CsaV3_6G017190 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G017190
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Rapid ALkalinization Factor
Location	chr6 : 12760556 .. 12763802 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATAAATTTCTTCACATTCATAATATAATCATAAAAGGGAAAAAGAAAAACTATAATTCAAGCGCGTGAATGTCAAGTGGCATTCTCGTAATTAATATGCAAAACAGTGGCATTTCTCTATAACCCTTCACTTTATATTCACGCACCACTTTCATCTCCGTTCCTCTCGAAACCAACGGGACTTTTGTATTCATCCTCCAAAAATGGGAATCTCACGCGTTTCTTCTCTCCTTGCCGTCTTCCTCATTCTCGCTCCTCATTTTGTCTTCTCCATGGCGGCCGCCGTCGATTTCTCTGGCGACCACGAGCTTCTCTTCGTTCCCACCACGTCCGATTTCTTCGACGACAACGATGATTTCGGTTTCGGAATGGAGTTCCAGATGGACTCTGAGATCAATCGCCGAATTCTGGCGACTACTCGTTACATAAGCTACGGTGCTCTTAGGAGGAACAATGTTCCTTGCTCTCGTCGTGGTGCTTCTTATTACAACTGCAGACCAGGTGCTCAGGCGAATCCTTACACCCGTGGTTGCAGCGCTATTACTCGCTGCAGAAGTTGATTTCGTTTCACTTGATTCATTTTTTGGAAGTTAGATTCGTCGTCGTACTCTTTCGGTTAGTTCTTCGTGTGTTTATACTGGATATACATGTCGATCGAGTAATAAAATTCATATATATACACTGATGGTTGAAAAATGTAATTTAATTTACATCTCTGTTTTCTCTGAGTCTTCTACATGATTTTTTTTTCCTTTTTCGTGGCTGATTCCTCTCGTTTATTTCCCAAATCATTTGTTCTTGTTTGGAATTGGTAATACAGTGGTAGGAAGGAACATATTATTTGTGTAAATTGCTGGTGGATCTTGCTGAATTTGCAAGGCCTTAGGCCATTATTATTTTGAGTTCTTCATTTATTCATTTATATATATTATATTATATATTTTTATTTACTTTCGTTGGTTGAAATTTTGGCTGTCACGTTTGGGCTATCTGAATCGATGCATTTTTTTTTAATATCTGAACAGAATGTTGAAACTTCCCAAAAACAATAATGATTGATTTTAATTTTACGGAATACTTTTTCCTCTTTACTACAACTTGATTTCTTTTCACCGTTCATATAGAAGAATAAAACATTAATCGACAAATTTTGATTAGACAATGCAACAAAATAGTAAATGCACACAGGTATTTTTCTTTTGATGTAGAACTTTTTGAAATTCTAAATACCTAGTATATATTAGAATATTACATATATCTTGAAAAAATGCATAAAATTACCATTGTGACAATCTTTAGAACATTGAATAATATCCGTTGAGGTTCTGAATGAATGCAAAAGGTATAAGAATCTAATGTATTCATCATCATCTTGACGAGTATTAAAGGTAATATTCTTGCAAGTTTATATAATGAAACAAAAGCTTACACATACTTTTCTATAATGAAGGAAATTAGATATAATCGAGCAATATTAAAAATTCCTTTTACTTCATTTTGGATTTATTAGTATAGAGTGAAGATGAAGGGAAAAAGGCGAAGCATGTGGAAGAGATTGGATTAGAATTAGTAGTGACGAAAAGTCCAAGTAATAGTGATTAAGAGGCAAGGTAATGAGTTTGGTTTAGCGTCACATGGCGGTCACTGGAAAGTCCAGTTTGCAAATTGCAATCAACGTCGACGCTCGTCTTTAATAATGAGATATCTTAGCTTTTCTGTTGGACGGGTTTATTAACATCCCTGTCTGTCGTTTTAGCATCCGTGAACCCCTCCTCTCCCTCTCGTCTTTCTCCAAAGTTGCGGGACCCACTCACCCACCCATCCATCCCTATGGCCTTTTTAGTTTTTATATGTAAAGTTAAAATTAAAATTAAAATTTAGCCGTTTTAATTATGGTGTGCCGTTACATTCCCATTTTTATGCTTCGGCATTGGAGAACGTGGAGTTCCAATTTTAAATATTCGATTTTCGAGGGAATAAATCTTTAATTCATATATATATATAAATTTTTGAGGTGGTAATTACATGGGTAATTTTAATAATGAGATGGGTAAATTGTTTTAGTTTGACATGAAAATAGTATTTAATATTGTGTAGCAAACTATAAAATATTGTAAATTTAAAATAGTAAAAATTGTAATGGATGAAATTTTTTTGTAATAATGTTTTATATAACTAATTTAATATTTACGGTAGTTATATGTGGTTATTATAATATTATATAATTTTTATTTCAATCGACTTCAACGAATTATGTTATTCAAAATTTCCTATCGTGAACATATAATTTTTATCTCAATCGACTTCAACGAATTATGTTATTCAAAATTTCCTATCGTGAAAAAAAATTGGAGTGCGTTGGATAAGTTGTGACATTGTTATCACTTTTGAAAATTTAATAATGTAGTGTAGAAAACATCTTTAAAAAATCGTAAATGTAACAAAATTTATTAACAATAGATATTTTGTCGATAGACTTTTATCATTGATATATTTTCTTATTTATGATTCTTACGAGCTGTGTGATCTATTATTAATTGGTTATGAATTTAAACTGAAATTTGATATATCTACAAAAAAAATATTTACATTGTGCTATGTCTACTAATATGTTTTATGTGCGGTTGCTAAATTTGCCACTTTTCACTTTATGTACGAGTTTTTTTTTAGTGCAATGACTAACAAGTGATAAAACACATTTGAAACTCTCAAGATGGAAAATCGTATCAATTAGCACGCTAATGGTTTAATAATTTAGATTTATTTAATAAAATATGCACCTCGTTTTTATAAAAGATATTAACGTTTGAGCAATATATATATATGCGTGTGTATAGGAGAGAAAAACTACAAGGGAAGAGGTGAAGTAATATAATTCCATCATGGAGTCAAACATTTTACACGTTCGATGATGAAGTGGCCTCCAGTGCATGCTTTCCTATTGGTCAGTACCAAAATAACGCCGTGTGGGACCTACTTTCCACGTCACTTACGAGCCCTATAGGCCCCGACGTGTCGTTTCTTTTGTTTCGTTTTCCTTGAAGGCTTCATTTCCATATACATTTGGCAGAGTTTGATAATCAGTAAATAGGTTTAGATCCTATTTTATTTATTTATATATATATTCAACTATTAACACTGCCTTGTTTCTCAACTCTTCGTGTTTAGGGAAGATTTGTATACAGATACTTTATAATGTTACTGTGAATCACATATTCTGCATATAGAGTTTAAATTTAGATCAAC

