Lsi05G020330 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G020330
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUvrABC system protein A
Locationchr05 : 27307057 .. 27309703 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAACCGGGGCGGCGAAACACGATTTCTTCTCCGTCGAAGCAGTTAATTTCGAAATTGAGAGGTGGAATTGATAGAGGGAACAGAAATGGTGAATCCGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCCTACTTTCTCTTAACCGCCGATTATGGCCCTCAACCCAATTTTCTCGATCCCGTGAGTACTCTAAACATCTCTCCCTTAAAAAATTTATTATCTGTTTGGTCGCCGAGAAAATCCATGGAAAAAGCACTAGGATCTTAGATTTTCAGTACGCCAGTTTCTTTTTACTATTCAGCAACCTAGGGATTGTTATTGTGCAATGTAACTCAGATTTGTTTGTAGAGTTTATTTGTGTGTGTTGTTTTTTCCACTGTGTTTTCGTTTATCTAGGCATTGATGAACTTCCTCTTATCTATATTCTTTTCAAGTGAAAATTGAATTTCGTTTGCAGTGGCTTCGTTTTTTGATCGATTTTCTTTTTATGCAAGTCGTGTAGTGTAGTTCAAGCTTTGTGGCTTTTGGATTTCCAGTCGTATTTTATTCAGTTATTGTTGTTAATTTTTGTTGACACTTGACAGTGTATAAGTCATTGTATATTTCGCCTTGCACTTGATTTTAGTGTGTAGAACCTAGGTTTTTCTAAATTCTTCATCGGTCCCGTTTTCCTCGCTAAATTGACAATTGTTTGACACGATATGTGTTTAGTTTATGATAATTTCATCTATCGTGTTGCAAATTTTTTGAGGCTTTAACTCTTCATTACATTGAGCTTTGATTAGATGAAAAAATTTCCTTCCAGTACCTTATCAAATTGAACAGAAAAAATGTATACGTTCATCTAATCTAGAATAAGAATAATCTGTACCTTGTGGTTTCATGAGTTGCTAATTACTATTTGTTATTTTGTTCGATTTTTGAGTCATCACTTTCAATGAAGCTTATGTCTTGCTAGATTTGTCTGTTGCTGATAATTTCTTGCTATTGCAGTGAGGTATGATAACTAAGAGTAAAGAGTGAAGTTTCCCTTTCTATTACAGTCAGAAGCAAGAAAACTTAGCATTTAACAAATTAATAATACAAGTTGAATTGAGAAGTCATTATGGTTTGCTTCTACATATAATTAACAACCGGAAACCATTGGATATTTCAGTTATTCACTACATAGGAAATCTTATGCTGTGATGGATTATTATGCATAAAATAATTATAATTTAAGCCCTGTTTGATTACTTTTTGGTTCTTGTTTTTGTTCTTTTGAAAATTAAGCCTGCCTATAAACATCACATCCATCTATTAGTTTATATGTTTTGTGATCTAGATTTTATGAGTGTTTTCAAAGTCAAAAACATATTTTGAAAAAAAAATAACAAAGTTTTCAAAAACTTGTTTTTGTTTTTGAAGATTGGCTAAGAATTCAAATGTTTATATAGGAAATATAAAAACAATGAGTAACAACTTGTGAGAAAACAACACAATTGTCAAAAATAAAAAAAAACAAAATGGTTACTAAATGGGAGTTTAGTGATCTATGGATTTTTATATGCTTGATTGGTGTTTGATCAAATTTTCAGATGTCTAGAAGATTGTACATATCGTTTTCAATTCTAATGGCTTACTTTGGGAATGGCAGATCAAAAAGTTTATACTGTCAGCAGAAAGTTCTATTAAGGGTTTCATCTTTGGACCAAATAATCAATCTCAAGAAAGTCGAAGAGAGAAGCTCGGCTCCAATGGTGTCAAGGACAATCCATGATAAGTAGACTTCAAGGATTTCGTTACGACTTTATGTATATATATCTTGAATCTACAGTTTTTTATTATACATTTCCTAAAGCTTAGTTTGAGATCAAGCATGAGTAAACCTTTTGGAGGAATCAAATAATGAAGTTTGTTTAGATTATAAGATGTTTAATGAATTGGTTATTACCAAATCCATTTAGCATATTAACCTCAGAGATTCAAATTACTTCCAGCATATTTCTGGATTGGTGTAGGTTCATTTTTTTTTCTTTTATTATCTGATAAGGCATGATATCTGTTAGGAGCCAAAGGTAGTATGGGCTACCTTTATCCCATATTGGTTAGAATGGGATGACCAATGTGGTACTCAAGTGGCTTAGCTCTCTCACTTCAATAGCTAGCTTTTGGGGTGTGGTTCTCCAAGGTGCTTAAGTACCTAACAATGGTATCAGAGCCGGTTGTTGACATTCTAGAGTGGAACTGGCGGACGGTTCTGACCGGGTGTGGCTGAGTGAAGTATCGTTGGAGTAGCCGCTGGGACGTCGGCTTTCCGGAGATGGGGTATTGTTAGGAACCAAGGTAGTATGGGCTACCTTTGTCCCACATTGGTTAGAATGGGATGACCAATGTGGTACTTAAGTGGCTTGGCTCTCCCACCTCAATAGCTAGCTTTTGGGGTGTGGTTCTCTAAGGTGCTTAAGTACTTAACAATATCATATCAAGTGGTTCATGAGAGACCACTCTTAGTTATTTTAAACTCCTGTAAAATATGAAGATAATTAGATTAGCTGTAGTTCTTGTAAATTCTTGTAAAGAATGAACATTCTTCTGATTTGGGAGTTTTAGTGAAATGTTATTTTGTGCTG

