CmaCh14G020320 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G020320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_35
Location	Cma_Chr14 : 14178024 .. 14179345 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATATATAAACCGGAAGCGGTTTATAGCAAACAAGAGGAAACGCGATTTCTTCTCCGTCCAAATGGTGAATCCGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACTGCCGATTATGGCCCTCAACCCAATTTTCTCGATCCTGTGAGTTCTCTAAGCATCTCTCCCTCAAAATTTTTATTATCTGTCTGGTTCGAAGCAGTAGGATCTTGGATCTTATGTAGGTTAGTTTCTTTTTACTATTCAGCAACCCAAGGACGCGGATTTGTTGGTGCTCTTTTGACTGTCTTTTTCTGATGTGATATCTGTTTGTCTATTATGGATTCCGTTATTTAGACATTGATGAACTTCCTCTTATCTGTATTCTTTTCAAGCGAAAAATGAATTGCGTTTGCAGTGATTTCGTTTCTTAATCAATTTTGCTTTTTATGCAACTCGTGTAGTGTAGTTCAAGCTCTTGGATTTCCGATCATATTTTACTCGCTTATTGTTCTTAATTTTTGTTGCCAGTGTATTAGTTGTCGTATATTTCGCCTTGTACTTGATTTAACGTGTAGAACCTAGGGTTTCTACATTCTTCGTCGGTCTTGTTTTCCTTGCTAAATTTACCATTGTTTAACACGATTTATGTTTAGTTTATGAAATTTTCATCCATTGTGTTGTAAATTTGTTGAGGCTTTTAACACTTCACTACACTGAGTTTAAATTAGATGGAAAATTTTCCTTCCATTACGTTGTCAAATTGCTGAGAGAGAACATATACGTTCATCTGATCTCTTACAACAATCTGAAGTTTGTAGGTTTATGAGTTGCTAATTAGCATTTATTCTTGTTTTTGAGTCATCACTTTCAATGAAATTTATACCTTGCTAGATTTGTCTGTCGCTCATAATTTCTTGATATTGAAGTGAGATATGAAAACTAAGAGTGAAGTGTCCCTTTCTATTCAATTAGAAGCAAGAAGACTGGGCATTTAGCAAATTAAGTTTAGGTGACAATTAACATGGTTTTACTTCTACATATAGTTAACAACTGGAAGGCATTAGACATTTCAGTTATTTGCCATAATCATAACTTATTGATTGGTGTTTGATCGAATTTTCAGATGTCTAGAAAATTGTTCATATTGTTCTGAGTTCTAATGGCCTAATTTGGAATGGCAGATCAAAAAGTTTATACTGTCAACAGAAAGTTCTATTAAGGGTTTCATCTTTGGATCAAATAATCAATCTCAAGGAAGTCAAAGTGAGAAGCTTGGCTCCAATGGTGTCAAGGACAATCCATGA

mRNA sequence

CCATATATAAACCGGAAGCGGTTTATAGCAAACAAGAGGAAACGCGATTTCTTCTCCGTCCAAATGGTGAATCCGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACTGCCGATTATGGCCCTCAACCCAATTTTCTCGATCCTATCAAAAAGTTTATACTGTCAACAGAAAGTTCTATTAAGGGTTTCATCTTTGGATCAAATAATCAATCTCAAGGAAGTCAAAGTGAGAAGCTTGGCTCCAATGGTGTCAAGGACAATCCATGA

Coding sequence (CDS)

ATGGTGAATCCGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACTGCCGATTATGGCCCTCAACCCAATTTTCTCGATCCTATCAAAAAGTTTATACTGTCAACAGAAAGTTCTATTAAGGGTTTCATCTTTGGATCAAATAATCAATCTCAAGGAAGTCAAAGTGAGAAGCTTGGCTCCAATGGTGTCAAGGACAATCCATGA

Protein sequence

MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNNQSQGSQSEKLGSNGVKDNP

Homology

[Close]

BLAST of CmaCh14G020320 vs. TrEMBL
Match: A0A0A0L7H0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122460 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.1e-30
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 1


Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILS ESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQGSQSEKLGSNGVKDN 79
          QSQ  Q EKLGSNGVKDN
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

[Close]

BLAST of CmaCh14G020320 vs. TrEMBL
Match: A0A059CJG1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02283 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-19
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 1   MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
           M+NPRTDKL+RRTTMVAT+TA+YFLLTADYGP+PN LDPIKK ILS E+ +KGF+FGS+ 
Sbjct: 73  MMNPRTDKLVRRTTMVATITAAYFLLTADYGPEPNALDPIKKAILSAENRVKGFVFGSSE 132

Query: 61  QSQGSQ 67
           + + SQ
Sbjct: 133 KPRESQ 138

[Close]

BLAST of CmaCh14G020320 vs. TrEMBL
Match: A0A0S3SYV2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G152600 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.6e-19
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          ++NPRT+KL+RR T+VATVTASYFLLTADYGPQPN LDPIKK ILS +S +KG+I GS  
Sbjct: 3  LMNPRTEKLVRRLTIVATVTASYFLLTADYGPQPNALDPIKKQILSAQSMVKGYILGSKI 62

