Cucsa.172250 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.172250
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Rapid alkalinization factor
Location	scaffold01196 : 158129 .. 158485 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATCTCACGCGTTTCTTCTCTCCTTGCCGTCTTCCTCATTCTCGCTCCTCATTTTGTCTTCTCCATGGCGGCCGCCGTCGATTTCTCTGGCGACCACGAGCTTCTCTTCGTTCCCACCACGTCCGATTTCTTCGACGACAACGATGATTTCGGTTTCGGAATGGAGTTCCAGATGGACTCTGAGATCAATCGCCGAATTCTGGCGACTACTCGTTACATAAGCTACGGTGCTCTTAGGAGGAACAATGTTCCTTGCTCTCGTCGTGGTGCTTCTTATTACAACTGCAGACCAGGTGCTCAGGCGAATCCTTACACCCGTGGTTGCAGCGCTATTACTCGCTGCAGAAGTTGA

mRNA sequence

ATGGGAATCTCACGCGTTTCTTCTCTCCTTGCCGTCTTCCTCATTCTCGCTCCTCATTTTGTCTTCTCCATGGCGGCCGCCGTCGATTTCTCTGGCGACCACGAGCTTCTCTTCGTTCCCACCACGTCCGATTTCTTCGACGACAACGATGATTTCGGTTTCGGAATGGAGTTCCAGATGGACTCTGAGATCAATCGCCGAATTCTGGCGACTACTCGTTACATAAGCTACGGTGCTCTTAGGAGGAACAATGTTCCTTGCTCTCGTCGTGGTGCTTCTTATTACAACTGCAGACCAGGTGCTCAGGCGAATCCTTACACCCGTGGTTGCAGCGCTATTACTCGCTGCAGAAGTTGA

Coding sequence (CDS)

ATGGGAATCTCACGCGTTTCTTCTCTCCTTGCCGTCTTCCTCATTCTCGCTCCTCATTTTGTCTTCTCCATGGCGGCCGCCGTCGATTTCTCTGGCGACCACGAGCTTCTCTTCGTTCCCACCACGTCCGATTTCTTCGACGACAACGATGATTTCGGTTTCGGAATGGAGTTCCAGATGGACTCTGAGATCAATCGCCGAATTCTGGCGACTACTCGTTACATAAGCTACGGTGCTCTTAGGAGGAACAATGTTCCTTGCTCTCGTCGTGGTGCTTCTTATTACAACTGCAGACCAGGTGCTCAGGCGAATCCTTACACCCGTGGTTGCAGCGCTATTACTCGCTGCAGAAGTTGA

Protein sequence

MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS*

Homology

[Close]

BLAST of Cucsa.172250 vs. Swiss-Prot
Match: RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-28
Identity = 73/134 (54.48%), Postives = 85/134 (63.43%), Query Frame = 1


Query: 2   GISRVSSLLAVFLILAPHFVFSMAAAV-----DFSGDHE--------LLFVPTTSDFFDD 61
           G+SR S   A+F IL    V + + AV     +F+GD           +   + S    D
Sbjct: 3   GLSRNSGAAAIFAILLILAVHNWSVAVSSQSTEFAGDFPPFETECRGTIAECSVSAALGD 62

Query: 62  NDDFGFG-----MEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQA 118
             D  +G      EF+MDSEINRRILAT RYISYGALRRN +PCSRRGASYYNCR GAQA
Sbjct: 63  GGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQA 122

[Close]

BLAST of Cucsa.172250 vs. Swiss-Prot
Match: RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.9e-28
Identity = 69/109 (63.30%), Postives = 76/109 (69.72%), Query Frame = 1


Query: 12  VFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGM---EFQMDSEINRRI 71
           +  IL  HF+F+ A     SGD    FVP  S       +        EF+MDSEINRRI
Sbjct: 12  IIAILTVHFLFA-AVTSQSSGD----FVPIESKCNGTIAECSLSTAEEEFEMDSEINRRI 71

