITRCR 127
           CS ITRCR
Sbjct: 145 CSRITRCR 149

[Close]
BLAST of Cp4.1LG12g02690 vs. TrEMBL
Match: A0A061EQ76_THECC (Rapid alkalinization factor 1, putative OS=Theobroma cacao GN=TCM_021204 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-35
Identity = 85/129 (65.89%), Postives = 98/129 (75.97%), Query Frame = 1 

Query: 1   MGISRVS-ALIAAFVVLAAHFLIS-SATAIDFSGDNEILFAPTKSECRGSIAECF-LAGN 60
           MG SR S +L+A   +LA H  +S S+  +DF G ++  F P KSECRGSIAEC  L+G+
Sbjct: 1   MGSSRFSLSLLAICAILAVHVAVSASSPTLDFVGGDQ--FLPIKSECRGSIAECLMLSGD 60

Query: 61  NDDSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTR 120
              S F  EF M SEI RRILATTRYISYGALRRN VPCSRRGASYYNC+PGAQANPY+R
Sbjct: 61  ESSSDFDAEFAMGSEIYRRILATTRYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSR 120

Query: 121 GCSAITRCR 127
           GC+ ITRCR
Sbjct: 121 GCNRITRCR 127

[Close]
BLAST of Cp4.1LG12g02690 vs. TrEMBL
Match: V4U0Q4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006201mg PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-35
Identity = 82/130 (63.08%), Postives = 98/130 (75.38%), Query Frame = 1 

Query: 1   MGISRVSA--LIAAFVVLAAHFLISSATAIDFSG-DNEILFAPTKSECRGSIAECF-LAG 60
           M  S+ SA  L+ A ++LA H   SS++ +DF G  +++ F P KSECRGSIAEC  + G
Sbjct: 1   MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEG 60

Query: 61  NNDDSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYT 120
           ++ D    +EF MD EINRRILA  RYISYGALRRN+VPCSRRGASYYNCR G QANPY+
Sbjct: 61  DDGDQELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYS 120

Query: 121 RGCSAITRCR 127
           RGCSAITRCR
Sbjct: 121 RGCSAITRCR 130

[Close]
BLAST of Cp4.1LG12g02690 vs. TrEMBL
Match: A0A067G7V9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032876mg PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-35
Identity = 82/130 (63.08%), Postives = 98/130 (75.38%), Query Frame = 1 

Query: 1   MGISRVSA--LIAAFVVLAAHFLISSATAIDFSG-DNEILFAPTKSECRGSIAECF-LAG 60
           M  S+ SA  L+ A ++LA H   SS++ +DF G  +++ F P KSECRGSIAEC  + G
Sbjct: 1   MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEG 60

Query: 61  NNDDSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYT 120
           ++ D    +EF MD EINRRILA  RYISYGALRRN+VPCSRRGASYYNCR G QANPY+
Sbjct: 61  DDGDQELDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYS 120

Query: 121 RGCSAITRCR 127
           RGCSAITRCR
Sbjct: 121 RGCSAITRCR 130

[Close]
BLAST of Cp4.1LG12g02690 vs. TAIR10
Match: AT3G16570.1 (AT3G16570.1 rapid alkalinization factor 23)

HSP 1 Score: 145.6 bits (366), Expect = 2.1e-35
Identity = 82/138 (59.42%), Postives = 98/138 (71.01%), Query Frame = 1 

Query: 2   GISRVS---ALIAAFVVLAAH--FLISSATAIDFSGDNEILFAPTKSECRGSIAECFLAG 61
           G+SR S   A+ A  ++LA H   +  S+ + +F+GD    F P ++ECRG+IAEC ++ 
Sbjct: 3   GLSRNSGAAAIFAILLILAVHNWSVAVSSQSTEFAGD----FPPFETECRGTIAECSVSA 62

Query: 62  NNDDSG--------FGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRP 121
              D G         G EFEMDSEINRRILAT RYISYGALRRN +PCSRRGASYYNCR 
Sbjct: 63  ALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRR 122

Query: 122 GAQANPYTRGCSAITRCR 127
           GAQANPY+RGCSAITRCR
Sbjct: 123 GAQANPYSRGCSAITRCR 136

[Close]
BLAST of Cp4.1LG12g02690 vs. TAIR10
Match: AT4G15800.1 (AT4G15800.1 ralf-like 33)

HSP 1 Score: 143.7 bits (361), Expect = 8.0e-35
Identity = 75/112 (66.96%), Postives = 86/112 (76.79%), Query Frame = 1 

