CSPI03G08840 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G08840
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	UvrABC system protein A
Location	Chr3 : 7332758 .. 7335039 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATATTAATTTTGAGAGTCAATTTTTCTATTTTTTAAAAAACAAAAAGAAAAAATAATGTATAAAAGGGTTTTAAGCGGTTAAAGGGAATCGCGATTTCTTCTCCGTTCGAGCAATTGATTCGAAATTGAGAGGTCGAATTGATACAAAAAATGGTGAATCAGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTTCTCGATCCTGTGAGTCCTCTATCCATCTCTCCCTCAAAATCTTTAATTGTCTGTTTGGTCGCCGGGAAAATCCATGCAAAAAACCACTAGGATCCTGGATTTTTAGTACGCCGGTTTCTTCTTACTATTCAGCAACCTAGGGATTGTTTATTGTGCAAATGTAACGCGGATTTGTTTGTAGAGTTTATTTGTCTTATCCGTATTCTCTTCAAGTGGAAATTAAATTGCGTTTGCAAGGGTTTGGATTTCTAATTGGTTATTCTTTTTATACGTGTCGTGTAGTCTAGTTCAAGCTTTGTGGTTCTTGGATTTCTAGTCGTATTTTTTATTCAGTTATTGTTCGTAATTTTTGTTGACTGTGTAGAATTTGTTGTTTATTATGCCTAGTACTTGATTTTAGTGTGGAAAACCTATGTTTTTTTTTTTTTTTCTAAATTCTTCGTCGGTCCTGTTTTCCTCGCTAAATTGACAGATGTTTAACACGATCCGTGTTTAGTTTATGATAAGCTCATCTAACGTGTTGTAAAATTGTTGAGGCTTTAACTCTACATTACATTGAGCTTAATTAAATGAAAATTTTTACTTCCAGTACATTCTCAAATTGATAAAAAAGAAGATATATTACTTCATGTGATGATTCTGATCCATAATAAGAACAATCTGTAGTTTGTGGTTTCATGAATTGCTAATTATCATTCGTTATAGTGTTTATTTTTTTGAAAAAGAGACAAACTTCTTTATTAATGATAAAATCTCAAAGTACAAAAGGTATATACATTAAGAATAATAAAGAAGCCTAAAAGCAAAAAGGTAGGGGATGAGAAGGTGCACTCGGGCATCTCACATTTGTTATAGTGTTTAATTTTTTAATATCACTTCCAATGAAGTTTATGTCTTGCTAGAATTGTCTCTTAATGATGATTTCTTGCTATTGCAGTAAGATATGAGAACTAAGAGTAAAGATTGAAGTTTCCCTTTCTATTACACTCAGAAGCTAGAAGACTTAGCATTTAACTAATTAAAATTATAAGTTGAATTGAGAAGTCATTGTGGTTCTGCTTCTACTTGTAATAAACATCTGGAAAGCAGTGGATATTTCAGTTATTTACTTGTTACAACACAGGAAAATCTTATGCTGTGATGAATCCTTGTGCATAAAAACACCACTTTCTTTGTCTTGTGGTCTAGAGACTTTTAGATTGTTTTCAAAATCAAAGTCCTTTCCATAACCTTGTTTGAAATTGGCTGAGAATTCACATGTTCATATAGGAATTATGAAAATCCTGAAGCAAGGAGTTGCTAGAAAACAAGCACAGTTGTCAAAAACTAAAAACCGAATGGTTACTAAACGGGTCCATATTGATCTATTGGTTTTTTATATGCTTGATTGGTGTTTGATCAAATTTCCAGATGCTTAGAAGATTGTAGTTTTGAATTCTAATGGCCTAATCTGGGAATGGCAGGTCAAAAAGGTTATACTGTCAGCAGAAAGTTCTATAAAGGGATTCATCTTTGGATCAAATAATCAATCTCAAGAAGGTCAAAGAGAGAAGCTCGGCTCCAATGGCGTCAAGGACAATGCATGATAAGTAAACTTCAAAGACTTAGTTACGAATTTATGTATATATGTCTTGAATCTGCAGTTTGTTATTATACATTTCCTAAAGCTTAGGTTGAGATCATGCGTGAGTAAACCTTTTGGAGGAGTAAAATAATAATGCAGTTTGTTTAGACTTTAAGATGTTTAATGAATTGGTTTATGACCAAACCCATTTAGCATATTAACCTCATAGATTCAAATTAGTTATAGCATATTCCTGGATTGGTGTAGGGTTCTCCACATCAGTACCCCTTTACAAATAAGGTCGAATCTATCCACATTAACGTGGGATTCATTAATGTTCATGAAATACCTTTATAATGAGAACAAAGAGGGTATAGTAACTCCGTAGTACTAGAAAATTTTCATCTTCAAACCTATGAAGTATTGAGAGACCCTTACATTTTTGTTTAATCTCAT

