Lsi05G001970 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G001970
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cytochrome b-c1 complex subunit 6
Location	chr05 : 2754822 .. 2757740 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTTATTGTCTTTCCATGTCATAGGCGTGCGTGAAGAGAATCCAAGGGGATGACGGCGGTCATAAGCATTGCACTGGACAGTATTTTGATTACTGGTCTTGCATTGACAAATGTGTAAGTAACTTTTGGTTTTGATAGAAAGTAAATTGCAGGGAAAGTTGTACATAAACAAGTTCATTTTTTTTCCTTAAAAAAACTGAATAACCTCGAACTAACTTCAAAATTCAAATACACTTTTTCTTGCAGGTTGCACCAAAACTATTTACGAAACTAAAGTAATGAAGAGTTTTGTTAGGGATGTGGGGATCCTATCCTTTTGCTTGCAGCATTTTTCTGATTTTTTATGCAATGTCGTTTTGTGGACGTGATTTTTGCATCTACAAAAAATGCCAAGGGCTGTGCAATTTTATAAAAACTATGATAGACCTTTAACCATGGTCAATAAGAAAGGATCTTGGATTCACGTTTGGAGCTTGTGAAAACTTCTTCCTTGAGTTTTTATCATTTTGCTCTATATAAACATAAGTGTTCCATCGAATCCAGTAGTAGTTTCAGGAAACAAATGTTTAGCAACATGATCCCCTATTGAATTTGCTGTTCCTTGGTTTATCAAATATGGCTGTGTAGTGATTGAGGTTTAATTTGGCGGAAGTAGATGATCACTTTTTGGTCTAATGCCTGTATTGATATCCAAACTTCTTCGTATTCGATAACATGTTGTTCCGTTTAGAAACTAATTGATAATGTGATGAGTAGTTCATATGTCAGGTAAATAATTTGAGGTTCCTTGATTTTTTAGATGTGGATCTTCGCAAGCTTTAATCTTCCTGCTTTCTCAAGTAAACTCTTTATTAGATAGTTTGTCAAATTTTTTTTCTCGAATCATTGTCGAGCTGGAAAATTGAACATCAATCTTTAAAATGGTCGGAAGTGTCTAGGTGTCCAATATTGTAAGAGAGGCTAATGTATAGGGGTATGGTAATTGTAGCTAGCTAGTCGTTGTTTCAAAGATTGAAATTAATTTACTTACATATGTATTTTGTTAAATTACAAGTTAGCGGTTGACATTTAGTTTTGCATTTATTTGTCCTTGAACTTTACAAAATATCTGATGTTCTTGAATTCTAAAATATGTTTCTTGAACTTTTAAGTTTTATCATTTTGGCCTTATTGAAATTCTTTTAATTTTACAAAACAAAATTGAAAATTTATAATCTTATTAGACATGAAATTGAAATTTATATCTAATAGATTTATGAGTGTTCAAATGATTTGAAAACTCAAACATGGGTTAGGTTAGAACCAAATAATGAAAAAAAAAAAAAAACATGATTGATGACCCAACTTAATCTAACTTGAAATTTAAAAGTTGGGTTAGAGATCAGATCTTTTGAATAGCTGACCTAACTAATTTAAATTTTTGGTTTGGTCCAAAATATTCTCAATCCAACCCAATCCAACCCAACATGTGAATACCTGTAGATTTGTTAATTTTTACCAATTTTGAATATGTTAAATATTTATTGGAACAAAATTGAATTTGATTTAACCATGAAACAAAAAAACATTGGACTTTATGTTGCCATAGGTTATTAGGAAATAAAATATTGGTTAAAACGCTTATTTCAATTTCACTATTCCTGTCATTTTAAAATTTTAAACTCGTCCGAGTATTCTTTTCCTCCCAAAAAAAGAAAAAGAAAAAAAAATCTGTCTTTATATTTAAATTTTCATCCCAATAATTGCATTCTTGATGTAGATTTTTTACCTTATTTGTGTATAATAGTTTTTTTTTCTTCAATTTTTTTTTTTTAATTTTAAATATATCATATATGTCAGTTGCTATTGATTAAAGAGGTAGATTTGAGGGTTCATTAGTTAACTAACATCGTTAGTCAAATAGAGGACTTTAGCATGTGTTACGATGGACATGATTTGTGAAGATTAGCCTATACCTATTTAATGTAATATTAAATAAAAAAATTTCAAACAAAAATTATATTAAAACAACCACAACTTTTAAAATCATATGAACCAGATTGAAACAAAAATCATAAAATCAAATTTGTAATTTTAATTAGCTTTCTCTAATTAACTGATGTTTAAAAACCCAATAATACATCACGGAAAGTGGAAATATGCACAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAGAGTAAGAAAAACTACAAATATAAATACAAATTTGGATCAAACAGAGAAAAGAAAAAATCTTAACCATTTCATAAACAACCCTAACTCTGAATCTCCCTCCCAAAAATGACAATTTCCACCATTGAAAAGAGCTTAACTACCATTTGATGAGAGGGACTCAACAACCCATTTCTCGCTTCCGCCGTCGTTGTCGCGGCCGCCGCTTTTGTCATCTTTACTAGGACCGAAAGAAGAAGAATCTTCGATCAACGTCGTCGATGTCGCTGTATTGTTATTCTCTTTATTAATGAGCGAAGAAATGGCGGCGGCTACGGCGACTCGAAACTTAGGGTCAGAAGCAATAGCAGACATGCTCTCGGGCGTGAACGGTGGCTTATTATCATCAGCCGGTTTCCACGGGCGGCGGTTGAGGGGAGTCAAAAGATGATTAGGTTGAAAATTGGTATGGTAAAAGGAATTAGGGTTGGTATTGATCCAATTGGAGGATTGGGGGAAGTTTGA