Query: 61 QSQGSQSEKLGSNGVKDNP 80
          +SQ +Q  KL SN  KD P
Sbjct: 63 ESQENQLGKLDSN--KDQP 79

[Close]

BLAST of CmaCh14G020320 vs. TrEMBL
Match: A0A151UCK2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_021322 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.3e-19
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          ++NPRT+KL+RR T+V TV ASYFLLTADYGPQPN LDPIKK ILS ES++K ++FGS  
Sbjct: 3  LMNPRTEKLVRRLTIVTTVAASYFLLTADYGPQPNALDPIKKQILSAESTVKEYVFGSKK 62

Query: 61 QSQGSQSEKLGSNGVKDNP 80
          +SQ +Q+ KL SN  KD P
Sbjct: 63 ESQENQTGKLDSN--KDRP 79

[Close]

BLAST of CmaCh14G020320 vs. TrEMBL
Match: V4U2N6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023145mg PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.3e-19
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNNQ 61
          +NP+TDK++RRTTMVAT  ASYFLLTADYGP+PN LDPIKK ILS ESS+K FIFGS  +
Sbjct: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60

Query: 62 -SQGSQSEKLGSNGVKDNP 80
            + SQ+ KL S+  K++P
Sbjct: 61 PREESQTAKLSSDNSKEHP 79

[Close]

BLAST of CmaCh14G020320 vs. TAIR10
Match: AT4G00530.1 (AT4G00530.1 unknown protein)

HSP 1 Score: 87.8 bits (216), Expect = 3.2e-18
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 1


Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNNQ 61
          +NP+TDK++RRTTMVAT  ASYFLLT DYGP+PN LDPIK+ IL+ + S+K FIFG   +
Sbjct: 1  MNPQTDKVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIKRKILAAQDSVKQFIFGPKGE 60

Query: 62 SQGSQ 67
            G +
Sbjct: 61 PSGKE 65

[Close]

BLAST of CmaCh14G020320 vs. TAIR10
Match: AT1G01725.1 (AT1G01725.1 unknown protein)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-13
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNNQ 61
          +NP+ +K+++ T++VAT   SYFLLTADYGP+PN LDPI++ ILS + S+K FIF S   
Sbjct: 1  MNPQIEKVVKVTSVVATAVVSYFLLTADYGPEPNALDPIRQRILSAQDSVKEFIFPSKKS 60

Query: 62 SQ 64
           +
Sbjct: 61 DK 62

[Close]

BLAST of CmaCh14G020320 vs. NCBI nr
Match: gi|659075274|ref|XP_008438057.1| (PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 4.5e-30
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 1


Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILS ESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQGSQSEKLGSNGVKDN 79
          QSQ  Q EKLGSNGVKDN
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

[Close]

BLAST of CmaCh14G020320 vs. NCBI nr
Match: gi|778677234|ref|XP_011650756.1| (PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 5.9e-30
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 1


Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILS ESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQGSQSEKLGSNGVKDN 79
          QSQ  Q EKLGSNGVKDN
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

[Close]

BLAST of CmaCh14G020320 vs. NCBI nr
Match: gi|1009172618|ref|XP_015867370.1| (PREDICTED: uncharacterized protein LOC107404888 [Ziziphus jujuba])

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-23
Identity = 59/79 (74.68%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          M+ P+TDKL+RRT MVATVTASYFL+TADYGPQPN LDPIKK ILS ESS+K FIFGSNN
Sbjct: 1  MLKPQTDKLVRRTAMVATVTASYFLITADYGPQPNALDPIKKAILSAESSVKEFIFGSNN 60

Query: 61 QSQGSQSEKLGSNGVKDNP 80
          QS+ S+ EKLGS   K +P
Sbjct: 61 QSEESEIEKLGSESAKKHP 79

[Close]

BLAST of CmaCh14G020320 vs. NCBI nr
Match: gi|802695462|ref|XP_012083410.1| (PREDICTED: uncharacterized protein LOC105642997 [Jatropha curcas])

HSP 1 Score: 105.5 bits (262), Expect = 4.2e-20
Identity = 49/78 (62.82%), Postives = 63/78 (80.77%), Query Frame = 1


Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
          ++NP+TDK++RRTTM+ TV ASYFLLTADYGP+PN  DPIKK +LS ESS+K +IFGS  
Sbjct: 3  VMNPKTDKIVRRTTMIGTVVASYFLLTADYGPEPNVFDPIKKALLSAESSVKEYIFGSKK 62

Query: 61 QSQGSQSEKLGSNGVKDN 79
          + +G Q EKL SN  K++
Sbjct: 63 EPEGGQMEKLSSNSAKEH 80

[Close]

BLAST of CmaCh14G020320 vs. NCBI nr
Match: gi|629113100|gb|KCW78060.1| (hypothetical protein EUGRSUZ_D02283 [Eucalyptus grandis])