mRNA sequence

ATGGTGAATCAGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTTCTCGATCCTGTCAAAAAGGTTATACTGTCAGCAGAAAGTTCTATAAAGGGATTCATCTTTGGATCAAATAATCAATCTCAAGAAGGTCAAAGAGAGAAGCTCGGCTCCAATGGCGTCAAGGACAATGCATGA

Coding sequence (CDS)

ATGGTGAATCAGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTTCTCGATCCTGTCAAAAAGGTTATACTGTCAGCAGAAAGTTCTATAAAGGGATTCATCTTTGGATCAAATAATCAATCTCAAGAAGGTCAAAGAGAGAAGCTCGGCTCCAATGGCGTCAAGGACAATGCATGA

Homology

[Close]

BLAST of CSPI03G08840 vs. TrEMBL
Match: A0A0A0L7H0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122460 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.3e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVKDNA 80
          QSQEGQREKLGSNGVKDNA
Sbjct: 61 QSQEGQREKLGSNGVKDNA 79

[Close]

BLAST of CSPI03G08840 vs. TrEMBL
Match: A0A059CJG1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02283 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 47/66 (71.21%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 1   MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
           M+N RTDKL+RRTTMVAT+TA+YFLLTADYGP+PN LDP+KK ILSAE+ +KGF+FGS+ 
Sbjct: 73  MMNPRTDKLVRRTTMVATITAAYFLLTADYGPEPNALDPIKKAILSAENRVKGFVFGSSE 132

Query: 61  QSQEGQ 67
           + +E Q
Sbjct: 133 KPRESQ 138

[Close]

BLAST of CSPI03G08840 vs. TrEMBL
Match: A0A0S3SYV2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G152600 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-19
Identity = 51/73 (69.86%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          ++N RT+KL+RR T+VATVTASYFLLTADYGPQPN LDP+KK ILSA+S +KG+I GS  
Sbjct: 3  LMNPRTEKLVRRLTIVATVTASYFLLTADYGPQPNALDPIKKQILSAQSMVKGYILGSKI 62

Query: 61 QSQEGQREKLGSN 74
          +SQE Q  KL SN
Sbjct: 63 ESQENQLGKLDSN 75

[Close]

BLAST of CSPI03G08840 vs. TrEMBL
Match: A0A151UCK2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_021322 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-19
Identity = 49/73 (67.12%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          ++N RT+KL+RR T+V TV ASYFLLTADYGPQPN LDP+KK ILSAES++K ++FGS  
Sbjct: 3  LMNPRTEKLVRRLTIVTTVAASYFLLTADYGPQPNALDPIKKQILSAESTVKEYVFGSKK 62

Query: 61 QSQEGQREKLGSN 74
          +SQE Q  KL SN
Sbjct: 63 ESQENQTGKLDSN 75

[Close]

BLAST of CSPI03G08840 vs. TrEMBL
Match: A0A067H2P8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034916mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-18
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 2  VNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNNQ 61
          +N +TDK++RRTTMVAT  ASYFLLTADYGP+PN LDP+KK ILSAESS+K FIFGS  +
Sbjct: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60

