Cucsa.258310 (gene) Cucumber (Gy14) v1

NameCucsa.258310
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUvrABC system protein A
Locationscaffold02229 : 5312835 .. 5313602 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
aTGGTGAATCAGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTTCTCGATCCTGTGAGTCCTCTATCCATCTCTCCCTCAAAATCTTTAATTGTCTGTTTGGTCGCCGGGAAAATCCATGCAAAAAACCACTAGGATCCTGGATTTTTAGTACGCCGGTTTCTTCTTACTATTCAGCAACCTAGGGATTGTTTATTGTGCAAATGTAACGCGGATTTGTTTGTAGAGTTTATTTGTCTTATCCGTATTCTCTTCAAGTGGAAATTAAATTGCGTTTGCAAGGGTTTGGATTTCTAATTGGTTATTCTTTTTATACGTGTCGTGTAGTCTAGTTCAAGCTTTGTGGTTCTTGGATTTCTAGTCGTATTTTTTATTCAGTTATTGTTCGTAATTTTTGTTGACTGTGTAGAATTTGTTGTTTATTATGCCTAGTACTTGATTTTAGTGTGGAAAACCTATGTTTTTTTTtCTAAATTCTTCGTCGGTCCTGTTTTCCTCGCTAAATTGACAGATGTTTAACACGATCCGTGTTTAGTTTATGATAAGCTCATCTAACGTGTTGTAAAATTGTTGAGGCTTTAACTCTACATTACATTGAGCTTAATTAAATGAAATTTTTTACTTCCAGTTCATTCTCAAATTGATAAAAAAAAaGATATATTACTTCATGTGATGATTCTGATCCATAATAAGAACAATCTGTAG

mRNA sequence

ATGGTGAATCAGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTTCTCGATCCTGTGAGTCCTCTATCCATCTCTCCCTCAAAATCTTTAATTGTCTTTCATTCTCAAATTGATAAAAAAAAAGATATATTACTTCATGTGATGATTCTGATCCATAATAAGAACAATCTGTAG

Coding sequence (CDS)

aTGGTGAATCAGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTTCTCGATCCTGTGAGTCCTCTATCCATCTCTCCCTCAAAATCTTTAATTGTCTTTCATTCTCAAATTGATAAAAAAAAaGATATATTACTTCATGTGATGATTCTGATCCATAATAAGAACAATCTGTAG

Protein sequence

MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVSPLSISPSKSLIVFHSQIDKKKDILLHVMILIHNKNNL*
BLAST of Cucsa.258310 vs. TrEMBL
Match: A0A0A0L7H0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122460 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-14
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 1

Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVSPLSISPSKSL 52
          MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPV  + +S   S+
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSI 51

BLAST of Cucsa.258310 vs. TrEMBL
Match: A0A061DTB9_THECC (UvrABC system protein A OS=Theobroma cacao GN=TCM_005347 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.3e-11
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 1

Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVSPLSISPSKSLIVF 55
          M+N R DKL+RRTTMVAT TASYFLLTADYGP+PN LDP+    +S   SL  F
Sbjct: 1  MMNPRADKLVRRTTMVATATASYFLLTADYGPEPNVLDPIKKAILSAQSSLKEF 54

BLAST of Cucsa.258310 vs. TrEMBL
Match: A0A059CJG1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02283 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-10
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1

Query: 1   MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVSPLSIS 47
           M+N RTDKL+RRTTMVAT+TA+YFLLTADYGP+PN LDP+    +S
Sbjct: 73  MMNPRTDKLVRRTTMVATITAAYFLLTADYGPEPNALDPIKKAILS 118

BLAST of Cucsa.258310 vs. TrEMBL
Match: A0A118JXN4_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_000663 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-10
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1

Query: 2  VNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVSPLSISPSKSL--IVFHSQID 61
          +N  TDKL+RRTTMVATVTA+YFLLTADYGP+PN LDP+     S  +S+   +F S+ +
Sbjct: 1  MNPNTDKLVRRTTMVATVTAAYFLLTADYGPEPNVLDPIKNTIQSAEQSVKKFIFGSKEE 60

Query: 62 KKK 63
           KK
Sbjct: 61 AKK 63

BLAST of Cucsa.258310 vs. TrEMBL
Match: A0A0B0NQ75_GOSAR (Adenylosuccinate synthetase OS=Gossypium arboreum GN=F383_10320 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1

