Csa3G122460 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G122460
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 7281682 .. 7283780 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAAAAAAAATGTATAAAAGGGTTTTAAGCGGTTAAAGGGAATCGCGATTTCTTCTCCGTTCGAGCAATTGATTCGAAATTGAGAGGTCGAATTGATACAAAAAATGGTGAATCAGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTTCTCGATCCTGTGAGTCCTCTATCCATCTCTCCCTCAAAATCTTTAATTGTCTGTTTGGTCGCCGGGAAAATCCATGCAAAAAACCACTAGGATCCTGGATTTTTAGTACGCCGGTTTCTTCTTACTATTCAGCAACCTAGGGATTGTTTATTGTGCAAATGTAACGCGGATTTGTTTGTAGAGTTTATTTGTCTTATCCGTATTCTCTTCAAGTGGAAATTAAATTGCGTTTGCAAGGGTTTGGATTTCTAATTGGTTATTCTTTTTATACGTGTCGTGTAGTCTAGTTCAAGCTTTGTGGTTCTTGGATTTCTAGTCGTATTTTTTATTCAGTTATTGTTCGTAATTTTTGTTGACTGTGTAGAATTTGTTGTTTATTATGCCTAGTACTTGATTTTAGTGTGGAAAACCTATGTTTTTTTTTTCTAAATTCTTCGTCGGTCCTGTTTTCCTCGCTAAATTGACAGATGTTTAACACGATCCGTGTTTAGTTTATGATAAGCTCATCTAACGTGTTGTAAAATTGTTGAGGCTTTAACTCTACATTACATTGAGCTTAATTAAATGAAATTTTTTACTTCCAGTTCATTCTCAAATTGATAAAAAAAAAGATATATTACTTCATGTGATGATTCTGATCCATAATAAGAACAATCTGTAGTTTGTGGTTTCATGAATTGCTAATTATCATTCGTTGTAGTGTTTATTTTTTTGAAAAAGAGACAAACTTCTTTATTAATGATAAAATCTCAAAGTACAAAAGGTATATATATTAAGAATAATAAAGAAGCCTAAAAGCAAAAAGGTAGGGGATGAGAAGGTGCACTCGGGCATCTCACATTTGTTATAGTGTTCAATTTTTTAATATCACTTCCAATGAAGTTTATGTCTTGCTAGAATTGTCTCTTAATGATGATTTCTTGCTATTGCAGTAAGATATGAGAACTAAGAGTAAAGATTGAAGTTTCCCTTTCTGTTACACTCAGAAGCTAGAAGACTTAGCATTTAACTAATTAAAATTATAAGTTGAATTGAGAAGTCATTGTGGTTCTGCTTCTACTTGTAATAAACATCTGGAAAGCAGTGGATATTTCAGTTATTTACTTGTTACAACACAGGAAAATCTTATGCTGTGATGAATCCTTGTGCATAAAAACACCACTTTCTTTGTCTTGTGGTCTAGAGACTTTTAGATTGTTTTCAAAATCAAAGTCCTTTCCATAACCTTGTTTGAAATTGGCTGAGAACTCACATGTTCATATAGGAATTATGAAAATCCTGAAGCAAGGAGTTGCTAGAAAACAAGCACAGTTATCAAAAACTAAAAACCGAATGGTTACTAAACGGGTCCATATTGATCTATTGGTTTTTTATATGCTTGATTGGTGTTTGATCAAATTTCCAGATGCTTAGAAGATTGTAGTTTTGAATTCTAATGGCCTAATCTGGGAATGGCAGGTCAAAAAGGTTATACTGTCAGCAGAAAGTTCTATAAAGGGATTCATCTTTGGATCAAATAATCAATCTCAAGAAGGTCAAAGAGAGAAGCTCGGCTCCAATGGCGTCAAGGACAATGCATGATAAGTAAACTTCAAAGACTTAGTTACGAATTTATGTATATATGTCTTGAATCTGCAGTTTGTTATTATACATTTCCTAAAGCTTAGGTTGAGATCATGCGTGAGTAAACCTTTTGGAGGAGTAAAATAATAATGCAGTTTGTTTAGACTTTAAGATGTTTAATGAATTGGTTTATGACCAAACCCATTTAGCATATTAACCTCATAGATTCAAATTAGTTATAGCATATTCCTGGATTGGTGTAGGGTTCTCCACATCAGTACCCCTTTACAAATAAGGTCGAATCTATCGACATTAACGTGG