Query: 62 -SQEGQREKLGSNGVKDN 79
            +E Q  KL S+  K++
Sbjct: 61 PREESQTAKLSSDNSKEH 78

[Close]

BLAST of CSPI03G08840 vs. TAIR10
Match: AT4G00530.1 (AT4G00530.1 unknown protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-17
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1


Query: 2  VNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNNQ 61
          +N +TDK++RRTTMVAT  ASYFLLT DYGP+PN LDP+K+ IL+A+ S+K FIFG   +
Sbjct: 1  MNPQTDKVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIKRKILAAQDSVKQFIFGPKGE 60

[Close]

BLAST of CSPI03G08840 vs. TAIR10
Match: AT1G01725.1 (AT1G01725.1 unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 4.1e-13
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 2  VNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNNQ 61
          +N + +K+++ T++VAT   SYFLLTADYGP+PN LDP+++ ILSA+ S+K FIF S   
Sbjct: 1  MNPQIEKVVKVTSVVATAVVSYFLLTADYGPEPNALDPIRQRILSAQDSVKEFIFPSKKS 60

Query: 62 SQ 64
           +
Sbjct: 61 DK 62

[Close]

BLAST of CSPI03G08840 vs. NCBI nr
Match: gi|778677234|ref|XP_011650756.1| (PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 4.7e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVKDNA 80
          QSQEGQREKLGSNGVKDNA
Sbjct: 61 QSQEGQREKLGSNGVKDNA 79

[Close]

BLAST of CSPI03G08840 vs. NCBI nr
Match: gi|659075274|ref|XP_008438057.1| (PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 6.2e-35
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKK+ILSAESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVKDNA 80
          QSQEGQREKLGSNGVKDNA
Sbjct: 61 QSQEGQREKLGSNGVKDNA 79

[Close]

BLAST of CSPI03G08840 vs. NCBI nr
Match: gi|1009172618|ref|XP_015867370.1| (PREDICTED: uncharacterized protein LOC107404888 [Ziziphus jujuba])

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-23
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          M+  +TDKL+RRT MVATVTASYFL+TADYGPQPN LDP+KK ILSAESS+K FIFGSNN
Sbjct: 1  MLKPQTDKLVRRTAMVATVTASYFLITADYGPQPNALDPIKKAILSAESSVKEFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVK 77
          QS+E + EKLGS   K
Sbjct: 61 QSEESEIEKLGSESAK 76

[Close]

BLAST of CSPI03G08840 vs. NCBI nr
Match: gi|802695462|ref|XP_012083410.1| (PREDICTED: uncharacterized protein LOC105642997 [Jatropha curcas])

HSP 1 Score: 105.5 bits (262), Expect = 4.3e-20
Identity = 48/78 (61.54%), Postives = 63/78 (80.77%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          ++N +TDK++RRTTM+ TV ASYFLLTADYGP+PN  DP+KK +LSAESS+K +IFGS  
Sbjct: 3  VMNPKTDKIVRRTTMIGTVVASYFLLTADYGPEPNVFDPIKKALLSAESSVKEYIFGSKK 62

Query: 61 QSQEGQREKLGSNGVKDN 79
          + + GQ EKL SN  K++
Sbjct: 63 EPEGGQMEKLSSNSAKEH 80

[Close]

BLAST of CSPI03G08840 vs. NCBI nr
Match: gi|629113100|gb|KCW78060.1| (hypothetical protein EUGRSUZ_D02283 [Eucalyptus grandis])

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-19
Identity = 47/66 (71.21%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 1   MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
           M+N RTDKL+RRTTMVAT+TA+YFLLTADYGP+PN LDP+KK ILSAE+ +KGF+FGS+ 
Sbjct: 73  MMNPRTDKLVRRTTMVATITAAYFLLTADYGPEPNALDPIKKAILSAENRVKGFVFGSSE 132

Query: 61  QSQEGQ 67
           + +E Q
Sbjct: 133 KPRESQ 138

The following BLAST results are available for this feature:

