Carg21007 (gene) Silver-seed gourd

NameCarg21007
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUvrABC system protein A
LocationCucurbita_argyrosperma_scaffold_170 : 308339 .. 310612 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCTCCGTCGAAATGGTGAATCCGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCCTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCCAATTTTCTCGATCCTGTGAGTTCTCTAGGCATCTCTCCCTCAAATTTTTTATTATCTGTCTGGTTCGAAAAAGTAGGATCTTGGATCTTATGTAGGTTAGTTTCTTTTTACTATTCAGCAACCCAGGGATTGTTATCGTGCCATTGACGCGGATTTGTTGGTGTTCTTTTGTCTGTCTTTTTCTGATGTGATTTCTGTTTGTCTATTATGGATTCTGTTATCTAGACATTGATGAACTTCCTCTTCTCTGTATTCTTTTCAAGCGAAAAATGAATTGCTTTTGCAGTGACTTCGTTTCTTAATCAATTTTTCTTTTTATGCAACTCGTATAGTGTAGTTCAAGCTCTTAGATTTCCAATCATATTTTACTCGCTTATTGTTCTTAATTTTTGTTGCCAGTGTATTTGTTGTCGTATATTTCGCCTTGTACTTGATTTGACGTGTAGAACCTAGGTTTTCTACATTCTTCGTCGGTCTTGTTTTCCTTGCTAAATTTACCATTGTTTAACACGATTTATGTTTAGTTTATGAAATTTTCATCCTTTGTGTTATAAATTTGTTGAGGCTTTAACATTTCAATACACTGAGTTTAAATTAGATGGAAAATTTCCTTCCAATACGTTGTCAAATTGCTGAGAGTGCACATATACGTTCATCTGATCTCTTACAACAATCTGAAGTTTGTAGGTTTATGAGTTGCTAATTACCCTTTGTTCTTGTTTTTGAGTCATCACTTTCAATGAAATTTATACCTTGCTAGATTTATCTGTCGCTCATAATTTCTTGATATTGAAGTGAGACATGAGAACTAAGAGTAAAGAGTGAAGTTTCCCTTTCTATTCAGTTAGAAGCAAGAAGACTTGGTATTTAGCAAATTAATAACACAAGTTTAGGTGACAATTAACATGGTTTTACTTCTACATATGGTTTGGAATCATGACTCTTCACAATGGTATGATATTATCCACTTTGAGCATAAGCTCTCGTGGCTTTGCTTTGGGCTTCCCCAAAAGGTCTCATACCAATGGAGAGAGACTCACTACCAATAATTCTCAACAATCCTCCCCTCAAACAAAGTACACTATAAGCCTCCCCTGAGGCTTATGGAGCTCTCGAATAGTCTCCCCTTAATCGAGACTCGACTCCTTTCTCTGGAGCCCTCAAACAAAGTACACCCTTTGTTTGACACTTTAGTCACTTTTGACTACACCTTCGAGGCTCACAATTCTTTGTTCGATATTTGAGGATTCTTTTGACATAGTTAAGTTTAGGGCATGACTCTGATACCATGTTTGGAATCACGAGTCTCCAGAATGGTATGATATTGTCCACTTTGAGAATAAGTTCTCGTGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGAGGGACTCACTCCCAATAATCCTCAACACATATAGTTAACAACTGGACGGCACTAGACATTTTAGTTATTTGCCATAATCATATCTTATTGATCTACCGGTTTTTATATGCTTGATTGGTGTTCGATCGAATTTTCAGATGTCTAGAAGATTGTCCATATTGTTCTGAGTTCTAATGGCCTAATTTGGAATGGCAGATCAAAAAGTTTATACTGTCAACAGAAAGTTCTATTAAGGGTTTCATCTTTGGATCAAATAATCAATCTCAAGGAAGTCAAAGTGAGAAGCTTGGCTCCAATGGTGTCAAGGACAATCCATGATGCGTAGACTCGAGGATTTGGTTACGGTTTTATGCATACATATCTTGAATCTGCAGTTTTTGTTTATACATTTCGTGAAGCGTAGGTCGAGATCAAGCATGAGTATACCTCTTGGAGGAGACGAATAATGCAGTTTGTTAGATTCAAAGGTGTCGAATGAATTTGTTATTACCAACTTCATTTAGCATCTTAACCTCAAGAGATTCGAAGTACTTCGCATATTTTGGGATTGCTATGATATCACATCAAGTGGTTCTGAACTCCGGTAGAAAAAATGAACATTGCTCTGATTTAGGAACTTTAGAAGTGAAATGTGTGAGTCAGCCCAAGACCCCCACGGGAACGTGTTTTAAAACCGTGAGACTGACGGTGATACGTAACGAGTCAAAATGGACAATATTTGTTAACGTTGGGTTTGAGCTATTACAATTTTCCTATTCTATAC