Query: 15  VLAAHFLISSATAIDFSGDNEILFAPTKSECRGSIAECFLAGNNDDSGFGMEFEMDSEIN 74
           +L  HFL ++ T+   SGD    F P +S+C G+IAEC L+   +      EFEMDSEIN
Sbjct: 15  ILTVHFLFAAVTS-QSSGD----FVPIESKCNGTIAECSLSTAEE------EFEMDSEIN 74

Query: 75  RRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 127
           RRILATT+YISYGALRRN VPCSRRGASYYNCR GAQANPY+RGCSAITRCR
Sbjct: 75  RRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]
BLAST of Cp4.1LG12g02690 vs. TAIR10
Match: AT1G02900.1 (AT1G02900.1 rapid alkalinization factor 1)

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-26
Identity = 67/123 (54.47%), Postives = 78/123 (63.41%), Query Frame = 1 

Query: 9   LIAAFVVLAAHFLISSATAIDFSGD-NEILFAPTK---SECRGSIAECFLAGNNDDSGFG 68
           L     +L    + S      F+ D   + +A T    S C GSIAEC  A         
Sbjct: 7   LFLTLTILVVFIISSPPVQAGFANDLGGVAWATTGDNGSGCHGSIAECIGAE-------- 66

Query: 69  MEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITR 128
            E EMDSEINRRILATT+YISY +L+RN+VPCSRRGASYYNC+ GAQANPY+RGCS I R
Sbjct: 67  -EEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIAR 120

[Close]
BLAST of Cp4.1LG12g02690 vs. TAIR10
Match: AT3G05490.1 (AT3G05490.1 ralf-like 22)

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-25
Identity = 64/127 (50.39%), Postives = 79/127 (62.20%), Query Frame = 1 

Query: 3   ISRVSALIAAFVVLAAHFLISSATAIDFSGDNEILFAPTKS---ECRGSIAECFLAGNND 62
           ++   A+ A   +LA       +T  DF    + + A + S    C GSIAEC       
Sbjct: 1   MTNTRAIYAVIAILAIVISAVESTG-DFGDSLDFVRAGSSSLFSGCTGSIAECIAEEE-- 60

Query: 63  DSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGC 122
                 E E DS+I+RRILA  +YISYGA+RRN+VPCSRRGASYYNC+ GAQANPY+RGC
Sbjct: 61  ------EMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGC 118

Query: 123 SAITRCR 127
           S ITRCR
Sbjct: 121 STITRCR 118

[Close]
BLAST of Cp4.1LG12g02690 vs. TAIR10
Match: AT2G33775.1 (AT2G33775.1 ralf-like 19)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-18
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 1 

Query: 65  MEFEMDSEINRRILATTR-YISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAIT 124
           +++ MDSE NRR LA  R YISYGALR+NNVPCSRRG SYY+C+   +ANPY RGCS IT
Sbjct: 44  LDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVIT 103

Query: 125 RC 126
            C
Sbjct: 104 HC 105

[Close]
BLAST of Cp4.1LG12g02690 vs. NCBI nr
Match: gi|449450680|ref|XP_004143090.1| (PREDICTED: protein RALF-like 33 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 9.5e-46
Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = 1 

Query: 1   MGISRVSALIAAFVVLAAHFLISSATAIDFSGDNEILFAPTKSECRGSIAECFLAGNNDD 60
           MGISRVS+L+A F++LA HF+ S A A+DFSGD+E+LF PT S+            +NDD
Sbjct: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSD---------FFDDNDD 60

Query: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120
            GFGMEF+MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS
Sbjct: 61  FGFGMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 118

Query: 121 AITRCRS 128
           AITRCRS
Sbjct: 121 AITRCRS 118

[Close]
BLAST of Cp4.1LG12g02690 vs. NCBI nr
Match: gi|659117160|ref|XP_008458453.1| (PREDICTED: protein RALF-like 33 [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 4.7e-45
Identity = 96/128 (75.00%), Postives = 110/128 (85.94%), Query Frame = 1 

Query: 1   MGISRVSA-LIAAFVVLAAHFLISSATAIDFSGDNEILFAPTKSECRGSIAECFLAGNND 60
           MGISRVS+ L+AAF+++AAHFL+S A A+DFSGD+++LF PT S+            +ND
Sbjct: 1   MGISRVSSSLLAAFLIIAAHFLVSMAAAVDFSGDHKLLFVPTTSD---------FFNDND 60

Query: 61  DSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGC 120
           D GFGMEF+MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPY+RGC
Sbjct: 61  DFGFGMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYSRGC 119