mRNA sequence

ATGATGGCGTGCGTGAAGAGAATCCAAGGGGATGACGGCGGTCATAAGCATTGCACTGGACAGTATTTTGATTACTGGTCTTGCATTGACAAATGTGGACTCAACAACCCATTTCTCGCTTCCGCCGTCGTTGTCGCGGCCGCCGCTTTTGTCATCTTTACTAGGACCGAAAGAAGAAGAATCTTCGATCAACGTCGTCGATGTCGCTGTATTGTTATTCTCTTTATTAATGAGCGAAGAAATGGCGGCGGCTACGGCGACTCGAAACTTAGGGTCAGAAGCAATAGCAGACATGCTCTCGGGCGTGAACGGTGGCTTATTATCATCAGCCGGTTTCCACGGGCGGCGGTTGAGGGGAGTCAAAAGATGATTAGGTTGAAAATTGGTATGGTAAAAGGAATTAGGGTTGGTATTGATCCAATTGGAGGATTGGGGGAAGTTTGA

Coding sequence (CDS)

ATGATGGCGTGCGTGAAGAGAATCCAAGGGGATGACGGCGGTCATAAGCATTGCACTGGACAGTATTTTGATTACTGGTCTTGCATTGACAAATGTGGACTCAACAACCCATTTCTCGCTTCCGCCGTCGTTGTCGCGGCCGCCGCTTTTGTCATCTTTACTAGGACCGAAAGAAGAAGAATCTTCGATCAACGTCGTCGATGTCGCTGTATTGTTATTCTCTTTATTAATGAGCGAAGAAATGGCGGCGGCTACGGCGACTCGAAACTTAGGGTCAGAAGCAATAGCAGACATGCTCTCGGGCGTGAACGGTGGCTTATTATCATCAGCCGGTTTCCACGGGCGGCGGTTGAGGGGAGTCAAAAGATGATTAGGTTGAAAATTGGTATGGTAAAAGGAATTAGGGTTGGTATTGATCCAATTGGAGGATTGGGGGAAGTTTGA

Protein sequence

MMACVKRIQGDDGGHKHCTGQYFDYWSCIDKCGLNNPFLASAVVVAAAAFVIFTRTERRRIFDQRRRCRCIVILFINERRNGGGYGDSKLRVRSNSRHALGRERWLIIISRFPRAAVEGSQKMIRLKIGMVKGIRVGIDPIGGLGEV

Homology

[Close]

BLAST of Lsi05G001970 vs. Swiss-Prot
Match: QCR6_SOLTU (Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 6.7e-11
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1


Query: 3  ACVKRIQGDDGGHKHCTGQYFDYWSCIDKC 33
          AC KR++GD+ GHKHCTGQYFDYW CIDKC
Sbjct: 30 ACTKRVEGDESGHKHCTGQYFDYWHCIDKC 59

[Close]

BLAST of Lsi05G001970 vs. TrEMBL
Match: A0A067L3J7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25188 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 3  ACVKRIQGDDGGHKHCTGQYFDYWSCIDKCGLNNPFL 40
          ACVKRI+GD+ GHKHCTGQYFDYWSC+DKC LN  FL
Sbjct: 4  ACVKRIRGDESGHKHCTGQYFDYWSCVDKCELNLAFL 40

[Close]