Query: 2  VNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVSPLSISPSKSLIVF 55
          +N + DKL+RR TMVATVTASYFLLTADYGP+PN LDP+    +S   SL  F
Sbjct: 1  MNPQADKLVRRITMVATVTASYFLLTADYGPEPNVLDPIKKSILSAQSSLKEF 53

BLAST of Cucsa.258310 vs. TAIR10
Match: AT4G00530.1 (AT4G00530.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-11
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1

Query: 2  VNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVSPLSISPSKSLIVF 55
          +N +TDK++RRTTMVAT  ASYFLLT DYGP+PN LDP+    ++   S+  F
Sbjct: 1  MNPQTDKVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIKRKILAAQDSVKQF 53

BLAST of Cucsa.258310 vs. TAIR10
Match: AT1G01725.1 (AT1G01725.1 unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-08
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1

Query: 2  VNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVSPLSISPSKSLIVF 55
          +N + +K+++ T++VAT   SYFLLTADYGP+PN LDP+    +S   S+  F
Sbjct: 1  MNPQIEKVVKVTSVVATAVVSYFLLTADYGPEPNALDPIRQRILSAQDSVKEF 53

BLAST of Cucsa.258310 vs. NCBI nr
Match: gi|659075274|ref|XP_008438057.1| (PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 1

Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVSPLSISPSKSL 52
          MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPV  + +S   S+
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSI 51

BLAST of Cucsa.258310 vs. NCBI nr
Match: gi|778677234|ref|XP_011650756.1| (PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-14
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 1

Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVSPLSISPSKSL 52
          MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPV  + +S   S+
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSI 51

BLAST of Cucsa.258310 vs. NCBI nr
Match: gi|590722193|ref|XP_007051828.1| (UvrABC system protein A [Theobroma cacao])

HSP 1 Score: 75.1 bits (183), Expect = 6.1e-11
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 1

Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVSPLSISPSKSLIVF 55
          M+N R DKL+RRTTMVAT TASYFLLTADYGP+PN LDP+    +S   SL  F
Sbjct: 1  MMNPRADKLVRRTTMVATATASYFLLTADYGPEPNVLDPIKKAILSAQSSLKEF 54

BLAST of Cucsa.258310 vs. NCBI nr
Match: gi|629113100|gb|KCW78060.1| (hypothetical protein EUGRSUZ_D02283 [Eucalyptus grandis])

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-10
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1

Query: 1   MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVSPLSIS 47
           M+N RTDKL+RRTTMVAT+TA+YFLLTADYGP+PN LDP+    +S
Sbjct: 73  MMNPRTDKLVRRTTMVATITAAYFLLTADYGPEPNALDPIKKAILS 118

BLAST of Cucsa.258310 vs. NCBI nr
Match: gi|747090872|ref|XP_011093145.1| (PREDICTED: uncharacterized protein LOC105173173 [Sesamum indicum])

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-10
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1

Query: 2  VNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVSPLSISPSKSLIVF 55
          ++ RTDKL+RRTTMVATVTASYFLLTADYG +PNFLDP+    +S  +S+  F
Sbjct: 1  MDPRTDKLVRRTTMVATVTASYFLLTADYGTEPNFLDPIKNAILSAQRSVKEF 53

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L7H0_CUCSA1.1e-1482.35Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122460 PE=4 SV=1[more]
A0A061DTB9_THECC4.3e-1166.67UvrABC system protein A OS=Theobroma cacao GN=TCM_005347 PE=4 SV=1[more]
A0A059CJG1_EUCGR1.2e-1071.74Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02283 PE=4 SV=1[more]
A0A118JXN4_CYNCS2.1e-1058.73Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_000663 PE=4 ... [more]
A0A0B0NQ75_GOSAR1.1e-0964.15Adenylosuccinate synthetase OS=Gossypium arboreum GN=F383_10320 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G00530.11.7e-1156.60 unknown protein[more]
AT1G01725.12.3e-0847.17 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659075274|ref|XP_008438057.1|1.2e-1482.35PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo][more]
gi|778677234|ref|XP_011650756.1|1.6e-1482.35PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus][more]
gi|590722193|ref|XP_007051828.1|6.1e-1166.67UvrABC system protein A [Theobroma cacao][more]
gi|629113100|gb|KCW78060.1|1.8e-1071.74hypothetical protein EUGRSUZ_D02283 [Eucalyptus grandis][more]
gi|747090872|ref|XP_011093145.1|1.8e-1066.04PREDICTED: uncharacterized protein LOC105173173 [Sesamum indicum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.258310.1Cucsa.258310.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37696FAMILY NOT NAMEDcoord: 1..40
score: 1.4

The following gene(s) are paralogous to this gene:

None