mRNA sequence

TCTTCTCCGTCGAAATGGTGAATCCGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCCTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCCAATTTTCTCGATCCTATCAAAAAGTTTATACTGTCAACAGAAAGTTCTATTAAGGGTTTCATCTTTGGATCAAATAATCAATCTCAAGGAAGTCAAAGTGAGAAGCTTGGCTCCAATGGTGTCAAGGACAATCCATGATGCGTAGACTCGAGGATTTGGTTACGGTTTTATGCATACATATCTTGAATCTGCAGTTTTTGTTTATACATTTCGTGAAGCGTAGGTCGAGATCAAGCATGAGTATACCTCTTGGAGGAGACGAATAATGCAGTTTGTTAGATTCAAAGGTGTCGAATGAATTTGTTATTACCAACTTCATTTAGCATCTTAACCTCAAGAGATTCGAAGTACTTCGCATATTTTGGGATTGCTATGATATCACATCAAGTGGTTCTGAACTCCGGTAGAAAAAATGAACATTGCTCTGATTTAGGAACTTTAGAAGTGAAATGTGTGAGTCAGCCCAAGACCCCCACGGGAACGTGTTTTAAAACCGTGAGACTGACGGTGATACGTAACGAGTCAAAATGGACAATATTTGTTAACGTTGGGTTTGAGCTATTACAATTTTCCTATTCTATAC

Coding sequence (CDS)

ATGGTGAATCCGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCCTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCCAATTTTCTCGATCCTATCAAAAAGTTTATACTGTCAACAGAAAGTTCTATTAAGGGTTTCATCTTTGGATCAAATAATCAATCTCAAGGAAGTCAAAGTGAGAAGCTTGGCTCCAATGGTGTCAAGGACAATCCATGA

Protein sequence

MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNNQSQGSQSEKLGSNGVKDNP
BLAST of Carg21007 vs. NCBI nr
Match: XP_022924545.1 (uncharacterized protein LOC111431996 [Cucurbita moschata] >XP_022980455.1 uncharacterized protein LOC111479819 [Cucurbita maxima] >XP_023529151.1 uncharacterized protein LOC111791881 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.6 bits (392), Expect = 7.0e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60

Query: 61 QSQGSQSEKLGSNGVKDNP 80
          QSQGSQSEKLGSNGVKDNP
Sbjct: 61 QSQGSQSEKLGSNGVKDNP 79

BLAST of Carg21007 vs. NCBI nr
Match: XP_022147242.1 (uncharacterized protein LOC111016239 [Momordica charantia])

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-31
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPI+KFILS ESS+KGFIFGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIQKFILSAESSVKGFIFGSNN 60

Query: 61 QSQGSQSEKLGSNGVKDNP 80
          QSQ SQ EKLGSNGVKD P
Sbjct: 61 QSQESQREKLGSNGVKDQP 79

BLAST of Carg21007 vs. NCBI nr
Match: XP_008438057.1 (PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 8.8e-30
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 0

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILS ESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQGSQSEKLGSNGVKDN 79
          QSQ  Q EKLGSNGVKDN
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

BLAST of Carg21007 vs. NCBI nr
Match: XP_011650756.1 (PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus] >KGN56522.1 hypothetical protein Csa_3G122460 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 1.1e-29
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 0

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILS ESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQGSQSEKLGSNGVKDN 79
          QSQ  Q EKLGSNGVKDN
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

BLAST of Carg21007 vs. NCBI nr
Match: XP_015867370.1 (uncharacterized protein LOC107404888 [Ziziphus jujuba])

HSP 1 Score: 116.7 bits (291), Expect = 3.6e-23
Identity = 59/79 (74.68%), Postives = 67/79 (84.81%), Query Frame = 0

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          M+ P+TDKL+RRT MVATVTASYFL+TADYGPQPN LDPIKK ILS ESS+K FIFGSNN
Sbjct: 1  MLKPQTDKLVRRTAMVATVTASYFLITADYGPQPNALDPIKKAILSAESSVKEFIFGSNN 60

Query: 61 QSQGSQSEKLGSNGVKDNP 80
          QS+ S+ EKLGS   K +P
Sbjct: 61 QSEESEIEKLGSESAKKHP 79

BLAST of Carg21007 vs. TAIR10
Match: AT4G00530.1 (unknown protein)

HSP 1 Score: 87.8 bits (216), Expect = 3.2e-18
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNNQ 61
          +NP+TDK++RRTTMVAT  ASYFLLT DYGP+PN LDPIK+ IL+ + S+K FIFG   +
Sbjct: 1  MNPQTDKVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIKRKILAAQDSVKQFIFGPKGE 60

Query: 62 SQGSQ 67
            G +
Sbjct: 61 PSGKE 65

BLAST of Carg21007 vs. TAIR10
Match: AT1G01725.1 (unknown protein)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-13
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNNQ 61
          +NP+ +K+++ T++VAT   SYFLLTADYGP+PN LDPI++ ILS + S+K FIF S   
Sbjct: 1  MNPQIEKVVKVTSVVATAVVSYFLLTADYGPEPNALDPIRQRILSAQDSVKEFIFPSKKS 60