mRNA sequence

ATGGGAATCTCACGCGTTTCTTCTCTCCTTGCCGTCTTCCTCATTCTCGCTCCTCATTTTGTCTTCTCCATGGCGGCCGCCGTCGATTTCTCTGGCGACCACGAGCTTCTCTTCGTTCCCACCACGTCCGATTTCTTCGACGACAACGATGATTTCGGTTTCGGAATGGAGTTCCAGATGGACTCTGAGATCAATCGCCGAATTCTGGCGACTACTCGTTACATAAGCTACGGTGCTCTTAGGAGGAACAATGTTCCTTGCTCTCGTCGTGGTGCTTCTTATTACAACTGCAGACCAGGTGCTCAGGCGAATCCTTACACCCGTGGTTGCAGCGCTATTACTCGCTGCAGAAGTTGA

Coding sequence (CDS)

ATGGGAATCTCACGCGTTTCTTCTCTCCTTGCCGTCTTCCTCATTCTCGCTCCTCATTTTGTCTTCTCCATGGCGGCCGCCGTCGATTTCTCTGGCGACCACGAGCTTCTCTTCGTTCCCACCACGTCCGATTTCTTCGACGACAACGATGATTTCGGTTTCGGAATGGAGTTCCAGATGGACTCTGAGATCAATCGCCGAATTCTGGCGACTACTCGTTACATAAGCTACGGTGCTCTTAGGAGGAACAATGTTCCTTGCTCTCGTCGTGGTGCTTCTTATTACAACTGCAGACCAGGTGCTCAGGCGAATCCTTACACCCGTGGTTGCAGCGCTATTACTCGCTGCAGAAGTTGA