BLAST of CSPI03G08840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G08840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7H0_CUCSA	3.3e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122460 PE=4 SV=1	[more]
A0A059CJG1_EUCGR	1.5e-19	71.21	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02283 PE=4 SV=1	[more]
A0A0S3SYV2_PHAAN	1.9e-19	69.86	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G152600 PE=...	[more]
A0A151UCK2_CAJCA	4.3e-19	67.12	Uncharacterized protein OS=Cajanus cajan GN=KK1_021322 PE=4 SV=1	[more]
A0A067H2P8_CITSI	2.8e-18	64.10	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034916mg PE=4 SV=1	[more]

BLAST of CSPI03G08840 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00530.1	2.1e-17	63.33	unknown protein	[more]
AT1G01725.1	4.1e-13	51.61	unknown protein	[more]

BLAST of CSPI03G08840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778677234\|ref\|XP_011650756.1\|	4.7e-35	100.00	PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus]	[more]
gi\|659075274\|ref\|XP_008438057.1\|	6.2e-35	98.73	PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo]	[more]
gi\|1009172618\|ref\|XP_015867370.1\|	2.4e-23	75.00	PREDICTED: uncharacterized protein LOC107404888 [Ziziphus jujuba]	[more]
gi\|802695462\|ref\|XP_012083410.1\|	4.3e-20	61.54	PREDICTED: uncharacterized protein LOC105642997 [Jatropha curcas]	[more]
gi\|629113100\|gb\|KCW78060.1\|	2.1e-19	71.21	hypothetical protein EUGRSUZ_D02283 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G08840.1	CSPI03G08840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37696	FAMILY NOT NAMED	coord: 1..73 score: 4.8
None	No IPR available	PANTHER	PTHR37696:SF1	SUBFAMILY NOT NAMED	coord: 1..73 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G08840	Csa3G122460	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G08840	MELO3C006116	Melon (DHL92) v3.5.1	cpimeB230
CSPI03G08840	ClCG05G001590	Watermelon (Charleston Gray)	cpiwcgB226
CSPI03G08840	Lsi05G020330	Bottle gourd (USVL1VR-Ls)	cpilsiB207
CSPI03G08840	MELO3C006116.2	Melon (DHL92) v3.6.1	cpimedB224
CSPI03G08840	CsaV3_3G008980	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G08840	Cla97C05G081980	Watermelon (97103) v2	cpiwmbB209
CSPI03G08840	Bhi01G000261	Wax gourd	cpiwgoB272
CSPI03G08840	Cucsa.258310	Cucumber (Gy14) v1	cgycpiB383
CSPI03G08840	CmaCh14G020320	Cucurbita maxima (Rimu)	cmacpiB255
CSPI03G08840	CsGy3G008920	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G08840	Carg21007	Silver-seed gourd	carcpiB0529

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G08840	Silver-seed gourd	carcpiB0417
CSPI03G08840	Wild cucumber (PI 183967)	cpicpiB105
CSPI03G08840	Cucumber (Gy14) v1	cgycpiB454
CSPI03G08840	Cucurbita maxima (Rimu)	cmacpiB611
CSPI03G08840	Cucurbita maxima (Rimu)	cmacpiB826
CSPI03G08840	Cucurbita maxima (Rimu)	cmacpiB841
CSPI03G08840	Cucurbita moschata (Rifu)	cmocpiB243
CSPI03G08840	Cucurbita moschata (Rifu)	cmocpiB814
CSPI03G08840	Cucurbita moschata (Rifu)	cmocpiB826
CSPI03G08840	Melon (DHL92) v3.5.1	cpimeB249
CSPI03G08840	Watermelon (Charleston Gray)	cpiwcgB246
CSPI03G08840	Watermelon (97103) v1	cpiwmB231
CSPI03G08840	Watermelon (97103) v1	cpiwmB251
CSPI03G08840	Cucurbita pepo (Zucchini)	cpecpiB611
CSPI03G08840	Cucurbita pepo (Zucchini)	cpecpiB854
CSPI03G08840	Melon (DHL92) v3.6.1	cpimedB246