Query: 72  LATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 118
           LATT+YISYGALRRN VPCSRRGASYYNCR GAQANPY+RGCSAITRCR
Sbjct: 72  LATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of Cucsa.172250 vs. Swiss-Prot
Match: RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.0e-26
Identity = 62/109 (56.88%), Postives = 78/109 (71.56%), Query Frame = 1


Query: 12  VFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDN--DDFGFGMEFQMDSEINRRIL 71
           +  +L   F  SMAAA D SG ++ +    +      +  +      EF++DSE NRRIL
Sbjct: 8   ILCVLIGAFFISMAAAGD-SGAYDWVMPARSGGGCKGSIGECIAEEEEFELDSESNRRIL 67

Query: 72  ATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 119
           AT +YISYGAL++N+VPCSRRGASYYNC+PGAQANPY+RGCSAITRCRS
Sbjct: 68  ATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115

[Close]

BLAST of Cucsa.172250 vs. Swiss-Prot
Match: RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-23
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 1


Query: 57  EFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRC 116
           E +MDSEINRRILATT+YISY +L+RN+VPCSRRGASYYNC+ GAQANPY+RGCS I RC
Sbjct: 59  EEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARC 118

Query: 117 RS 119
           RS
Sbjct: 119 RS 120

[Close]

BLAST of Cucsa.172250 vs. Swiss-Prot
Match: RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-22
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 57  EFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRC 116
           E + DS+I+RRILA  +YISYGA+RRN+VPCSRRGASYYNC+ GAQANPY+RGCS ITRC
Sbjct: 58  EMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRC 117

Query: 117 R 118
           R
Sbjct: 118 R 118

[Close]

BLAST of Cucsa.172250 vs. TrEMBL
Match: A0A0A0KBU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G194150 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.0e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQM 60
           MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQM
Sbjct: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQM 60

Query: 61  DSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 119
           DSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS
Sbjct: 61  DSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 118

[Close]

BLAST of Cucsa.172250 vs. TrEMBL
Match: A5BUA5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037723 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-30
Identity = 73/114 (64.04%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 7   SSLLAVFLILAPHFVFSMAAAVDFSGDH---ELLFVPTTSDFFDDNDDFGFGMEFQMDSE 66
           S+ + +  I+A H V + ++AVDFSGDH   +L ++P  S       +   G EF+MDSE
Sbjct: 5   SAFVLICAIMAVHMVLT-SSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFEMDSE 64

Query: 67  INRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 118
           INRRILA+ RYISYGAL RN+VPCSRRGASYYNCRPGAQANPYTRGCSAITRCR
Sbjct: 65  INRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 117

[Close]

BLAST of Cucsa.172250 vs. TrEMBL
Match: F6HDF3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01490 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-30
Identity = 73/114 (64.04%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 7   SSLLAVFLILAPHFVFSMAAAVDFSGDH---ELLFVPTTSDFFDDNDDFGFGMEFQMDSE 66
           S+ + +  I+A H V + ++AVDFSGDH   +L ++P  S       +   G EF+MDSE
Sbjct: 5   SAFVLICAIMAVHMVLT-SSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFEMDSE 64

Query: 67  INRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 118
           INRRILA+ RYISYGAL RN+VPCSRRGASYYNCRPGAQANPYTRGCSAITRCR
Sbjct: 65  INRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 117

[Close]

BLAST of Cucsa.172250 vs. TrEMBL
Match: A0A0D2TAB6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G190000 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.8e-30
Identity = 79/128 (61.72%), Postives = 86/128 (67.19%), Query Frame = 1


Query: 1   MGISRVS-SLLAVFLILAPHFVFSMAAAV-DFSGDHELLFVPTTSD---------FFDDN 60
           MG SR S S LA+  ILA H   S ++ + DF GDH   F+P  S+              
Sbjct: 25  MGSSRFSFSFLAICAILAIHVAASASSPMLDFGGDH---FLPIKSECGGSIAECLMLSGE 84

Query: 61  DDFGFGMEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRG 118
           D   F  EF MDSEINRRILAT RYISYGALRRN VPCSRRGASYYNCRPGAQANPY+RG
Sbjct: 85  DSSEFDGEFAMDSEINRRILATRRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYSRG 144