Protein sequence

MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS

Homology

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BLAST of CsaV3_6G017190 vs. NCBI nr
Match: XP_004143090.1 (PREDICTED: protein RALF-like 33 [Cucumis sativus] >KGN47180.1 hypothetical protein Csa_6G194150 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 1.2e-59
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQM 60
           MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQM
Sbjct: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQM 60

Query: 61  DSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 119
           DSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS
Sbjct: 61  DSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 118

[Close]

BLAST of CsaV3_6G017190 vs. NCBI nr
Match: XP_008458453.1 (PREDICTED: protein RALF-like 33 [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 5.9e-54
Identity = 110/119 (92.44%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MGISRV-SSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQ 60
           MGISRV SSLLA FLI+A HF+ SMAAAVDFSGDH+LLFVPTTSDFF+DNDDFGFGMEFQ
Sbjct: 1   MGISRVSSSLLAAFLIIAAHFLVSMAAAVDFSGDHKLLFVPTTSDFFNDNDDFGFGMEFQ 60

Query: 61  MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 119
           MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPY+RGCSAITRCRS
Sbjct: 61  MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYSRGCSAITRCRS 119

[Close]

BLAST of CsaV3_6G017190 vs. NCBI nr
Match: XP_023547686.1 (protein RALF-like 33 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSD---------FFDDNDD 60
           MGISRVS+L+A F++LA HF+ S A A+DFSGD+E+LF PT S+            +NDD
Sbjct: 1   MGISRVSALIAAFVVLAAHFLISSATAIDFSGDNEILFAPTKSECRGSIAECFLAGNNDD 60

Query: 61  FGFGMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 119
            GFGMEF+MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS
Sbjct: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120

[Close]

BLAST of CsaV3_6G017190 vs. NCBI nr
Match: XP_023006467.1 (protein RALF-like 33 [Cucurbita maxima])

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 97/127 (76.38%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSD--------FFDDN-DD 60
           MGISRVS+L+A F +LA HF+ S A A+DFSGD+E+LF PT S+        F   N DD
Sbjct: 1   MGISRVSALIAAFAVLAAHFLISSATAIDFSGDNEILFAPTKSECRGSITECFLAGNYDD 60

Query: 61  FGFGMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 119
            GFGMEF+MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS
Sbjct: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120

[Close]

BLAST of CsaV3_6G017190 vs. NCBI nr
Match: XP_022959207.1 (protein RALF-like 33 [Cucurbita moschata])

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 95/127 (74.80%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSD---------FFDDNDD 60
           MGISRVS+L+A F +LA HF+   AAA+DFSGD+E+LF PT S+            ++DD
Sbjct: 1   MGISRVSALIAAFAVLAAHFLILSAAAIDFSGDNEILFAPTKSECRGSIAECFLAGNDDD 60

Query: 61  FGFGMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 119
            GFGMEF+MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS
Sbjct: 61  SGFGMEFEMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCS 120

[Close]

BLAST of CsaV3_6G017190 vs. TAIR10
Match: AT3G16570.1 (rapid alkalinization factor 23)

HSP 1 Score: 121.7 bits (304), Expect = 3.0e-28
Identity = 73/134 (54.48%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 2   GISRVSSLLAVFLILAPHFVFSMAAAV-----DFSGD--------HELLFVPTTSDFFDD 61
           G+SR S   A+F IL    V + + AV     +F+GD           +   + S    D
Sbjct: 3   GLSRNSGAAAIFAILLILAVHNWSVAVSSQSTEFAGDFPPFETECRGTIAECSVSAALGD 62

Query: 62  NDDFGF-----GMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQA 118
             D  +     G EF+MDSEINRRILAT RYISYGALRRN +PCSRRGASYYNCR GAQA
Sbjct: 63  GGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQA 122

[Close]

BLAST of CsaV3_6G017190 vs. TAIR10
Match: AT4G15800.1 (ralf-like 33)

HSP 1 Score: 120.9 bits (302), Expect = 5.2e-28
Identity = 69/109 (63.30%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 12  VFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGM---EFQMDSEINRRI 71
           +  IL  HF+F+ A     SGD    FVP  S       +        EF+MDSEINRRI
Sbjct: 12  IIAILTVHFLFA-AVTSQSSGD----FVPIESKCNGTIAECSLSTAEEEFEMDSEINRRI 71