mRNA sequence

AAAAAAAAAAAAAAAACCGGGGCGGCGAAACACGATTTCTTCTCCGTCGAAGCAGTTAATTTCGAAATTGAGAGGTGGAATTGATAGAGGGAACAGAAATGGTGAATCCGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCCTACTTTCTCTTAACCGCCGATTATGGCCCTCAACCCAATTTTCTCGATCCCATCAAAAAGTTTATACTGTCAGCAGAAAGTTCTATTAAGGGTTTCATCTTTGGACCAAATAATCAATCTCAAGAAAGTCGAAGAGAGAAGCTCGGCTCCAATGGTGTCAAGGACAATCCATGATAAGTAGACTTCAAGGATTTCGTTACGACTTTATGTATATATATCTTGAATCTACAGTTTTTTATTATACATTTCCTAAAGCTTAGTTTGAGATCAAGCATGAGTAAACCTTTTGGAGGAATCAAATAATGAAGTTTGTTTAGATTATAAGATGTTTAATGAATTGGTTATTACCAAATCCATTTAGCATATTAACCTCAGAGATTCAAATTACTTCCAGCATATTTCTGGATTGGTGTAGGTTCATTTTTTTTTCTTTTATTATCTGATAAGGCATGATATCTGTTAGGAGCCAAAGGTAGTATGGGCTACCTTTATCCCATATTGGTTAGAATGGGATGACCAATGTGGTACTCAAGTGGCTTAGCTCTCTCACTTCAATAGCTAGCTTTTGGGGTGTGGTTCTCCAAGGTGCTTAAGTACCTAACAATGGTATCAGAGCCGGTTGTTGACATTCTAGAGTGGAACTGGCGGACGGTTCTGACCGGGTGTGGCTGAGTGAAGTATCGTTGGAGTAGCCGCTGGGACGTCGGCTTTCCGGAGATGGGGTATTGTTAGGAACCAAGGTAGTATGGGCTACCTTTGTCCCACATTGGTTAGAATGGGATGACCAATGTGGTACTTAAGTGGCTTGGCTCTCCCACCTCAATAGCTAGCTTTTGGGGTGTGGTTCTCTAAGGTGCTTAAGTACTTAACAATATCATATCAAGTGGTTCATGAGAGACCACTCTTAGTTATTTTAAACTCCTGTAAAATATGAAGATAATTAGATTAGCTGTAGTTCTTGTAAATTCTTGTAAAGAATGAACATTCTTCTGATTTGGGAGTTTTAGTGAAATGTTATTTTGTGCTG

Coding sequence (CDS)

ATGGTGAATCCGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCCTACTTTCTCTTAACCGCCGATTATGGCCCTCAACCCAATTTTCTCGATCCCATCAAAAAGTTTATACTGTCAGCAGAAAGTTCTATTAAGGGTTTCATCTTTGGACCAAATAATCAATCTCAAGAAAGTCGAAGAGAGAAGCTCGGCTCCAATGGTGTCAAGGACAATCCATGA