[Close]

BLAST of Cucsa.172250 vs. TrEMBL
Match: A0A067G7V9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032876mg PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.0e-29
Identity = 72/121 (59.50%), Postives = 82/121 (67.77%), Query Frame = 1


Query: 8   SLLAVFLILAPHFVFSMAAAVDFSG-DHELLFVPTTSD----------FFDDNDDFGFGM 67
           SLL   +ILA H   S ++ VDF G  H+L F+P  S+             D+ D    +
Sbjct: 10  SLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELDL 69

Query: 68  EFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRC 118
           EF MD EINRRILA  RYISYGALRRN+VPCSRRGASYYNCR G QANPY+RGCSAITRC
Sbjct: 70  EFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRC 129

[Close]

BLAST of Cucsa.172250 vs. TAIR10
Match: AT3G16570.1 (AT3G16570.1 rapid alkalinization factor 23)

HSP 1 Score: 126.7 bits (317), Expect = 9.5e-30
Identity = 73/134 (54.48%), Postives = 85/134 (63.43%), Query Frame = 1


Query: 2   GISRVSSLLAVFLILAPHFVFSMAAAV-----DFSGDHE--------LLFVPTTSDFFDD 61
           G+SR S   A+F IL    V + + AV     +F+GD           +   + S    D
Sbjct: 3   GLSRNSGAAAIFAILLILAVHNWSVAVSSQSTEFAGDFPPFETECRGTIAECSVSAALGD 62

Query: 62  NDDFGFG-----MEFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQA 118
             D  +G      EF+MDSEINRRILAT RYISYGALRRN +PCSRRGASYYNCR GAQA
Sbjct: 63  GGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQA 122

[Close]

BLAST of Cucsa.172250 vs. TAIR10
Match: AT4G15800.1 (AT4G15800.1 ralf-like 33)

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-29
Identity = 69/109 (63.30%), Postives = 76/109 (69.72%), Query Frame = 1


Query: 12  VFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGM---EFQMDSEINRRI 71
           +  IL  HF+F+ A     SGD    FVP  S       +        EF+MDSEINRRI
Sbjct: 12  IIAILTVHFLFA-AVTSQSSGD----FVPIESKCNGTIAECSLSTAEEEFEMDSEINRRI 71

Query: 72  LATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 118
           LATT+YISYGALRRN VPCSRRGASYYNCR GAQANPY+RGCSAITRCR
Sbjct: 72  LATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of Cucsa.172250 vs. TAIR10
Match: AT1G02900.1 (AT1G02900.1 rapid alkalinization factor 1)

HSP 1 Score: 109.8 bits (273), Expect = 1.2e-24
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 1


Query: 57  EFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRC 116
           E +MDSEINRRILATT+YISY +L+RN+VPCSRRGASYYNC+ GAQANPY+RGCS I RC
Sbjct: 59  EEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARC 118

Query: 117 RS 119
           RS
Sbjct: 119 RS 120

[Close]

BLAST of Cucsa.172250 vs. TAIR10
Match: AT3G05490.1 (AT3G05490.1 ralf-like 22)

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-23
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 57  EFQMDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRC 116
           E + DS+I+RRILA  +YISYGA+RRN+VPCSRRGASYYNC+ GAQANPY+RGCS ITRC
Sbjct: 58  EMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRC 117

Query: 117 R 118
           R
Sbjct: 118 R 118

[Close]

BLAST of Cucsa.172250 vs. TAIR10
Match: AT2G33775.1 (AT2G33775.1 ralf-like 19)

HSP 1 Score: 90.5 bits (223), Expect = 7.5e-19
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 1


Query: 56  MEFQMDSEINRRILATTR-YISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAIT 115
           +++ MDSE NRR LA  R YISYGALR+NNVPCSRRG SYY+C+   +ANPY RGCS IT
Sbjct: 44  LDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVIT 103

Query: 116 RC 117
            C
Sbjct: 104 HC 105

[Close]