Query: 72  LATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 118
           LATT+YISYGALRRN VPCSRRGASYYNCR GAQANPY+RGCSAITRCR
Sbjct: 72  LATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of CsaV3_6G017190 vs. TAIR10
Match: AT1G02900.1 (rapid alkalinization factor 1)

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-24
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 57  EFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRC 116
           E +MDSEINRRILATT+YISY +L+RN+VPCSRRGASYYNC+ GAQANPY+RGCS I RC
Sbjct: 59  EEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARC 118

Query: 117 RS 119
           RS
Sbjct: 119 RS 120

[Close]

BLAST of CsaV3_6G017190 vs. TAIR10
Match: AT3G05490.1 (ralf-like 22)

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-23
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 57  EFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRC 116
           E + DS+I+RRILA  +YISYGA+RRN+VPCSRRGASYYNC+ GAQANPY+RGCS ITRC
Sbjct: 58  EMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRC 117

Query: 117 R 118
           R
Sbjct: 118 R 118

[Close]

BLAST of CsaV3_6G017190 vs. TAIR10
Match: AT2G33775.1 (ralf-like 19)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-18
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 56  MEFQMDSEINRRILATTR-YISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAIT 115
           +++ MDSE NRR LA  R YISYGALR+NNVPCSRRG SYY+C+   +ANPY RGCS IT
Sbjct: 44  LDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVIT 103

Query: 116 RC 117
            C
Sbjct: 104 HC 105

[Close]

BLAST of CsaV3_6G017190 vs. Swiss-Prot
Match: sp|Q9LUS7|RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.5e-27
Identity = 73/134 (54.48%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 2   GISRVSSLLAVFLILAPHFVFSMAAAV-----DFSGD--------HELLFVPTTSDFFDD 61
           G+SR S   A+F IL    V + + AV     +F+GD           +   + S    D
Sbjct: 3   GLSRNSGAAAIFAILLILAVHNWSVAVSSQSTEFAGDFPPFETECRGTIAECSVSAALGD 62

Query: 62  NDDFGF-----GMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQA 118
             D  +     G EF+MDSEINRRILAT RYISYGALRRN +PCSRRGASYYNCR GAQA
Sbjct: 63  GGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQA 122

[Close]

BLAST of CsaV3_6G017190 vs. Swiss-Prot
Match: sp|Q8L9P8|RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.4e-27
Identity = 69/109 (63.30%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 12  VFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGM---EFQMDSEINRRI 71
           +  IL  HF+F+ A     SGD    FVP  S       +        EF+MDSEINRRI
Sbjct: 12  IIAILTVHFLFA-AVTSQSSGD----FVPIESKCNGTIAECSLSTAEEEFEMDSEINRRI 71

Query: 72  LATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 118
           LATT+YISYGALRRN VPCSRRGASYYNCR GAQANPY+RGCSAITRCR
Sbjct: 72  LATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of CsaV3_6G017190 vs. Swiss-Prot
Match: sp|Q945T0|RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-24
Identity = 62/109 (56.88%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 12  VFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDN--DDFGFGMEFQMDSEINRRIL 71
           +  +L   F  SMAAA D SG ++ +    +      +  +      EF++DSE NRRIL
Sbjct: 8   ILCVLIGAFFISMAAAGD-SGAYDWVMPARSGGGCKGSIGECIAEEEEFELDSESNRRIL 67

Query: 72  ATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 119
           AT +YISYGAL++N+VPCSRRGASYYNC+PGAQANPY+RGCSAITRCRS
Sbjct: 68  ATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115

[Close]

BLAST of CsaV3_6G017190 vs. Swiss-Prot
Match: sp|Q9SRY3|RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.7e-23
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 57  EFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRC 116
           E +MDSEINRRILATT+YISY +L+RN+VPCSRRGASYYNC+ GAQANPY+RGCS I RC
Sbjct: 59  EEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARC 118

Query: 117 RS 119
           RS
Sbjct: 119 RS 120

[Close]

BLAST of CsaV3_6G017190 vs. Swiss-Prot
Match: sp|Q9MA62|RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.1e-22
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 57  EFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRC 116
           E + DS+I+RRILA  +YISYGA+RRN+VPCSRRGASYYNC+ GAQANPY+RGCS ITRC
Sbjct: 58  EMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRC 117

