ClCG05G001590 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G001590
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 1598677 .. 1600640 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGTTAAGAGGAAACGCGATTTGTTCTTCGTTCAAGCAGTGAATTTCGAAATTGAGAGGTGGAATTGATAGAGGGAACAGAAATGGTGAATCGGCGAACGGACAAGTTGCTGAGAAGAACAACAATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTGAACCCAATTTTCTTGATCCTGTGAGTCCTCTAAACATCTCTCCCTTAAAATTTGTATTATCTGTTTGGTCGCCGAGAAAATTCATGGAAATATGCACTAGAATCTTGGATTTCAGTACGCCAGTTTCTTTTTACTATTCAGCAACCTAGGGATTGTTATTGTGCAATGTAACGCGGATTTGTTTGTACAGTTTATCTGTCTGTGTTGTTTTTTCCACTGTGTTTTCCTTTATCGAGTCATTGATGAACTTCCTCTTATATGTATTCTTTTCAAGTGAAAAGTGAATTGCGTCTGCAGTGGCTTTGCTTTTGGATCGATTTTTCTTTTTATGCATGTCGTGTAGTGTAGTTCAAGCTTTGTGGCTCTTGGCTTTCCTTTCGTATTTTATTCAGTTATTGTTCTTAATTTTTGTTGACAGTGTATAAGTCGTTGTATATTTCGCCTTGTACTTGATTTTAGAGCGTAGAACCTAGGATTTTTCTAAATTCTTCGTTGGTCCTGTTTTCCTTGCTAAACAATTAGTTAACACGATCTATTTTTAGTTTATGATAATTTCATCTATCGTGTTGTAAATTTGTCGAGGGTTTAACTTTTCGTTACATTGAGCTTTAATTAGATAAAAAAATTTCATTCGAGTACCTTGTCAAATTGATCAGAAAAATTATATACGTTCATCTAATCTGTAATAAGAACAATCTGTACCTTGTGGTTTCATGAGTTGCTAATTACCATTTGTTATTTTGTTCGATTTTTGAGTCATCACTTTCAATGAAGTTTGTGTCTTGCTAGATTCGTCTGTCGTTGATAATTTCTTGCTATTACAGTGAGATATGAGAACCAAGAGTAAGGAGTGAAATTTCTCTTTCTATTCACAGTCAGAAGCAAGAAGACTTAGCATTTAGCAAATTAATAATATAAGTCGAATTGGGAAGTCATTATGGTTTTAACAACTGGAAAGCATGGACATTTCAGTTATTTACTAGGAAATCTTATGCTGTGATGAATCCCTATGCATAAAATAATTATAATTTAGGCCCGTTTGGTAACCATTTGGTTTTTTATTTTTATTTTTTTGAAAATTAAGCCTGTAAACATTACTTCCATCTATTGGTTTATATGTTTTCTAGTCTAGATTTTAGTAGTGTTTTCAAAATCAAAGCCATATTTTGAAAAAAAATAAAAAAAGAGTGCTCAAAAACTTGTTTGTGTTTTGGAAAATTGGCTAAGAATTCAAATATTTGTATAGGAAATAAAAAAACTATGAGTAACAACTTGTGAGAAAACAAACACAATTTTCAAAAGCAAAAAACGAAATGGTTGCCAAATGGGGCTTTATGATCTATCGGTTTTTATTTGCTTGATGGGTGTTTGATCAAATTTCCATCTGTCTAGAAGATTGTTCATATCGTTTTGAATTCTAAAGGCCTACTTTTGGGAATGCAGATCAAAAAGTTTATACTGTCAGCAGAAAGTTCTATCAAGGGTTTCATCTTTGGATCGAATAATCAATCTCAAGAAAGTCAAAAAGAGAAGCTCGGTTCCAATGGTGTCAAGGACAATCCATGATACGTAGACTTCAAGTAGTATTTAGTTACGGTTTTATGTGTATATATCTTGAATCTACAGTTTTTACTATACATTTCCTAAAGCTTAGGTTGAGATCAAGCGTGAGTAAACCTTTTGGAGGAGTCAAATAATGAAGTTTGTTTAGATTCTAAGATATTTAATGAATTGGTTATTACCAAATCCATTTAGCATATTAACCTCAGAGATTCAAATTACTT

mRNA sequence

GGGGTTAAGAGGAAACGCGATTTGTTCTTCGTTCAAGCAGTGAATTTCGAAATTGAGAGGTGGAATTGATAGAGGGAACAGAAATGGTGAATCGGCGAACGGACAAGTTGCTGAGAAGAACAACAATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTGAACCCAATTTTCTTGATCCTATCAAAAAGTTTATACTGTCAGCAGAAAGTTCTATCAAGGGTTTCATCTTTGGATCGAATAATCAATCTCAAGAAAGTCAAAAAGAGAAGCTCGGTTCCAATGGTGTCAAGGACAATCCATGATACGTAGACTTCAAGTAGTATTTAGTTACGGTTTTATGTGTATATATCTTGAATCTACAGTTTTTACTATACATTTCCTAAAGCTTAGGTTGAGATCAAGCGTGAGTAAACCTTTTGGAGGAGTCAAATAATGAAGTTTGTTTAGATTCTAAGATATTTAATGAATTGGTTATTACCAAATCCATTTAGCATATTAACCTCAGAGATTCAAATTACTT