BLAST of Cucsa.172250 vs. NCBI nr
Match: gi|449450680|ref|XP_004143090.1| (PREDICTED: protein RALF-like 33 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 1.5e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQM 60
           MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQM
Sbjct: 1   MGISRVSSLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQM 60

Query: 61  DSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 119
           DSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS
Sbjct: 61  DSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 118

[Close]

BLAST of Cucsa.172250 vs. NCBI nr
Match: gi|659117160|ref|XP_008458453.1| (PREDICTED: protein RALF-like 33 [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 7.2e-56
Identity = 110/119 (92.44%), Postives = 115/119 (96.64%), Query Frame = 1


Query: 1   MGISRVS-SLLAVFLILAPHFVFSMAAAVDFSGDHELLFVPTTSDFFDDNDDFGFGMEFQ 60
           MGISRVS SLLA FLI+A HF+ SMAAAVDFSGDH+LLFVPTTSDFF+DNDDFGFGMEFQ
Sbjct: 1   MGISRVSSSLLAAFLIIAAHFLVSMAAAVDFSGDHKLLFVPTTSDFFNDNDDFGFGMEFQ 60

Query: 61  MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRS 119
           MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPY+RGCSAITRCRS
Sbjct: 61  MDSEINRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYSRGCSAITRCRS 119

[Close]

BLAST of Cucsa.172250 vs. NCBI nr
Match: gi|147862659|emb|CAN83593.1| (hypothetical protein VITISV_037723 [Vitis vinifera])

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-30
Identity = 73/114 (64.04%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 7   SSLLAVFLILAPHFVFSMAAAVDFSGDH---ELLFVPTTSDFFDDNDDFGFGMEFQMDSE 66
           S+ + +  I+A H V + ++AVDFSGDH   +L ++P  S       +   G EF+MDSE
Sbjct: 5   SAFVLICAIMAVHMVLT-SSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFEMDSE 64

Query: 67  INRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 118
           INRRILA+ RYISYGAL RN+VPCSRRGASYYNCRPGAQANPYTRGCSAITRCR
Sbjct: 65  INRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 117

[Close]

BLAST of Cucsa.172250 vs. NCBI nr
Match: gi|225432308|ref|XP_002273386.1| (PREDICTED: protein RALF-like 33 [Vitis vinifera])

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-30
Identity = 73/114 (64.04%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 7   SSLLAVFLILAPHFVFSMAAAVDFSGDH---ELLFVPTTSDFFDDNDDFGFGMEFQMDSE 66
           S+ + +  I+A H V + ++AVDFSGDH   +L ++P  S       +   G EF+MDSE
Sbjct: 5   SAFVLICAIMAVHMVLT-SSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFEMDSE 64

Query: 67  INRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 118
           INRRILA+ RYISYGAL RN+VPCSRRGASYYNCRPGAQANPYTRGCSAITRCR
Sbjct: 65  INRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 117

[Close]

BLAST of Cucsa.172250 vs. NCBI nr
Match: gi|297736875|emb|CBI26076.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-30
Identity = 73/114 (64.04%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 7   SSLLAVFLILAPHFVFSMAAAVDFSGDH---ELLFVPTTSDFFDDNDDFGFGMEFQMDSE 66
           S+ + +  I+A H V + ++AVDFSGDH   +L ++P  S       +   G EF+MDSE
Sbjct: 39  SAFVLICAIMAVHMVLT-SSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFEMDSE 98

Query: 67  INRRILATTRYISYGALRRNNVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 118
           INRRILA+ RYISYGAL RN+VPCSRRGASYYNCRPGAQANPYTRGCSAITRCR
Sbjct: 99  INRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 151

The following BLAST results are available for this feature:

BLAST of Cucsa.172250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLF23_ARATH	1.7e-28	54.48	Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1	[more]
RLF33_ARATH	2.9e-28	63.30	Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1	[more]
RALF_TOBAC	6.0e-26	56.88	Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1	[more]
RLF1_ARATH	2.1e-23	80.65	Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1	[more]
RLF22_ARATH	1.8e-22	77.05	Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1	[more]