Query: 117 R 118
           R
Sbjct: 118 R 118

[Close]

BLAST of CsaV3_6G017190 vs. TrEMBL
Match: tr|A0A0A0KBU7|A0A0A0KBU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194150 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.1e-60
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQM 60
           MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQM
Sbjct: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQM 60

Query: 61  DSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 119
           DSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS
Sbjct: 61  DSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 118

[Close]

BLAST of CsaV3_6G017190 vs. TrEMBL
Match: tr|A0A1S3C7V8|A0A1S3C7V8_CUCME (protein RALF-like 33 OS=Cucumis melo OX=3656 GN=LOC103497855 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.9e-54
Identity = 110/119 (92.44%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MGISRV-SSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQ 60
           MGISRV SSLLA FLI+A HF+ SMAAAVDFSGDH+LLFVPTTSDFF+DNDDFGFGMEFQ
Sbjct: 1   MGISRVSSSLLAAFLIIAAHFLVSMAAAVDFSGDHKLLFVPTTSDFFNDNDDFGFGMEFQ 60

Query: 61  MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 119
           MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPY+RGCSAITRCRS
Sbjct: 61  MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYSRGCSAITRCRS 119

[Close]

BLAST of CsaV3_6G017190 vs. TrEMBL
Match: tr|A0A2P5E484|A0A2P5E484_PARAD (Rapid ALkalinization Factor OS=Parasponia andersonii OX=3476 GN=PanWU01x14_008020 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.0e-29
Identity = 73/116 (62.93%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 9   LLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTS-------DFFDDNDDFGFGMEFQMD 68
           LLA+  ILA HF  + ++A+DF GDH+L ++ + S       +     DD    +E QM+
Sbjct: 13  LLAICAILAVHFALASSSALDFGGDHQLSWLSSGSVCRGSIAECLIAGDD---DLEMQMN 72

Query: 69  SEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 118
           SE NRRILAT+RYISYGALRRN VPCSRRGASYYNCRPGAQANPY+RGCSAITRCR
Sbjct: 73  SESNRRILATSRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCR 125

[Close]

BLAST of CsaV3_6G017190 vs. TrEMBL
Match: tr|A5BUA5|A5BUA5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_037723 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.4e-29
Identity = 73/114 (64.04%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 7   SSLLAVFLILAPHFVFSMAAAVDFSGDH---ELLFVPTTSDFFDDNDDFGFGMEFQMDSE 66
           S+ + +  I+A H V + ++AVDFSGDH   +L ++P  S       +   G EF+MDSE
Sbjct: 5   SAFVLICAIMAVHMVLT-SSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFEMDSE 64

Query: 67  INRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 118
           INRRILA+ RYISYGAL RN+VPCSRRGASYYNCRPGAQANPYTRGCSAITRCR
Sbjct: 65  INRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 117

[Close]

BLAST of CsaV3_6G017190 vs. TrEMBL
Match: tr|F6HDF3|F6HDF3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g01490 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.4e-29
Identity = 73/114 (64.04%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 7   SSLLAVFLILAPHFVFSMAAAVDFSGDH---ELLFVPTTSDFFDDNDDFGFGMEFQMDSE 66
           S+ + +  I+A H V + ++AVDFSGDH   +L ++P  S       +   G EF+MDSE
Sbjct: 5   SAFVLICAIMAVHMVLT-SSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFEMDSE 64

Query: 67  INRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 118
           INRRILA+ RYISYGAL RN+VPCSRRGASYYNCRPGAQANPYTRGCSAITRCR
Sbjct: 65  INRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 117

The following BLAST results are available for this feature:

BLAST of CsaV3_6G017190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143090.1	1.2e-59	100.00	PREDICTED: protein RALF-like 33 [Cucumis sativus] >KGN47180.1 hypothetical prote...	[more]
XP_008458453.1	5.9e-54	92.44	PREDICTED: protein RALF-like 33 [Cucumis melo]	[more]
XP_023547686.1	1.3e-45	75.59	protein RALF-like 33 [Cucurbita pepo subsp. pepo]	[more]
XP_023006467.1	1.1e-44	76.38	protein RALF-like 33 [Cucurbita maxima]	[more]
XP_022959207.1	1.5e-44	74.80	protein RALF-like 33 [Cucurbita moschata]	[more]

