CsaV3_3G008980 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G008980
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUvrABC system protein A
Locationchr3 : 7463290 .. 7465609 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAATTTTGAGAGTCAATTTTTCTATTTTTTAAAAAACAAAAAGAAAAAAAAATGTATAAAAGGGTTTTAAGCGGTTAAAGGGAATCGCGATTTCTTCTCCGTTCGAGCAATTGATTCGAAATTGAGAGGTCGAATTGATACAAAAAATGGTGAATCAGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTTCTCGATCCTGTGAGTCCTCTATCCATCTCTCCCTCAAAATCTTTAATTGTCTGTTTGGTCGCCGGGAAAATCCATGCAAAAAACCACTAGGATCCTGGATTTTTAGTACGCCGGTTTCTTCTTACTATTCAGCAACCTAGGGATTGTTTATTGTGCAAATGTAACGCGGATTTGTTTGTAGAGTTTATTTGTCTTATCCGTATTCTCTTCAAGTGGAAATTAAATTGCGTTTGCAAGGGTTTGGATTTCTAATTGGTTATTCTTTTTATACGTGTCGTGTAGTCTAGTTCAAGCTTTGTGGTTCTTGGATTTCTAGTCGTATTTTTTATTCAGTTATTGTTCGTAATTTTTGTTGACTGTGTAGAATTTGTTGTTTATTATGCCTAGTACTTGATTTTAGTGTGGAAAACCTATGTTTTTTTTTTCTAAATTCTTCGTCGGTCCTGTTTTCCTCGCTAAATTGACAGATGTTTAACACGATCCGTGTTTAGTTTATGATAAGCTCATCTAACGTGTTGTAAAATTGTTGAGGCTTTAACTCTACATTACATTGAGCTTAATTAAATGAAATTTTTTACTTCCAGTTCATTCTCAAATTGATAAAAAAAAAGATATATTACTTCATGTGATGATTCTGATCCATAATAAGAACAATCTGTAGTTTGTGGTTTCATGAATTGCTAATTATCATTCGTTGTAGTGTTTATTTTTTTGAAAAAGAGACAAACTTCTTTATTAATGATAAAATCTCAAAGTACAAAAGGTATATATATTAAGAATAATAAAGAAGCCTAAAAGCAAAAAGGTAGGGGATGAGAAGGTGCACTCGGGCATCTCACATTTGTTATAGTGTTCAATTTTTTAATATCACTTCCAATGAAGTTTATGTCTTGCTAGAATTGTCTCTTAATGATGATTTCTTGCTATTGCAGTAAGATATGAGAACTAAGAGTAAAGATTGAAGTTTCCCTTTCTGTTACACTCAGAAGCTAGAAGACTTAGCATTTAACTAATTAAAATTATAAGTTGAATTGAGAAGTCATTGTGGTTCTGCTTCTACTTGTAATAAACATCTGGAAAGCAGTGGATATTTCAGTTATTTACTTGTTACAACACAGGAAAATCTTATGCTGTGATGAATCCTTGTGCATAAAAACACCACTTTCTTTGTCTTGTGGTCTAGAGACTTTTAGATTGTTTTCAAAATCAAAGTCCTTTCCATAACCTTGTTTGAAATTGGCTGAGAACTCACATGTTCATATAGGAATTATGAAAATCCTGAAGCAAGGAGTTGCTAGAAAACAAGCACAGTTATCAAAAACTAAAAACCGAATGGTTACTAAACGGGTCCATATTGATCTATTGGTTTTTTATATGCTTGATTGGTGTTTGATCAAATTTCCAGATGCTTAGAAGATTGTAGTTTTGAATTCTAATGGCCTAATCTGGGAATGGCAGGTCAAAAAGGTTATACTGTCAGCAGAAAGTTCTATAAAGGGATTCATCTTTGGATCAAATAATCAATCTCAAGAAGGTCAAAGAGAGAAGCTCGGCTCCAATGGCGTCAAGGACAATGCATGATAAGTAAACTTCAAAGACTTAGTTACGAATTTATGTATATATGTCTTGAATCTGCAGTTTGTTATTATACATTTCCTAAAGCTTAGGTTGAGATCATGCGTGAGTAAACCTTTTGGAGGAGTAAAATAATAATGCAGTTTGTTTAGACTTTAAGATGTTTAATGAATTGGTTTATGACCAAACCCATTTAGCATATTAACCTCATAGATTCAAATTAGTTATAGCATATTCCTGGATTGGTGTAGGGTTCTCCACATCAGTACCCCTTTACAAATAAGGTCGAATCTATCGACATTAACGTGGGATTCATTAATATTCATGAAATACCTTTATAATGAGAACAAAGAGGGTATAGTAACTCCGTAGTACTAGAAAATTTTCATCTTCAAACCTATGAAGTATTGAGAGACCCTTACATTTTTGTTTAATCTCATAGAAGGAAGTGATATTTGTTTAATTGCTAATCTTATATGCTCATGGATC

mRNA sequence

ATGGTGAATCAGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTTCTCGATCCTGTCAAAAAGGTTATACTGTCAGCAGAAAGTTCTATAAAGGGATTCATCTTTGGATCAAATAATCAATCTCAAGAAGGTCAAAGAGAGAAGCTCGGCTCCAATGGCGTCAAGGACAATGCATGA