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-19
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 1   MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60
           M+NPRTDKL+RRTTMVAT+TA+YFLLTADYGP+PN LDPIKK ILS E+ +KGF+FGS+ 
Sbjct: 73  MMNPRTDKLVRRTTMVATITAAYFLLTADYGPEPNALDPIKKAILSAENRVKGFVFGSSE 132

Query: 61  QSQGSQ 67
           + + SQ
Sbjct: 133 KPRESQ 138

The following BLAST results are available for this feature:

BLAST of CmaCh14G020320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh14G020320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7H0_CUCSA	4.1e-30	91.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122460 PE=4 SV=1	[more]
A0A059CJG1_EUCGR	2.5e-19	72.73	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02283 PE=4 SV=1	[more]
A0A0S3SYV2_PHAAN	5.6e-19	68.35	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G152600 PE=...	[more]
A0A151UCK2_CAJCA	7.3e-19	65.82	Uncharacterized protein OS=Cajanus cajan GN=KK1_021322 PE=4 SV=1	[more]
V4U2N6_9ROSI	7.3e-19	65.82	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023145mg PE=4 SV=1	[more]

BLAST of CmaCh14G020320 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00530.1	3.2e-18	61.54	unknown protein	[more]
AT1G01725.1	1.4e-13	53.23	unknown protein	[more]

BLAST of CmaCh14G020320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075274\|ref\|XP_008438057.1\|	4.5e-30	91.03	PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo]	[more]
gi\|778677234\|ref\|XP_011650756.1\|	5.9e-30	91.03	PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus]	[more]
gi\|1009172618\|ref\|XP_015867370.1\|	1.8e-23	74.68	PREDICTED: uncharacterized protein LOC107404888 [Ziziphus jujuba]	[more]
gi\|802695462\|ref\|XP_012083410.1\|	4.2e-20	62.82	PREDICTED: uncharacterized protein LOC105642997 [Jatropha curcas]	[more]
gi\|629113100\|gb\|KCW78060.1\|	3.6e-19	72.73	hypothetical protein EUGRSUZ_D02283 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G020320.1	CmaCh14G020320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37696	FAMILY NOT NAMED	coord: 1..73 score: 1.8
None	No IPR available	PANTHER	PTHR37696:SF1	SUBFAMILY NOT NAMED	coord: 1..73 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G020320	Cucsa.258310	Cucumber (Gy14) v1	cgycmaB0709
CmaCh14G020320	Csa3G122460	Cucumber (Chinese Long) v2	cmacuB253
CmaCh14G020320	MELO3C006116	Melon (DHL92) v3.5.1	cmameB242
CmaCh14G020320	ClCG05G001590	Watermelon (Charleston Gray)	cmawcgB233
CmaCh14G020320	CSPI03G08840	Wild cucumber (PI 183967)	cmacpiB255
CmaCh14G020320	CmoCh14G020930	Cucurbita moschata (Rifu)	cmacmoB245
CmaCh14G020320	Lsi05G020330	Bottle gourd (USVL1VR-Ls)	cmalsiB245
CmaCh14G020320	Cp4.1LG03g16860	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G020320	MELO3C006116.2	Melon (DHL92) v3.6.1	cmamedB273
CmaCh14G020320	CsaV3_3G008980	Cucumber (Chinese Long) v3	cmacucB0291
CmaCh14G020320	Cla97C05G081980	Watermelon (97103) v2	cmawmbB263
CmaCh14G020320	Bhi01G000261	Wax gourd	cmawgoB0332
CmaCh14G020320	CsGy3G008920	Cucumber (Gy14) v2	cgybcmaB318
CmaCh14G020320	Carg21007	Silver-seed gourd	carcmaB0683

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G020320	Cucurbita maxima (Rimu)	cmacmaB242
CmaCh14G020320	Cucurbita maxima (Rimu)	cmacmaB253
CmaCh14G020320	Cucurbita maxima (Rimu)	cmacmaB280
CmaCh14G020320	Cucurbita maxima (Rimu)	cmacmaB263
CmaCh14G020320	Cucurbita moschata (Rifu)	cmacmoB255
CmaCh14G020320	Cucurbita moschata (Rifu)	cmacmoB260
CmaCh14G020320	Cucurbita moschata (Rifu)	cmacmoB269
CmaCh14G020320	Cucurbita moschata (Rifu)	cmacmoB271
CmaCh14G020320	Wild cucumber (PI 183967)	cmacpiB253
CmaCh14G020320	Cucumber (Chinese Long) v2	cmacuB250
CmaCh14G020320	Watermelon (97103) v1	cmawmB242
CmaCh14G020320	Cucurbita pepo (Zucchini)	cmacpeB253
CmaCh14G020320	Cucurbita pepo (Zucchini)	cmacpeB292
CmaCh14G020320	Cucurbita pepo (Zucchini)	cmacpeB298
CmaCh14G020320	Silver-seed gourd	carcmaB0534