BLAST of CsaV3_6G017190 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G16570.1	3.0e-28	54.48	rapid alkalinization factor 23	[more]
AT4G15800.1	5.2e-28	63.30	ralf-like 33	[more]
AT1G02900.1	2.0e-24	80.65	rapid alkalinization factor 1	[more]
AT3G05490.1	1.7e-23	77.05	ralf-like 22	[more]
AT2G33775.1	1.3e-18	67.74	ralf-like 19	[more]

BLAST of CsaV3_6G017190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LUS7\|RLF23_ARATH	5.5e-27	54.48	Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV...	[more]
sp\|Q8L9P8\|RLF33_ARATH	9.4e-27	63.30	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]
sp\|Q945T0\|RALF_TOBAC	1.1e-24	56.88	Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1	[more]
sp\|Q9SRY3\|RLF1_ARATH	3.7e-23	80.65	Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1	[more]
sp\|Q9MA62\|RLF22_ARATH	3.1e-22	77.05	Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1	[more]

BLAST of CsaV3_6G017190 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBU7\|A0A0A0KBU7_CUCSA	8.1e-60	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G194150 PE=4 SV=1	[more]
tr\|A0A1S3C7V8\|A0A1S3C7V8_CUCME	3.9e-54	92.44	protein RALF-like 33 OS=Cucumis melo OX=3656 GN=LOC103497855 PE=4 SV=1	[more]
tr\|A0A2P5E484\|A0A2P5E484_PARAD	2.0e-29	62.93	Rapid ALkalinization Factor OS=Parasponia andersonii OX=3476 GN=PanWU01x14_00802...	[more]
tr\|A5BUA5\|A5BUA5_VITVI	7.4e-29	64.04	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_037723 PE=4 SV=1	[more]
tr\|F6HDF3\|F6HDF3_VITVI	7.4e-29	64.04	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g01490 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0019722	calcium-mediated signaling
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004871	signal transducer activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G017190.1	CsaV3_6G017190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 57..117 e-value: 3.8E-31 score: 107.6
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 12..118
None	No IPR available	PANTHER	PTHR33136:SF5	PROTEIN RALF-LIKE 1	coord: 12..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G017190	CSPI06G14730	Wild cucumber (PI 183967)	cpicucB364
CsaV3_6G017190	Cucsa.172250	Cucumber (Gy14) v1	cgycucB275
CsaV3_6G017190	CmaCh17G003240	Cucurbita maxima (Rimu)	cmacucB0453
CsaV3_6G017190	CmaCh08G012260	Cucurbita maxima (Rimu)	cmacucB1076
CsaV3_6G017190	CmoCh17G003110	Cucurbita moschata (Rifu)	cmocucB0446
CsaV3_6G017190	CmoCh08G012000	Cucurbita moschata (Rifu)	cmocucB1058
CsaV3_6G017190	Cp4.1LG12g02690	Cucurbita pepo (Zucchini)	cpecucB0177
CsaV3_6G017190	Cp4.1LG17g00620	Cucurbita pepo (Zucchini)	cpecucB0407
CsaV3_6G017190	CsGy6G014610	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G017190	Carg05502	Silver-seed gourd	carcucB0088
CsaV3_6G017190	Carg18842	Silver-seed gourd	carcucB0743
CsaV3_6G017190	Cla021738	Watermelon (97103) v1	cucwmB523
CsaV3_6G017190	Cla009305	Watermelon (97103) v1	cucwmB566
CsaV3_6G017190	MELO3C021331	Melon (DHL92) v3.5.1	cucmeB450
CsaV3_6G017190	ClCG06G005140	Watermelon (Charleston Gray)	cucwcgB499
CsaV3_6G017190	Lsi09G014280	Bottle gourd (USVL1VR-Ls)	cuclsiB426
CsaV3_6G017190	MELO3C021331.2	Melon (DHL92) v3.6.1	cucmedB441
CsaV3_6G017190	Cla97C05G087570	Watermelon (97103) v2	cucwmbB485
CsaV3_6G017190	Cla97C06G114640	Watermelon (97103) v2	cucwmbB489
CsaV3_6G017190	Bhi12G001826	Wax gourd	cucwgoB554
CsaV3_6G017190	Bhi01G000714	Wax gourd	cucwgoB577

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None