BLAST of Lsi05G001970 vs. TrEMBL
Match: A0A0A0L6I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G212480 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.0e-11
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1


Query: 3   ACVKRIQGDDGGHKHCTGQYFDYWSCIDKC 33
           ACVKRIQGDD GHKHCTGQYFDYWSCIDKC
Sbjct: 89  ACVKRIQGDDSGHKHCTGQYFDYWSCIDKC 118

[Close]

BLAST of Lsi05G001970 vs. TrEMBL
Match: A0A087HNR6_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G170400 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-10
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1


Query: 3  ACVKRIQGDDGGHKHCTGQYFDYWSCIDKCGLNNPFLASAVVV 46
          ACVKRIQGDD GHKHCTGQYFDYW CIDKC  ++  L  + V+
Sbjct: 43 ACVKRIQGDDSGHKHCTGQYFDYWHCIDKCVSSSSMLCFSHVL 85

[Close]

BLAST of Lsi05G001970 vs. TrEMBL
Match: A0A0D3DPB3_BRAOL (Cytochrome b-c1 complex subunit 6 OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-10
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 1


Query: 3  ACVKRIQGDDGGHKHCTGQYFDYWSCIDKC 33
          ACVKRIQGDD GHKHCTGQYFDYW CIDKC
Sbjct: 43 ACVKRIQGDDSGHKHCTGQYFDYWQCIDKC 72

[Close]

BLAST of Lsi05G001970 vs. TrEMBL
Match: A0A078IRH2_BRANA (BnaA08g31320D protein OS=Brassica napus GN=BnaA08g31320D PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-10
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 1


Query: 3  ACVKRIQGDDGGHKHCTGQYFDYWSCIDKC 33
          ACVKRIQGDD GHKHCTGQYFDYW CIDKC
Sbjct: 52 ACVKRIQGDDSGHKHCTGQYFDYWQCIDKC 81

[Close]

BLAST of Lsi05G001970 vs. TAIR10
Match: AT1G15120.2 (AT1G15120.2 Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 1


Query: 3   ACVKRIQGDDGGHKHCTGQYFDYWSCIDKC 33
           ACVKRIQGDD GHKHCTGQYFDYW CIDKC
Sbjct: 97  ACVKRIQGDDSGHKHCTGQYFDYWQCIDKC 126

[Close]

BLAST of Lsi05G001970 vs. TAIR10
Match: AT2G01090.1 (AT2G01090.1 Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-12
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1


Query: 3  ACVKRIQGDDGGHKHCTGQYFDYWSCIDKC 33
          ACVKRIQ D+ GHKHCTGQYFDYW C+DKC
Sbjct: 30 ACVKRIQDDESGHKHCTGQYFDYWHCVDKC 59

[Close]

BLAST of Lsi05G001970 vs. NCBI nr
Match: gi|643736731|gb|KDP43002.1| (hypothetical protein JCGZ_25188 [Jatropha curcas])

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-11
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 3  ACVKRIQGDDGGHKHCTGQYFDYWSCIDKCGLNNPFL 40
          ACVKRI+GD+ GHKHCTGQYFDYWSC+DKC LN  FL
Sbjct: 4  ACVKRIRGDESGHKHCTGQYFDYWSCVDKCELNLAFL 40

[Close]

BLAST of Lsi05G001970 vs. NCBI nr
Match: gi|449445858|ref|XP_004140689.1| (PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1


Query: 3  ACVKRIQGDDGGHKHCTGQYFDYWSCIDKC 33
          ACVKRIQGDD GHKHCTGQYFDYWSCIDKC
Sbjct: 30 ACVKRIQGDDSGHKHCTGQYFDYWSCIDKC 59

[Close]

BLAST of Lsi05G001970 vs. NCBI nr
Match: gi|700202422|gb|KGN57555.1| (hypothetical protein Csa_3G212480 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1


Query: 3   ACVKRIQGDDGGHKHCTGQYFDYWSCIDKC 33
           ACVKRIQGDD GHKHCTGQYFDYWSCIDKC
Sbjct: 89  ACVKRIQGDDSGHKHCTGQYFDYWSCIDKC 118

[Close]

BLAST of Lsi05G001970 vs. NCBI nr
Match: gi|659112182|ref|XP_008456103.1| (PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1


Query: 3  ACVKRIQGDDGGHKHCTGQYFDYWSCIDKC 33
          ACVKRIQGDD GHKHCTGQYFDYWSCIDKC
Sbjct: 30 ACVKRIQGDDSGHKHCTGQYFDYWSCIDKC 59

[Close]