Coding sequence (CDS)

ATGGTGAATCGGCGAACGGACAAGTTGCTGAGAAGAACAACAATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTGAACCCAATTTTCTTGATCCTATCAAAAAGTTTATACTGTCAGCAGAAAGTTCTATCAAGGGTTTCATCTTTGGATCGAATAATCAATCTCAAGAAAGTCAAAAAGAGAAGCTCGGTTCCAATGGTGTCAAGGACAATCCATGA

Protein sequence

MVNRRTDKLLRRTTMVATVTASYFLLTADYGPEPNFLDPIKKFILSAESSIKGFIFGSNNQSQESQKEKLGSNGVKDNP

Homology

[Close]

BLAST of ClCG05G001590 vs. TrEMBL
Match: A0A0A0L7H0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122460 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.8e-33
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 1  MVNRRTDKLLRRTTMVATVTASYFLLTADYGPEPNFLDPIKKFILSAESSIKGFIFGSNN 60
          MVN+RTDKLLRRTTMVATVTASYFLLTADYGP+PNFLDP+KK ILSAESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQESQKEKLGSNGVKDN 79
          QSQE Q+EKLGSNGVKDN
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

[Close]

BLAST of ClCG05G001590 vs. TrEMBL
Match: A0A059CJG1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02283 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-20
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 1   MVNRRTDKLLRRTTMVATVTASYFLLTADYGPEPNFLDPIKKFILSAESSIKGFIFGSNN 60
           M+N RTDKL+RRTTMVAT+TA+YFLLTADYGPEPN LDPIKK ILSAE+ +KGF+FGS+ 
Sbjct: 73  MMNPRTDKLVRRTTMVATITAAYFLLTADYGPEPNALDPIKKAILSAENRVKGFVFGSSE 132

Query: 61  QSQESQ 67
           + +ESQ
Sbjct: 133 KPRESQ 138

[Close]

BLAST of ClCG05G001590 vs. TrEMBL
Match: V4U2N6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023145mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-20
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 2  VNRRTDKLLRRTTMVATVTASYFLLTADYGPEPNFLDPIKKFILSAESSIKGFIFGSNNQ 61
          +N +TDK++RRTTMVAT  ASYFLLTADYGPEPN LDPIKK ILSAESS+K FIFGS  +
Sbjct: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60

Query: 62 -SQESQKEKLGSNGVKDNP 80
            +ESQ  KL S+  K++P
Sbjct: 61 PREESQTAKLSSDNSKEHP 79

[Close]

BLAST of ClCG05G001590 vs. TrEMBL
Match: A0A067H2P8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034916mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-20
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 2  VNRRTDKLLRRTTMVATVTASYFLLTADYGPEPNFLDPIKKFILSAESSIKGFIFGSNNQ 61
          +N +TDK++RRTTMVAT  ASYFLLTADYGPEPN LDPIKK ILSAESS+K FIFGS  +
Sbjct: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60

Query: 62 -SQESQKEKLGSNGVKDNP 80
            +ESQ  KL S+  K++P
Sbjct: 61 PREESQTAKLSSDNSKEHP 79

[Close]

BLAST of ClCG05G001590 vs. TrEMBL
Match: A0A0S3SYV2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G152600 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.9e-20
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 1  MVNRRTDKLLRRTTMVATVTASYFLLTADYGPEPNFLDPIKKFILSAESSIKGFIFGSNN 60
          ++N RT+KL+RR T+VATVTASYFLLTADYGP+PN LDPIKK ILSA+S +KG+I GS  
Sbjct: 3  LMNPRTEKLVRRLTIVATVTASYFLLTADYGPQPNALDPIKKQILSAQSMVKGYILGSKI 62

Query: 61 QSQESQKEKLGSNGVKDNP 80
          +SQE+Q  KL SN  KD P
Sbjct: 63 ESQENQLGKLDSN--KDQP 79

[Close]

BLAST of ClCG05G001590 vs. TAIR10
Match: AT4G00530.1 (AT4G00530.1 unknown protein)