Protein sequence

MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSIKGFIFGPNNQSQESRREKLGSNGVKDNP
BLAST of Lsi05G020330 vs. TrEMBL
Match: A0A0A0L7H0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122460 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 9.8e-32
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 1

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSIKGFIFGPNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILSAESSIKGFIFG NN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQESRREKLGSNGVKDN 79
          QSQE +REKLGSNGVKDN
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

BLAST of Lsi05G020330 vs. TrEMBL
Match: A0A059CJG1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02283 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.6e-20
Identity = 48/66 (72.73%), Postives = 60/66 (90.91%), Query Frame = 1

Query: 1   MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSIKGFIFGPNN 60
           M+NPRTDKL+RRTTMVAT+TA+YFLLTADYGP+PN LDPIKK ILSAE+ +KGF+FG + 
Sbjct: 73  MMNPRTDKLVRRTTMVATITAAYFLLTADYGPEPNALDPIKKAILSAENRVKGFVFGSSE 132

Query: 61  QSQESR 67
           + +ES+
Sbjct: 133 KPRESQ 138

BLAST of Lsi05G020330 vs. TrEMBL
Match: A0A0S3SYV2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G152600 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.6e-20
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 1

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSIKGFIFGPNN 60
          ++NPRT+KL+RR T+VATVTASYFLLTADYGPQPN LDPIKK ILSA+S +KG+I G   
Sbjct: 3  LMNPRTEKLVRRLTIVATVTASYFLLTADYGPQPNALDPIKKQILSAQSMVKGYILGSKI 62

Query: 61 QSQESRREKLGSNGVKDNP 80
          +SQE++  KL SN  KD P
Sbjct: 63 ESQENQLGKLDSN--KDQP 79

BLAST of Lsi05G020330 vs. TrEMBL
Match: A0A068UMJ1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027936001 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-19
Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = 1

Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSIKGFIFGPNNQ 61
          +NP +DKL+RRT MVA+VTASYFLLTADYGP+PN LDPIK  ILSAE S+K FIFGP+  
Sbjct: 1  MNPNSDKLVRRTAMVASVTASYFLLTADYGPEPNVLDPIKNAILSAERSVKEFIFGPSKG 60

Query: 62 SQESRREKLGSNGVKDNP 80
           QE+  +KL SN  + +P
Sbjct: 61 IQENETKKLASNAGEKHP 78

BLAST of Lsi05G020330 vs. TrEMBL
Match: A0A151UCK2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_021322 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-19
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSIKGFIFGPNN 60
          ++NPRT+KL+RR T+V TV ASYFLLTADYGPQPN LDPIKK ILSAES++K ++FG   
Sbjct: 3  LMNPRTEKLVRRLTIVTTVAASYFLLTADYGPQPNALDPIKKQILSAESTVKEYVFGSKK 62

Query: 61 QSQESRREKLGSNGVKDNP 80
          +SQE++  KL SN  KD P
Sbjct: 63 ESQENQTGKLDSN--KDRP 79

BLAST of Lsi05G020330 vs. TAIR10
Match: AT4G00530.1 (AT4G00530.1 unknown protein)

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-19
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = 1

Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSIKGFIFGPNNQ 61
          +NP+TDK++RRTTMVAT  ASYFLLT DYGP+PN LDPIK+ IL+A+ S+K FIFGP  +
Sbjct: 1  MNPQTDKVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIKRKILAAQDSVKQFIFGPKGE 60

BLAST of Lsi05G020330 vs. TAIR10
Match: AT1G01725.1 (AT1G01725.1 unknown protein)

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-14
Identity = 35/63 (55.56%), Postives = 51/63 (80.95%), Query Frame = 1

Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSIKGFIFGPNNQ 61
          +NP+ +K+++ T++VAT   SYFLLTADYGP+PN LDPI++ ILSA+ S+K FIF P+ +
Sbjct: 1  MNPQIEKVVKVTSVVATAVVSYFLLTADYGPEPNALDPIRQRILSAQDSVKEFIF-PSKK 60

Query: 62 SQE 65
          S +
Sbjct: 61 SDK 62

BLAST of Lsi05G020330 vs. NCBI nr
Match: gi|659075274|ref|XP_008438057.1| (PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 1