BLAST of Lsi05G001970 vs. NCBI nr
Match: gi|674251003|gb|KFK43768.1| (hypothetical protein AALP_AA1G170400 [Arabis alpina])

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-10
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1


Query: 3  ACVKRIQGDDGGHKHCTGQYFDYWSCIDKCGLNNPFLASAVVV 46
          ACVKRIQGDD GHKHCTGQYFDYW CIDKC  ++  L  + V+
Sbjct: 43 ACVKRIQGDDSGHKHCTGQYFDYWHCIDKCVSSSSMLCFSHVL 85

The following BLAST results are available for this feature:

BLAST of Lsi05G001970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
QCR6_SOLTU	6.7e-11	80.00	Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2	[more]

BLAST of Lsi05G001970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067L3J7_JATCU	1.2e-11	81.08	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25188 PE=4 SV=1	[more]
A0A0A0L6I2_CUCSA	8.0e-11	96.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G212480 PE=4 SV=1	[more]
A0A087HNR6_ARAAL	1.4e-10	69.77	Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G170400 PE=4 SV=1	[more]
A0A0D3DPB3_BRAOL	2.3e-10	93.33	Cytochrome b-c1 complex subunit 6 OS=Brassica oleracea var. oleracea PE=3 SV=1	[more]
A0A078IRH2_BRANA	2.3e-10	93.33	BnaA08g31320D protein OS=Brassica napus GN=BnaA08g31320D PE=4 SV=1	[more]

BLAST of Lsi05G001970 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15120.2	1.2e-13	93.33	Ubiquinol-cytochrome C reductase hinge protein	[more]
AT2G01090.1	3.8e-12	83.33	Ubiquinol-cytochrome C reductase hinge protein	[more]

BLAST of Lsi05G001970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|643736731\|gb\|KDP43002.1\|	1.8e-11	81.08	hypothetical protein JCGZ_25188 [Jatropha curcas]	[more]
gi\|449445858\|ref\|XP_004140689.1\|	1.1e-10	96.67	PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis sativus]	[more]
gi\|700202422\|gb\|KGN57555.1\|	1.1e-10	96.67	hypothetical protein Csa_3G212480 [Cucumis sativus]	[more]
gi\|659112182\|ref\|XP_008456103.1\|	1.1e-10	96.67	PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo]	[more]
gi\|674251003\|gb\|KFK43768.1\|	2.0e-10	69.77	hypothetical protein AALP_AA1G170400 [Arabis alpina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008121	ubiquinol-cytochrome-c reductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c

Vocabulary: **INTERPRO**
Term	Definition
IPR023184	Ubol_cytC_Rdtase_hinge_dom
IPR003422	Cyt_b-c1_6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0015992	proton transport
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045275	respiratory chain complex III
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0070469	respiratory chain
cellular_component	GO:0005750	mitochondrial respiratory chain complex III
molecular_function	GO:0008121	ubiquinol-cytochrome-c reductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001970.1	Lsi05G001970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003422	Cytochrome b-c1 complex, subunit 6	PANTHER	PTHR15336	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN	coord: 4..32 score: 1.0
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	GENE3D	G3DSA:1.10.287.20		coord: 3..33 score: 2.
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	PFAM	PF02320	UCR_hinge	coord: 2..32 score: 1.
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	unknown	SSF81531	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 2..33 score: 4.45
None	No IPR available	PANTHER	PTHR15336:SF2	SUBFAMILY NOT NAMED	coord: 4..32 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G001970	Csa3G212480	Cucumber (Chinese Long) v2	culsiB211
Lsi05G001970	CSPI03G18710	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G001970	CmaCh16G003670	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G001970	CmaCh04G005070	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G001970	CmoCh16G003920	Cucurbita moschata (Rifu)	cmolsiB304
Lsi05G001970	CmoCh04G005450	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G001970	MELO3C019495	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G001970	ClCG05G009840	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G001970	MELO3C019495.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G001970	Cla97C05G092230	Watermelon (97103) v2	lsiwmbB329
Lsi05G001970	Bhi01G001240	Wax gourd	lsiwgoB431
Lsi05G001970	Cp4.1LG01g02120	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G001970	Cp4.1LG14g04110	Cucurbita pepo (Zucchini)	cpelsiB177
Lsi05G001970	CsGy3G018560	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G001970	Carg08176	Silver-seed gourd	carlsiB346
Lsi05G001970	Carg11295	Silver-seed gourd	carlsiB595
Lsi05G001970	CsaV3_3G018780	Cucumber (Chinese Long) v3	cuclsiB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G001970	Watermelon (97103) v1	lsiwmB361