mRNA sequence

ATGGTGAATCAGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTTCTCGATCCTGTCAAAAAGGTTATACTGTCAGCAGAAAGTTCTATAAAGGGATTCATCTTTGGATCAAATAATCAATCTCAAGAAGGTCAAAGAGAGAAGCTCGGCTCCAATGGCGTCAAGGACAATGCATGA

Coding sequence (CDS)

ATGGTGAATCAGCGAACAGACAAGTTGCTGAGAAGAACAACTATGGTGGCCACTGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTTCTCGATCCTGTCAAAAAGGTTATACTGTCAGCAGAAAGTTCTATAAAGGGATTCATCTTTGGATCAAATAATCAATCTCAAGAAGGTCAAAGAGAGAAGCTCGGCTCCAATGGCGTCAAGGACAATGCATGA

Protein sequence

MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNNQSQEGQREKLGSNGVKDNA*

Homology

[Close]

BLAST of Csa3G122460 vs. TrEMBL
Match: A0A0A0L7H0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122460 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 6.6e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVKDNA 80
          QSQEGQREKLGSNGVKDNA
Sbjct: 61 QSQEGQREKLGSNGVKDNA 79

[Close]

BLAST of Csa3G122460 vs. TrEMBL
Match: A0A0S3SYV2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G152600 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.7e-20
Identity = 51/73 (69.86%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          ++N RT+KL+RR T+VATVTASYFLLTADYGPQPN LDP+KK ILSA+S +KG+I GS  
Sbjct: 3  LMNPRTEKLVRRLTIVATVTASYFLLTADYGPQPNALDPIKKQILSAQSMVKGYILGSKI 62

Query: 61 QSQEGQREKLGSN 74
          +SQE Q  KL SN
Sbjct: 63 ESQENQLGKLDSN 75

[Close]

BLAST of Csa3G122460 vs. TrEMBL
Match: A0A059CJG1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02283 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.7e-20
Identity = 47/66 (71.21%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 1   MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
           M+N RTDKL+RRTTMVAT+TA+YFLLTADYGP+PN LDP+KK ILSAE+ +KGF+FGS+ 
Sbjct: 73  MMNPRTDKLVRRTTMVATITAAYFLLTADYGPEPNALDPIKKAILSAENRVKGFVFGSSE 132

Query: 61  QSQEGQ 67
           + +E Q
Sbjct: 133 KPRESQ 138

[Close]

BLAST of Csa3G122460 vs. TrEMBL
Match: A0A151UCK2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_021322 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 49/73 (67.12%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          ++N RT+KL+RR T+V TV ASYFLLTADYGPQPN LDP+KK ILSAES++K ++FGS  
Sbjct: 3  LMNPRTEKLVRRLTIVTTVAASYFLLTADYGPQPNALDPIKKQILSAESTVKEYVFGSKK 62

Query: 61 QSQEGQREKLGSN 74
          +SQE Q  KL SN
Sbjct: 63 ESQENQTGKLDSN 75

[Close]

BLAST of Csa3G122460 vs. TrEMBL
Match: V4U2N6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023145mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.7e-19
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 2  VNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNNQ 61
          +N +TDK++RRTTMVAT  ASYFLLTADYGP+PN LDP+KK ILSAESS+K FIFGS  +
Sbjct: 1  MNPQTDKIVRRTTMVATAVASYFLLTADYGPEPNALDPIKKAILSAESSVKEFIFGSKKE 60

Query: 62 -SQEGQREKLGSNGVKDN 79
            +E Q  KL S+  K++
Sbjct: 61 PREESQTAKLSSDNSKEH 78

[Close]

BLAST of Csa3G122460 vs. TAIR10
Match: AT4G00530.1 (AT4G00530.1 unknown protein)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-17
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 1