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSIKGFIFGPNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILSAESSIKGFIFG NN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQESRREKLGSNGVKDN 79
          QSQE +REKLGSNGVKDN
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

BLAST of Lsi05G020330 vs. NCBI nr
Match: gi|778677234|ref|XP_011650756.1| (PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-31
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 1

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSIKGFIFGPNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILSAESSIKGFIFG NN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQESRREKLGSNGVKDN 79
          QSQE +REKLGSNGVKDN
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

BLAST of Lsi05G020330 vs. NCBI nr
Match: gi|1009172618|ref|XP_015867370.1| (PREDICTED: uncharacterized protein LOC107404888 [Ziziphus jujuba])

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-24
Identity = 60/79 (75.95%), Postives = 67/79 (84.81%), Query Frame = 1

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSIKGFIFGPNN 60
          M+ P+TDKL+RRT MVATVTASYFL+TADYGPQPN LDPIKK ILSAESS+K FIFG NN
Sbjct: 1  MLKPQTDKLVRRTAMVATVTASYFLITADYGPQPNALDPIKKAILSAESSVKEFIFGSNN 60

Query: 61 QSQESRREKLGSNGVKDNP 80
          QS+ES  EKLGS   K +P
Sbjct: 61 QSEESEIEKLGSESAKKHP 79

BLAST of Lsi05G020330 vs. NCBI nr
Match: gi|470142179|ref|XP_004306793.1| (PREDICTED: uncharacterized protein LOC101303265 [Fragaria vesca subsp. vesca])

HSP 1 Score: 105.1 bits (261), Expect = 5.5e-20
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 1

Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSIKGFIFGPNNQ 61
          +NP+ DKL+RRTT+VATVTASYFLLTADYG +PN LDPIKK I SAESS+K F+FG   Q
Sbjct: 1  MNPQMDKLVRRTTIVATVTASYFLLTADYGSEPNVLDPIKKAIQSAESSVKDFVFGSKTQ 60

Query: 62 SQESRREKLGSNGVKDNP 80
            ES  +KL SN  K++P
Sbjct: 61 PPESEVKKLSSNSAKEHP 78

BLAST of Lsi05G020330 vs. NCBI nr
Match: gi|629113100|gb|KCW78060.1| (hypothetical protein EUGRSUZ_D02283 [Eucalyptus grandis])

HSP 1 Score: 104.4 bits (259), Expect = 9.5e-20
Identity = 48/66 (72.73%), Postives = 60/66 (90.91%), Query Frame = 1

Query: 1   MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSIKGFIFGPNN 60
           M+NPRTDKL+RRTTMVAT+TA+YFLLTADYGP+PN LDPIKK ILSAE+ +KGF+FG + 
Sbjct: 73  MMNPRTDKLVRRTTMVATITAAYFLLTADYGPEPNALDPIKKAILSAENRVKGFVFGSSE 132

Query: 61  QSQESR 67
           + +ES+
Sbjct: 133 KPRESQ 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7H0_CUCSA9.8e-3292.31Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122460 PE=4 SV=1[more]
A0A059CJG1_EUCGR6.6e-2072.73Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02283 PE=4 SV=1[more]
A0A0S3SYV2_PHAAN8.6e-2068.35Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G152600 PE=... [more]
A0A068UMJ1_COFCA1.1e-1965.38Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027936001 PE=4 SV=1[more]
A0A151UCK2_CAJCA1.9e-1965.82Uncharacterized protein OS=Cajanus cajan GN=KK1_021322 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G00530.12.2e-1968.33 unknown protein[more]
AT1G01725.12.8e-1455.56 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659075274|ref|XP_008438057.1|1.1e-3192.31PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo][more]
gi|778677234|ref|XP_011650756.1|1.4e-3192.31PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus][more]
gi|1009172618|ref|XP_015867370.1|1.7e-2475.95PREDICTED: uncharacterized protein LOC107404888 [Ziziphus jujuba][more]
gi|470142179|ref|XP_004306793.1|5.5e-2066.67PREDICTED: uncharacterized protein LOC101303265 [Fragaria vesca subsp. vesca][more]
gi|629113100|gb|KCW78060.1|9.5e-2072.73hypothetical protein EUGRSUZ_D02283 [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G020330.1Lsi05G020330.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37696FAMILY NOT NAMEDcoord: 1..73
score: 7.0

The following gene(s) are paralogous to this gene:

None