Query: 121 SAITRCRS 128
           SAITRCRS
Sbjct: 121 SAITRCRS 119

[Close]
BLAST of Cp4.1LG12g02690 vs. NCBI nr
Match: gi|823244996|ref|XP_012455175.1| (PREDICTED: protein RALF-like 33 [Gossypium raimondii])

HSP 1 Score: 158.3 bits (399), Expect = 8.9e-36
Identity = 86/128 (67.19%), Postives = 94/128 (73.44%), Query Frame = 1 

Query: 1   MGISRVS-ALIAAFVVLAAHFLIS-SATAIDFSGDNEILFAPTKSECRGSIAECFLAGNN 60
           MG SR S + +A   +LA H   S S+  +DF GD+   F P KSEC GSIAEC +    
Sbjct: 1   MGSSRFSFSFLAICAILAIHVAASASSPMLDFGGDH---FLPIKSECGGSIAECLMLSGE 60

Query: 61  DDSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRG 120
           D S F  EF MDSEINRRILAT RYISYGALRRN VPCSRRGASYYNCRPGAQANPY+RG
Sbjct: 61  DSSEFDGEFAMDSEINRRILATRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRG 120

Query: 121 CSAITRCR 127
           CS ITRCR
Sbjct: 121 CSRITRCR 125

[Close]
BLAST of Cp4.1LG12g02690 vs. NCBI nr
Match: gi|763805740|gb|KJB72678.1| (hypothetical protein B456_011G190000 [Gossypium raimondii])

HSP 1 Score: 158.3 bits (399), Expect = 8.9e-36
Identity = 86/128 (67.19%), Postives = 94/128 (73.44%), Query Frame = 1 

Query: 1   MGISRVS-ALIAAFVVLAAHFLIS-SATAIDFSGDNEILFAPTKSECRGSIAECFLAGNN 60
           MG SR S + +A   +LA H   S S+  +DF GD+   F P KSEC GSIAEC +    
Sbjct: 25  MGSSRFSFSFLAICAILAIHVAASASSPMLDFGGDH---FLPIKSECGGSIAECLMLSGE 84

Query: 61  DDSGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRG 120
           D S F  EF MDSEINRRILAT RYISYGALRRN VPCSRRGASYYNCRPGAQANPY+RG
Sbjct: 85  DSSEFDGEFAMDSEINRRILATRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRG 144

Query: 121 CSAITRCR 127
           CS ITRCR
Sbjct: 145 CSRITRCR 149

[Close]
BLAST of Cp4.1LG12g02690 vs. NCBI nr
Match: gi|720043259|ref|XP_010269500.1| (PREDICTED: rapid alkalinization factor-like [Nelumbo nucifera])

HSP 1 Score: 156.4 bits (394), Expect = 3.4e-35
Identity = 79/121 (65.29%), Postives = 91/121 (75.21%), Query Frame = 1 

Query: 7   SALIAAFVVLAAHFLISSATAIDFSGDNEILFAPTKSECRGSIAECFLAGNNDDSGFGME 66
           S     FVV     LISS+T ID SG+ ++ + PT+S C+GS+ EC   GN        E
Sbjct: 27  SGFFVMFVVFVTALLISSSTTIDASGEYQLGWLPTRSTCQGSMEECMAGGN--------E 86

Query: 67  FEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 126
           FEMDSEINRRILAT++YISYGAL+RN VPCSRRGASYYNC+PGAQANPY RGCSAITRCR
Sbjct: 87  FEMDSEINRRILATSQYISYGALQRNTVPCSRRGASYYNCKPGAQANPYNRGCSAITRCR 139