Coding sequence (CDS)

ATGGTGAATCAGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTTCTCGATCCTGTCAAAAAGGTTATACTGTCAGCAGAAAGTTCTATAAAGGGATTCATCTTTGGATCAAATAATCAATCTCAAGAAGGTCAAAGAGAGAAGCTCGGCTCCAATGGCGTCAAGGACAATGCATGA

Protein sequence

MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNNQSQEGQREKLGSNGVKDNA
Homology
[Close]
BLAST of CsaV3_3G008980 vs. NCBI nr
Match: XP_011650756.1 (PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus] >KGN56522.1 hypothetical protein Csa_3G122460 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 9.2e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVKDNA 80
          QSQEGQREKLGSNGVKDNA
Sbjct: 61 QSQEGQREKLGSNGVKDNA 79

[Close]
BLAST of CsaV3_3G008980 vs. NCBI nr
Match: XP_008438057.1 (PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-34
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKK+ILSAESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVKDNA 80
          QSQEGQREKLGSNGVKDNA
Sbjct: 61 QSQEGQREKLGSNGVKDNA 79

[Close]
BLAST of CsaV3_3G008980 vs. NCBI nr
Match: XP_022147242.1 (uncharacterized protein LOC111016239 [Momordica charantia])

HSP 1 Score: 142.9 bits (359), Expect = 4.7e-31
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP++K ILSAESS+KGFIFGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIQKFILSAESSVKGFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVKD 78
          QSQE QREKLGSNGVKD
Sbjct: 61 QSQESQREKLGSNGVKD 77

[Close]
BLAST of CsaV3_3G008980 vs. NCBI nr
Match: XP_022924545.1 (uncharacterized protein LOC111431996 [Cucurbita moschata] >XP_022980455.1 uncharacterized protein LOC111479819 [Cucurbita maxima] >XP_023529151.1 uncharacterized protein LOC111791881 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.2 bits (352), Expect = 3.1e-30
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 0 

Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILS ESSIKGFIFGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVKDN 79
          QSQ  Q EKLGSNGVKDN
Sbjct: 61 QSQGSQSEKLGSNGVKDN 78

[Close]
BLAST of CsaV3_3G008980 vs. NCBI nr
Match: XP_015867370.1 (uncharacterized protein LOC107404888 [Ziziphus jujuba])

HSP 1 Score: 116.3 bits (290), Expect = 4.7e-23
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 0 

Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          M+  +TDKL+RRT MVATVTASYFL+TADYGPQPN LDP+KK ILSAESS+K FIFGSNN
Sbjct: 1  MLKPQTDKLVRRTAMVATVTASYFLITADYGPQPNALDPIKKAILSAESSVKEFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVK 77
          QS+E + EKLGS   K
Sbjct: 61 QSEESEIEKLGSESAK 76

[Close]
BLAST of CsaV3_3G008980 vs. TAIR10
Match: AT4G00530.1 (unknown protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-17
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 2  VNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNNQ 61
          +N +TDK++RRTTMVAT  ASYFLLT DYGP+PN LDP+K+ IL+A+ S+K FIFG   +
Sbjct: 1  MNPQTDKVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIKRKILAAQDSVKQFIFGPKGE 60

[Close]
BLAST of CsaV3_3G008980 vs. TAIR10
Match: AT1G01725.1 (unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 4.1e-13
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 2  VNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNNQ 61
          +N + +K+++ T++VAT   SYFLLTADYGP+PN LDP+++ ILSA+ S+K FIF S   
Sbjct: 1  MNPQIEKVVKVTSVVATAVVSYFLLTADYGPEPNALDPIRQRILSAQDSVKEFIFPSKKS 60

Query: 62 SQ 64
           +
Sbjct: 61 DK 62

[Close]
BLAST of CsaV3_3G008980 vs. TrEMBL
Match: tr|A0A0A0L7H0|A0A0A0L7H0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122460 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.1e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVKDNA 80
          QSQEGQREKLGSNGVKDNA
Sbjct: 61 QSQEGQREKLGSNGVKDNA 79

[Close]
BLAST of CsaV3_3G008980 vs. TrEMBL
Match: tr|A0A1S3AW35|A0A1S3AW35_CUCME (uncharacterized protein LOC103483279 OS=Cucumis melo OX=3656 GN=LOC103483279 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 7.9e-35
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKK+ILSAESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVKDNA 80
          QSQEGQREKLGSNGVKDNA
Sbjct: 61 QSQEGQREKLGSNGVKDNA 79

[Close]
BLAST of CsaV3_3G008980 vs. TrEMBL
Match: tr|A0A2P5F2N8|A0A2P5F2N8_9ROSA (UvrABC system protein A OS=Trema orientalis OX=63057 GN=TorRG33x02_121350 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.0e-23
Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 0 

Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          M+N +TDKL+RRTTMVAT+TASYFLLTADYGP+PN LDPVKK I SAES++K +IFGS +
Sbjct: 1  MMNPQTDKLVRRTTMVATITASYFLLTADYGPEPNALDPVKKAIQSAESTVKEYIFGSKD 60