HSP 1 Score: 86.3 bits (212), Expect = 9.4e-18
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1


Query: 2  VNRRTDKLLRRTTMVATVTASYFLLTADYGPEPNFLDPIKKFILSAESSIKGFIFGSNNQ 61
          +N +TDK++RRTTMVAT  ASYFLLT DYGPEPN LDPIK+ IL+A+ S+K FIFG   +
Sbjct: 1  MNPQTDKVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIKRKILAAQDSVKQFIFGPKGE 60

[Close]

BLAST of ClCG05G001590 vs. TAIR10
Match: AT1G01725.1 (AT1G01725.1 unknown protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-13
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1


Query: 2  VNRRTDKLLRRTTMVATVTASYFLLTADYGPEPNFLDPIKKFILSAESSIKGFIFGSNNQ 61
          +N + +K+++ T++VAT   SYFLLTADYGPEPN LDPI++ ILSA+ S+K FIF S   
Sbjct: 1  MNPQIEKVVKVTSVVATAVVSYFLLTADYGPEPNALDPIRQRILSAQDSVKEFIFPSKKS 60

Query: 62 SQ 64
           +
Sbjct: 61 DK 62

[Close]

BLAST of ClCG05G001590 vs. NCBI nr
Match: gi|659075274|ref|XP_008438057.1| (PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 7.5e-33
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 1  MVNRRTDKLLRRTTMVATVTASYFLLTADYGPEPNFLDPIKKFILSAESSIKGFIFGSNN 60
          MVN+RTDKLLRRTTMVATVTASYFLLTADYGP+PNFLDP+KK ILSAESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQESQKEKLGSNGVKDN 79
          QSQE Q+EKLGSNGVKDN
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

[Close]

BLAST of ClCG05G001590 vs. NCBI nr
Match: gi|778677234|ref|XP_011650756.1| (PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 9.7e-33
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 1  MVNRRTDKLLRRTTMVATVTASYFLLTADYGPEPNFLDPIKKFILSAESSIKGFIFGSNN 60
          MVN+RTDKLLRRTTMVATVTASYFLLTADYGP+PNFLDP+KK ILSAESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQESQKEKLGSNGVKDN 79
          QSQE Q+EKLGSNGVKDN
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

[Close]

BLAST of ClCG05G001590 vs. NCBI nr
Match: gi|1009172618|ref|XP_015867370.1| (PREDICTED: uncharacterized protein LOC107404888 [Ziziphus jujuba])

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-24
Identity = 59/79 (74.68%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 1  MVNRRTDKLLRRTTMVATVTASYFLLTADYGPEPNFLDPIKKFILSAESSIKGFIFGSNN 60
          M+  +TDKL+RRT MVATVTASYFL+TADYGP+PN LDPIKK ILSAESS+K FIFGSNN
Sbjct: 1  MLKPQTDKLVRRTAMVATVTASYFLITADYGPQPNALDPIKKAILSAESSVKEFIFGSNN 60

Query: 61 QSQESQKEKLGSNGVKDNP 80
          QS+ES+ EKLGS   K +P
Sbjct: 61 QSEESEIEKLGSESAKKHP 79

[Close]

BLAST of ClCG05G001590 vs. NCBI nr
Match: gi|470142179|ref|XP_004306793.1| (PREDICTED: uncharacterized protein LOC101303265 [Fragaria vesca subsp. vesca])

HSP 1 Score: 107.8 bits (268), Expect = 8.6e-21
Identity = 53/78 (67.95%), Postives = 63/78 (80.77%), Query Frame = 1


Query: 2  VNRRTDKLLRRTTMVATVTASYFLLTADYGPEPNFLDPIKKFILSAESSIKGFIFGSNNQ 61
          +N + DKL+RRTT+VATVTASYFLLTADYG EPN LDPIKK I SAESS+K F+FGS  Q
Sbjct: 1  MNPQMDKLVRRTTIVATVTASYFLLTADYGSEPNVLDPIKKAIQSAESSVKDFVFGSKTQ 60

Query: 62 SQESQKEKLGSNGVKDNP 80
            ES+ +KL SN  K++P
Sbjct: 61 PPESEVKKLSSNSAKEHP 78

[Close]

BLAST of ClCG05G001590 vs. NCBI nr
Match: gi|629113100|gb|KCW78060.1| (hypothetical protein EUGRSUZ_D02283 [Eucalyptus grandis])

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-20
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 1   MVNRRTDKLLRRTTMVATVTASYFLLTADYGPEPNFLDPIKKFILSAESSIKGFIFGSNN 60
           M+N RTDKL+RRTTMVAT+TA+YFLLTADYGPEPN LDPIKK ILSAE+ +KGF+FGS+ 
Sbjct: 73  MMNPRTDKLVRRTTMVATITAAYFLLTADYGPEPNALDPIKKAILSAENRVKGFVFGSSE 132