BLAST of Cucsa.172250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBU7_CUCSA	1.0e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G194150 PE=4 SV=1	[more]
A5BUA5_VITVI	1.3e-30	64.04	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037723 PE=4 SV=1	[more]
F6HDF3_VITVI	1.3e-30	64.04	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01490 PE=4 SV=...	[more]
A0A0D2TAB6_GOSRA	2.8e-30	61.72	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G190000 PE=4 SV=1	[more]
A0A067G7V9_CITSI	4.0e-29	59.50	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032876mg PE=4 SV=1	[more]

BLAST of Cucsa.172250 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G16570.1	9.5e-30	54.48	rapid alkalinization factor 23	[more]
AT4G15800.1	1.6e-29	63.30	ralf-like 33	[more]
AT1G02900.1	1.2e-24	80.65	rapid alkalinization factor 1	[more]
AT3G05490.1	1.0e-23	77.05	ralf-like 22	[more]
AT2G33775.1	7.5e-19	67.74	ralf-like 19	[more]

BLAST of Cucsa.172250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450680\|ref\|XP_004143090.1\|	1.5e-61	100.00	PREDICTED: protein RALF-like 33 [Cucumis sativus]	[more]
gi\|659117160\|ref\|XP_008458453.1\|	7.2e-56	92.44	PREDICTED: protein RALF-like 33 [Cucumis melo]	[more]
gi\|147862659\|emb\|CAN83593.1\|	1.8e-30	64.04	hypothetical protein VITISV_037723 [Vitis vinifera]	[more]
gi\|225432308\|ref\|XP_002273386.1\|	1.8e-30	64.04	PREDICTED: protein RALF-like 33 [Vitis vinifera]	[more]
gi\|297736875\|emb\|CBI26076.3\|	1.8e-30	64.04	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.172250.1	Cucsa.172250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 57..117 score: 3.7
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 1..118 score: 2.2
None	No IPR available	PANTHER	PTHR33136:SF13	PROTEIN RALF-LIKE 22	coord: 1..118 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.172250	Cla009305	Watermelon (97103) v1	cgywmB329
Cucsa.172250	Cla021738	Watermelon (97103) v1	cgywmB327
Cucsa.172250	Csa6G194150	Cucumber (Chinese Long) v2	cgycuB262
Cucsa.172250	MELO3C021331	Melon (DHL92) v3.5.1	cgymeB305
Cucsa.172250	ClCG06G005140	Watermelon (Charleston Gray)	cgywcgB307
Cucsa.172250	CSPI06G14730	Wild cucumber (PI 183967)	cgycpiB270
Cucsa.172250	CmaCh17G003240	Cucurbita maxima (Rimu)	cgycmaB0485
Cucsa.172250	CmaCh08G012260	Cucurbita maxima (Rimu)	cgycmaB0489
Cucsa.172250	CmoCh17G003110	Cucurbita moschata (Rifu)	cgycmoB0488
Cucsa.172250	CmoCh08G012000	Cucurbita moschata (Rifu)	cgycmoB0491
Cucsa.172250	Lsi09G014280	Bottle gourd (USVL1VR-Ls)	cgylsiB285
Cucsa.172250	Cp4.1LG12g02690	Cucurbita pepo (Zucchini)	cgycpeB0472
Cucsa.172250	Cp4.1LG17g00620	Cucurbita pepo (Zucchini)	cgycpeB0474
Cucsa.172250	MELO3C021331.2	Melon (DHL92) v3.6.1	cgymedB297
Cucsa.172250	CsaV3_6G017190	Cucumber (Chinese Long) v3	cgycucB275
Cucsa.172250	Cla97C05G087570	Watermelon (97103) v2	cgywmbB311
Cucsa.172250	Cla97C06G114640	Watermelon (97103) v2	cgywmbB312
Cucsa.172250	Bhi01G000714	Wax gourd	cgywgoB353
Cucsa.172250	Bhi12G001826	Wax gourd	cgywgoB352
Cucsa.172250	Carg05502	Silver-seed gourd	carcgyB0079
Cucsa.172250	Carg18842	Silver-seed gourd	carcgyB0786

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None