Query: 2  VNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNNQ 61
          +N +TDK++RRTTMVAT  ASYFLLT DYGP+PN LDP+K+ IL+A+ S+K FIFG   +
Sbjct: 1  MNPQTDKVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIKRKILAAQDSVKQFIFGPKGE 60

[Close]

BLAST of Csa3G122460 vs. TAIR10
Match: AT1G01725.1 (AT1G01725.1 unknown protein)

HSP 1 Score: 71.6 bits (174), Expect = 2.4e-13
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1


Query: 2  VNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNNQ 61
          +N + +K+++ T++VAT   SYFLLTADYGP+PN LDP+++ ILSA+ S+K FIF S   
Sbjct: 1  MNPQIEKVVKVTSVVATAVVSYFLLTADYGPEPNALDPIRQRILSAQDSVKEFIFPSKKS 60

Query: 62 SQ 64
           +
Sbjct: 61 DK 62

[Close]

BLAST of Csa3G122460 vs. NCBI nr
Match: gi|778677234|ref|XP_011650756.1| (PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 9.5e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVKDNA 80
          QSQEGQREKLGSNGVKDNA
Sbjct: 61 QSQEGQREKLGSNGVKDNA 79

[Close]

BLAST of Csa3G122460 vs. NCBI nr
Match: gi|659075274|ref|XP_008438057.1| (PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-35
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKK+ILSAESSIKGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVKDNA 80
          QSQEGQREKLGSNGVKDNA
Sbjct: 61 QSQEGQREKLGSNGVKDNA 79

[Close]

BLAST of Csa3G122460 vs. NCBI nr
Match: gi|1009172618|ref|XP_015867370.1| (PREDICTED: uncharacterized protein LOC107404888 [Ziziphus jujuba])

HSP 1 Score: 117.9 bits (294), Expect = 8.4e-24
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          M+  +TDKL+RRT MVATVTASYFL+TADYGPQPN LDP+KK ILSAESS+K FIFGSNN
Sbjct: 1  MLKPQTDKLVRRTAMVATVTASYFLITADYGPQPNALDPIKKAILSAESSVKEFIFGSNN 60

Query: 61 QSQEGQREKLGSNGVK 77
          QS+E + EKLGS   K
Sbjct: 61 QSEESEIEKLGSESAK 76

[Close]

BLAST of Csa3G122460 vs. NCBI nr
Match: gi|802695462|ref|XP_012083410.1| (PREDICTED: uncharacterized protein LOC105642997 [Jatropha curcas])

HSP 1 Score: 107.8 bits (268), Expect = 8.7e-21
Identity = 48/78 (61.54%), Postives = 63/78 (80.77%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          ++N +TDK++RRTTM+ TV ASYFLLTADYGP+PN  DP+KK +LSAESS+K +IFGS  
Sbjct: 3  VMNPKTDKIVRRTTMIGTVVASYFLLTADYGPEPNVFDPIKKALLSAESSVKEYIFGSKK 62

Query: 61 QSQEGQREKLGSNGVKDN 79
          + + GQ EKL SN  K++
Sbjct: 63 EPEGGQMEKLSSNSAKEH 80

[Close]

BLAST of Csa3G122460 vs. NCBI nr
Match: gi|965611796|dbj|BAT97935.1| (hypothetical protein VIGAN_09152600 [Vigna angularis var. angularis])

HSP 1 Score: 104.4 bits (259), Expect = 9.6e-20
Identity = 51/73 (69.86%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60
          ++N RT+KL+RR T+VATVTASYFLLTADYGPQPN LDP+KK ILSA+S +KG+I GS  
Sbjct: 3  LMNPRTEKLVRRLTIVATVTASYFLLTADYGPQPNALDPIKKQILSAQSMVKGYILGSKI 62

Query: 61 QSQEGQREKLGSN 74
          +SQE Q  KL SN
Sbjct: 63 ESQENQLGKLDSN 75

The following BLAST results are available for this feature:

BLAST of Csa3G122460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7H0_CUCSA	6.6e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122460 PE=4 SV=1	[more]
A0A0S3SYV2_PHAAN	6.7e-20	69.86	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G152600 PE=...	[more]
A0A059CJG1_EUCGR	6.7e-20	71.21	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02283 PE=4 SV=1	[more]
A0A151UCK2_CAJCA	1.5e-19	67.12	Uncharacterized protein OS=Cajanus cajan GN=KK1_021322 PE=4 SV=1	[more]
V4U2N6_9ROSI	5.7e-19	64.10	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023145mg PE=4 SV=1	[more]

BLAST of Csa3G122460 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00530.1	1.6e-17	63.33	unknown protein	[more]
AT1G01725.1	2.4e-13	51.61	unknown protein	[more]

BLAST of Csa3G122460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778677234\|ref\|XP_011650756.1\|	9.5e-36	100.00	PREDICTED: uncharacterized protein LOC105434815 [Cucumis sativus]	[more]
gi\|659075274\|ref\|XP_008438057.1\|	1.2e-35	98.73	PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo]	[more]
gi\|1009172618\|ref\|XP_015867370.1\|	8.4e-24	75.00	PREDICTED: uncharacterized protein LOC107404888 [Ziziphus jujuba]	[more]
gi\|802695462\|ref\|XP_012083410.1\|	8.7e-21	61.54	PREDICTED: uncharacterized protein LOC105642997 [Jatropha curcas]	[more]
gi\|965611796\|dbj\|BAT97935.1\|	9.6e-20	69.86	hypothetical protein VIGAN_09152600 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU095754	cucumber EST collection version 3.0	transcribed_cluster
CU104229	cucumber EST collection version 3.0	transcribed_cluster
CU165654	cucumber EST collection version 3.0	transcribed_cluster
CU177122	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G122460.1	Csa3G122460.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU177122	CU177122	transcribed_cluster
CU104229	CU104229	transcribed_cluster
CU095754	CU095754	transcribed_cluster
CU165654	CU165654	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37696	FAMILY NOT NAMED	coord: 1..73 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G122460	MELO3C006116	Melon (DHL92) v3.5.1	cumeB236
Csa3G122460	ClCG05G001590	Watermelon (Charleston Gray)	cuwcgB222
Csa3G122460	Lsi05G020330	Bottle gourd (USVL1VR-Ls)	culsiB209
Csa3G122460	MELO3C006116.2	Melon (DHL92) v3.6.1	cumedB223
Csa3G122460	Cla97C05G081980	Watermelon (97103) v2	cuwmbB204
Csa3G122460	Bhi01G000261	Wax gourd	cuwgoB272
Csa3G122460	CSPI03G08840	Wild cucumber (PI 183967)	cpicuB120
Csa3G122460	Cucsa.258310	Cucumber (Gy14) v1	cgycuB366
Csa3G122460	CmaCh14G020320	Cucurbita maxima (Rimu)	cmacuB253
Csa3G122460	CsGy3G008920	Cucumber (Gy14) v2	cgybcuB109
Csa3G122460	Carg21007	Silver-seed gourd	carcuB0522

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G122460	Cucurbita moschata (Rifu)	cmocuB239
Csa3G122460	Cucurbita moschata (Rifu)	cmocuB806
Csa3G122460	Cucurbita moschata (Rifu)	cmocuB818
Csa3G122460	Melon (DHL92) v3.5.1	cumeB254
Csa3G122460	Watermelon (Charleston Gray)	cuwcgB238
Csa3G122460	Watermelon (97103) v1	cuwmB233
Csa3G122460	Watermelon (97103) v1	cuwmB252
Csa3G122460	Cucurbita pepo (Zucchini)	cpecuB038
Csa3G122460	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G122460	Cucurbita pepo (Zucchini)	cpecuB852
Csa3G122460	Melon (DHL92) v3.6.1	cumedB245
Csa3G122460	Silver-seed gourd	carcuB0414
Csa3G122460	Cucumber (Gy14) v1	cgycuB431
Csa3G122460	Cucurbita maxima (Rimu)	cmacuB814
Csa3G122460	Cucurbita maxima (Rimu)	cmacuB828