Query: 61  QSQESQ 67
           + +ESQ
Sbjct: 133 KPRESQ 138

The following BLAST results are available for this feature:

BLAST of ClCG05G001590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7H0_CUCSA	6.8e-33	92.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122460 PE=4 SV=1	[more]
A0A059CJG1_EUCGR	1.7e-20	75.76	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02283 PE=4 SV=1	[more]
V4U2N6_9ROSI	2.3e-20	68.35	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023145mg PE=4 SV=1	[more]
A0A067H2P8_CITSI	2.3e-20	68.35	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034916mg PE=4 SV=1	[more]
A0A0S3SYV2_PHAAN	3.9e-20	68.35	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G152600 PE=...	[more]

BLAST of ClCG05G001590 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00530.1	9.4e-18	66.67	unknown protein	[more]
AT1G01725.1	1.1e-13	54.84	unknown protein	[more]

BLAST of ClCG05G001590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075274\|ref\|XP_008438057.1\|	7.5e-33	92.31	PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo]	[more]
gi\|778677234\|ref\|XP_011650756.1\|	9.7e-33	92.31	PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus]	[more]
gi\|1009172618\|ref\|XP_015867370.1\|	1.7e-24	74.68	PREDICTED: uncharacterized protein LOC107404888 [Ziziphus jujuba]	[more]
gi\|470142179\|ref\|XP_004306793.1\|	8.6e-21	67.95	PREDICTED: uncharacterized protein LOC101303265 [Fragaria vesca subsp. vesca]	[more]
gi\|629113100\|gb\|KCW78060.1\|	2.5e-20	75.76	hypothetical protein EUGRSUZ_D02283 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006457	protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G001590.1	ClCG05G001590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37696	FAMILY NOT NAMED	coord: 1..73 score: 1.7
None	No IPR available	PANTHER	PTHR37696:SF1	SUBFAMILY NOT NAMED	coord: 1..73 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G001590	Csa3G122460	Cucumber (Chinese Long) v2	cuwcgB222
ClCG05G001590	MELO3C006116	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G001590	Cla97C05G081980	Watermelon (97103) v2	wcgwmbB229
ClCG05G001590	Bhi01G000261	Wax gourd	wcgwgoB430
ClCG05G001590	CSPI03G08840	Wild cucumber (PI 183967)	cpiwcgB226
ClCG05G001590	Cucsa.258310	Cucumber (Gy14) v1	cgywcgB451
ClCG05G001590	CmaCh14G020320	Cucurbita maxima (Rimu)	cmawcgB233
ClCG05G001590	Lsi05G020330	Bottle gourd (USVL1VR-Ls)	lsiwcgB335
ClCG05G001590	CsGy3G008920	Cucumber (Gy14) v2	cgybwcgB203
ClCG05G001590	MELO3C006116.2	Melon (DHL92) v3.6.1	medwcgB416
ClCG05G001590	Carg21007	Silver-seed gourd	carwcgB0474
ClCG05G001590	CsaV3_3G008980	Cucumber (Chinese Long) v3	cucwcgB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G001590	Watermelon (Charleston Gray)	wcgwcgB154
ClCG05G001590	Cucurbita maxima (Rimu)	cmawcgB563
ClCG05G001590	Cucurbita maxima (Rimu)	cmawcgB737
ClCG05G001590	Cucurbita maxima (Rimu)	cmawcgB740
ClCG05G001590	Cucurbita moschata (Rifu)	cmowcgB219
ClCG05G001590	Cucurbita moschata (Rifu)	cmowcgB363
ClCG05G001590	Cucurbita moschata (Rifu)	cmowcgB560
ClCG05G001590	Cucurbita moschata (Rifu)	cmowcgB743
ClCG05G001590	Cucurbita moschata (Rifu)	cmowcgB744
ClCG05G001590	Melon (DHL92) v3.5.1	mewcgB433
ClCG05G001590	Watermelon (97103) v1	wcgwmB286
ClCG05G001590	Watermelon (97103) v1	wcgwmB290
ClCG05G001590	Cucurbita pepo (Zucchini)	cpewcgB044
ClCG05G001590	Cucurbita pepo (Zucchini)	cpewcgB559
ClCG05G001590	Cucurbita pepo (Zucchini)	cpewcgB680
ClCG05G001590	Cucurbita pepo (Zucchini)	cpewcgB786
ClCG05G001590	Cucurbita pepo (Zucchini)	cpewcgB787
ClCG05G001590	Silver-seed gourd	carwcgB0376