Query: 127 S 128
           S
Sbjct: 147 S 139

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g02690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLF23_ARATH3.7e-3459.42Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1[more]
RLF33_ARATH1.4e-3366.96Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1[more]
RALF_TOBAC1.2e-2960.18Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1[more]
RLF1_ARATH4.1e-2554.47Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1[more]
RLF22_ARATH7.8e-2450.39Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1[more]
BLAST of Cp4.1LG12g02690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBU7_CUCSA6.6e-4675.59Uncharacterized protein OS=Cucumis sativus GN=Csa_6G194150 PE=4 SV=1[more]
A0A0D2TAB6_GOSRA6.2e-3667.19Uncharacterized protein OS=Gossypium raimondii GN=B456_011G190000 PE=4 SV=1[more]
A0A061EQ76_THECC5.2e-3565.89Rapid alkalinization factor 1, putative OS=Theobroma cacao GN=TCM_021204 PE=4 SV... [more]
V4U0Q4_9ROSI5.2e-3563.08Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006201mg PE=4 SV=1[more]
A0A067G7V9_CITSI5.2e-3563.08Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032876mg PE=4 SV=1[more]
BLAST of Cp4.1LG12g02690 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G16570.12.1e-3559.42 rapid alkalinization factor 23[more]
AT4G15800.18.0e-3566.96 ralf-like 33[more]
AT1G02900.12.3e-2654.47 rapid alkalinization factor 1[more]
AT3G05490.14.4e-2550.39 ralf-like 22[more]
AT2G33775.13.0e-1867.74 ralf-like 19[more]
BLAST of Cp4.1LG12g02690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449450680|ref|XP_004143090.1|9.5e-4675.59PREDICTED: protein RALF-like 33 [Cucumis sativus][more]
gi|659117160|ref|XP_008458453.1|4.7e-4575.00PREDICTED: protein RALF-like 33 [Cucumis melo][more]
gi|823244996|ref|XP_012455175.1|8.9e-3667.19PREDICTED: protein RALF-like 33 [Gossypium raimondii][more]
gi|763805740|gb|KJB72678.1|8.9e-3667.19hypothetical protein B456_011G190000 [Gossypium raimondii][more]
gi|720043259|ref|XP_010269500.1|3.4e-3565.29PREDICTED: rapid alkalinization factor-like [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0019722 calcium-mediated signaling
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
cellular_component GO:0009506 plasmodesma
molecular_function GO:0003674 molecular_function
molecular_function GO:0004871 signal transducer activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g02690.1Cp4.1LG12g02690.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 66..126
score: 1.9
NoneNo IPR availablePANTHERPTHR33136FAMILY NOT NAMEDcoord: 3..127
score: 7.2
NoneNo IPR availablePANTHERPTHR33136:SF5PROTEIN RALF-LIKE 1-RELATEDcoord: 3..127
score: 7.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g02690Cucsa.172250Cucumber (Gy14) v1cgycpeB0472
Cp4.1LG12g02690CmaCh17G003240Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g02690CmaCh08G012260Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g02690CmoCh17G003110Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g02690CmoCh08G012000Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g02690Cla021738Watermelon (97103) v1cpewmB152
Cp4.1LG12g02690Cla009305Watermelon (97103) v1cpewmB161
Cp4.1LG12g02690Csa6G194150Cucumber (Chinese Long) v2cpecuB153
Cp4.1LG12g02690MELO3C021331Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g02690ClCG06G005140Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g02690CSPI06G14730Wild cucumber (PI 183967)cpecpiB155
Cp4.1LG12g02690Lsi09G014280Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g02690MELO3C004224.2Melon (DHL92) v3.6.1cpemedB169
Cp4.1LG12g02690MELO3C021331.2Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g02690CsaV3_2G006630Cucumber (Chinese Long) v3cpecucB0149
Cp4.1LG12g02690CsaV3_6G017190Cucumber (Chinese Long) v3cpecucB0177
Cp4.1LG12g02690Bhi01G000714Wax gourdcpewgoB0188
Cp4.1LG12g02690Bhi12G001826Wax gourdcpewgoB0181
Cp4.1LG12g02690CsGy6G014610Cucumber (Gy14) v2cgybcpeB734
Cp4.1LG12g02690CsGy2G004400Cucumber (Gy14) v2cgybcpeB179
Cp4.1LG12g02690Carg05502Silver-seed gourdcarcpeB0099
Cp4.1LG12g02690Carg18842Silver-seed gourdcarcpeB0984
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g02690Cp4.1LG11g09060Cucurbita pepo (Zucchini)cpecpeB109
Cp4.1LG12g02690Cp4.1LG17g00620Cucurbita pepo (Zucchini)cpecpeB158
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g02690Cucumber (Gy14) v2cgybcpeB303
Cp4.1LG12g02690Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g02690Silver-seed gourdcarcpeB0857
Cp4.1LG12g02690Cucumber (Chinese Long) v3cpecucB0154
Cp4.1LG12g02690Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g02690Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g02690Cucumber (Gy14) v1cgycpeB0671
Cp4.1LG12g02690Cucurbita maxima (Rimu)cmacpeB262
Cp4.1LG12g02690Cucurbita maxima (Rimu)cmacpeB810
Cp4.1LG12g02690Cucurbita moschata (Rifu)cmocpeB225
Cp4.1LG12g02690Wild cucumber (PI 183967)cpecpiB133
Cp4.1LG12g02690Cucumber (Chinese Long) v2cpecuB132
Cp4.1LG12g02690Bottle gourd (USVL1VR-Ls)cpelsiB118
Cp4.1LG12g02690Watermelon (Charleston Gray)cpewcgB139
Cp4.1LG12g02690Melon (DHL92) v3.5.1cpemeB140