Query: 62 SQ 64
           +
Sbjct: 61 DK 62

BLAST of Carg21007 vs. TrEMBL
Match: tr|A0A1S3AW35|A0A1S3AW35_CUCME (uncharacterized protein LOC103483279 OS=Cucumis melo OX=3656 GN=LOC103483279 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.8e-30
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 0

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILS ESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQGSQSEKLGSNGVKDN 79
          QSQ  Q EKLGSNGVKDN
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

BLAST of Carg21007 vs. TrEMBL
Match: tr|A0A0A0L7H0|A0A0A0L7H0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122460 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.6e-30
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 0

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILS ESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQGSQSEKLGSNGVKDN 79
          QSQ  Q EKLGSNGVKDN
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

BLAST of Carg21007 vs. TrEMBL
Match: tr|A0A2P5F2N8|A0A2P5F2N8_9ROSA (UvrABC system protein A OS=Trema orientalis OX=63057 GN=TorRG33x02_121350 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.0e-23
Identity = 57/79 (72.15%), Postives = 68/79 (86.08%), Query Frame = 0

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          M+NP+TDKL+RRTTMVAT+TASYFLLTADYGP+PN LDP+KK I S ES++K +IFGS +
Sbjct: 1  MMNPQTDKLVRRTTMVATITASYFLLTADYGPEPNALDPVKKAIQSAESTVKEYIFGSKD 60

Query: 61 QSQGSQSEKLGSNGVKDNP 80
          QSQ SQ EKLGSN  K +P
Sbjct: 61 QSQESQVEKLGSNSPKKHP 79

BLAST of Carg21007 vs. TrEMBL
Match: tr|A0A2P5B2M6|A0A2P5B2M6_PARAD (UvrABC system protein A OS=Parasponia andersonii OX=3476 GN=PanWU01x14_277090 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.8e-22
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 0

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          M+NP+TDKL+RRTTMVAT+TASYFLLTADYGP+PN LDP+KK I S ES++K +IFGS +
Sbjct: 1  MMNPQTDKLVRRTTMVATITASYFLLTADYGPEPNALDPVKKAIRSAESTVKEYIFGSKD 60

Query: 61 QSQGSQSEKLGSNGVKDNP 80
          QSQ SQ  KLGSN  K +P
Sbjct: 61 QSQESQVGKLGSNSPKKHP 79

BLAST of Carg21007 vs. TrEMBL
Match: tr|A0A2G9G3S3|A0A2G9G3S3_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27535 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-19
Identity = 52/78 (66.67%), Postives = 63/78 (80.77%), Query Frame = 0

Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNNQ 61
          ++P+TDKL+RRTTMVATVTASYFLLTADYGP+PNFLDPIK  ILS E S+K FIFG   +
Sbjct: 1  MDPKTDKLVRRTTMVATVTASYFLLTADYGPEPNFLDPIKNAILSAERSVKEFIFGQKKE 60

Query: 62 SQGSQSEKLGSNGVKDNP 80
          +  S+S KL SN  + +P
Sbjct: 61 TPQSESSKLPSNASEKHP 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022924545.17.0e-35100.00uncharacterized protein LOC111431996 [Cucurbita moschata] >XP_022980455.1 unchar... [more]
XP_022147242.11.6e-3192.41uncharacterized protein LOC111016239 [Momordica charantia][more]
XP_008438057.18.8e-3091.03PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo][more]
XP_011650756.11.1e-2991.03PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus] >KGN56522.1 hy... [more]
XP_015867370.13.6e-2374.68uncharacterized protein LOC107404888 [Ziziphus jujuba][more]
Match NameE-valueIdentityDescription
AT4G00530.13.2e-1861.54unknown protein[more]
AT1G01725.11.4e-1353.23unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3AW35|A0A1S3AW35_CUCME5.8e-3091.03uncharacterized protein LOC103483279 OS=Cucumis melo OX=3656 GN=LOC103483279 PE=... [more]
tr|A0A0A0L7H0|A0A0A0L7H0_CUCSA7.6e-3091.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122460 PE=4 SV=1[more]
tr|A0A2P5F2N8|A0A2P5F2N8_9ROSA9.0e-2372.15UvrABC system protein A OS=Trema orientalis OX=63057 GN=TorRG33x02_121350 PE=4 S... [more]
tr|A0A2P5B2M6|A0A2P5B2M6_PARAD5.8e-2270.89UvrABC system protein A OS=Parasponia andersonii OX=3476 GN=PanWU01x14_277090 PE... [more]
tr|A0A2G9G3S3|A0A2G9G3S3_9LAMI1.2e-1966.67Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27535 P... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21007-RACarg21007-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..79
NoneNo IPR availablePANTHERPTHR37696FAMILY NOT NAMEDcoord: 2..70