Query: 61 QSQEGQREKLGSNGVK 77
          QSQE Q EKLGSN  K
Sbjct: 61 QSQESQVEKLGSNSPK 76

[Close]
BLAST of CsaV3_3G008980 vs. TrEMBL
Match: tr|A0A2P5B2M6|A0A2P5B2M6_PARAD (UvrABC system protein A OS=Parasponia andersonii OX=3476 GN=PanWU01x14_277090 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.5e-22
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 0 

Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          M+N +TDKL+RRTTMVAT+TASYFLLTADYGP+PN LDPVKK I SAES++K +IFGS +
Sbjct: 1  MMNPQTDKLVRRTTMVATITASYFLLTADYGPEPNALDPVKKAIRSAESTVKEYIFGSKD 60

Query: 61 QSQEGQREKLGSNGVK 77
          QSQE Q  KLGSN  K
Sbjct: 61 QSQESQVGKLGSNSPK 76

[Close]
BLAST of CsaV3_3G008980 vs. TrEMBL
Match: tr|A0A059CJG1|A0A059CJG1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02283 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.7e-19
Identity = 47/66 (71.21%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 1   MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
           M+N RTDKL+RRTTMVAT+TA+YFLLTADYGP+PN LDP+KK ILSAE+ +KGF+FGS+ 
Sbjct: 73  MMNPRTDKLVRRTTMVATITAAYFLLTADYGPEPNALDPIKKAILSAENRVKGFVFGSSE 132

Query: 61  QSQEGQ 67
           + +E Q
Sbjct: 133 KPRESQ 138

The following BLAST results are available for this feature:
BLAST of CsaV3_3G008980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011650756.19.2e-35100.00PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus] >KGN56522.1 hy... [more]
XP_008438057.11.2e-3498.73PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo][more]
XP_022147242.14.7e-3192.21uncharacterized protein LOC111016239 [Momordica charantia][more]
XP_022924545.13.1e-3091.03uncharacterized protein LOC111431996 [Cucurbita moschata] >XP_022980455.1 unchar... [more]
XP_015867370.14.7e-2375.00uncharacterized protein LOC107404888 [Ziziphus jujuba][more]
BLAST of CsaV3_3G008980 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G00530.12.1e-1763.33unknown protein[more]
AT1G01725.14.1e-1351.61unknown protein[more]
BLAST of CsaV3_3G008980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G008980 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7H0|A0A0A0L7H0_CUCSA6.1e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122460 PE=4 SV=1[more]
tr|A0A1S3AW35|A0A1S3AW35_CUCME7.9e-3598.73uncharacterized protein LOC103483279 OS=Cucumis melo OX=3656 GN=LOC103483279 PE=... [more]
tr|A0A2P5F2N8|A0A2P5F2N8_9ROSA7.0e-2375.00UvrABC system protein A OS=Trema orientalis OX=63057 GN=TorRG33x02_121350 PE=4 S... [more]
tr|A0A2P5B2M6|A0A2P5B2M6_PARAD4.5e-2273.68UvrABC system protein A OS=Parasponia andersonii OX=3476 GN=PanWU01x14_277090 PE... [more]
tr|A0A059CJG1|A0A059CJG1_EUCGR2.7e-1971.21Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02283 PE=4 SV... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G008980.1CsaV3_3G008980.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..79
NoneNo IPR availablePANTHERPTHR37696FAMILY NOT NAMEDcoord: 2..70

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G008980CSPI03G08840Wild cucumber (PI 183967)cpicucB144
CsaV3_3G008980Cucsa.258310Cucumber (Gy14) v1cgycucB387
CsaV3_3G008980CmaCh14G020320Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G008980CsGy3G008920Cucumber (Gy14) v2cgybcucB117
CsaV3_3G008980Carg21007Silver-seed gourdcarcucB0528
CsaV3_3G008980MELO3C006116Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G008980ClCG05G001590Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G008980Lsi05G020330Bottle gourd (USVL1VR-Ls)cuclsiB228
CsaV3_3G008980MELO3C006116.2Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G008980Cla97C05G081980Watermelon (97103) v2cucwmbB206
CsaV3_3G008980Bhi01G000261Wax gourdcucwgoB277
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G008980Silver-seed gourdcarcucB0417
CsaV3_3G008980Cucurbita maxima (Rimu)cmacucB0376
CsaV3_3G008980Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G008980Cucurbita maxima (Rimu)cmacucB0979
CsaV3_3G008980Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G008980Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G008980Cucurbita moschata (Rifu)cmocucB0964
CsaV3_3G008980Cucurbita pepo (Zucchini)cpecucB0252
CsaV3_3G008980Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G008980Cucurbita pepo (Zucchini)cpecucB1049
CsaV3_3G008980Melon (DHL92) v3.5.1cucmeB256
CsaV3_3G008980Watermelon (Charleston Gray)cucwcgB245
CsaV3_3G008980Watermelon (97103) v1cucwmB239
CsaV3_3G008980Watermelon (97103) v1cucwmB260