Carg11295 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11295
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cytochrome b-c1 complex subunit 6
Location	Cucurbita_argyrosperma_scaffold_025 : 78533 .. 82110 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGAGGCAGTTCAAGGTAAATTGGGATGAAAATGGGGTAATTATATTGCCCTAAATGCTAAATTATTCACTGGTTAACCATAAGTTTAGGCATTCAACAACAACAAATTAACCCCACTTTTACCCGTTCAAAACATTATCCTTTACTAAAATTAATATTTTTGGTCATAATTATATTATTTTAAACATTTTCTTCTTTAAAAATATTATTTTTAAAAAAATAATTACGGTGCATAGAAGAATATAGCTCAATATTATATTAATTTAAAAATAAATGTAAAATTAATTAATATTTTTTTATTTGTAATTTAATTAGGCTCCAAAAGGGCTTTTTGACCCGACCCGAACAAATGTACCGAATCCGAATGCAACCGGCCCGCGAAGCTTCTTGAACCGGGAAAGTGGGGGATTTGTCATATTGCAGTTTCTCAGCTCCGAAACTAAACCTAATCAGAGTTGCTAGTTTCCTCCCAGATTCGTGTTTCAGCTCCAAGGTATGGATTTGGAGTCGAGAGGCTTTCGCCGTTTTTAAATTTTGTTTGTTTTTGAGCTTTATATAATTTTTGTTCACTGTTTCTCTTTTCTGTTTTTGTTTTTTTTTATGATCAGATCCGTGTTTGGTTTTCCTCCATTCGTCGATCGTTTGTTTTGGCATTTATGGGGGCTTTTGATTTCTTATATCGATTTGATTTGTTTCCTTTGAAGTTTTCTTAGAGATCGATGGAGGTTTTTTGTTTTTCTATGTGCGATTATATTATGTCGTTTGTTCTGTCTCTCAGTAGTTGGTTTTCGAGGGGAATTTGTTATGTTTGATTATATGATCTGAATTGTTGTTTTTGATACACATTCAAGTCTCGAATTTTGAAATGGTGTTTCTGTTTCTCTTGTAATGGAATCAAGCCTTACTTAATTTCCCTTACCATAGGCAGTTTGATTCGTGGGTACAAATCATTGGGCTGAAATCAATTGCTTTTCCTTTGGTGAAATTGATGAGACTTTCTGATAGTAGTACCTTCCATTCTGAATGTTTCACATCTGAACCTGAAATCTAATCTTACGTACACAATGATACTAATGTCCCACGTTGGTTGGGGAGGAGAACAAACCACCACTTATAAGAATGTGGAAACCTTCCCCTAGTACACGCGCTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTACTAGCGGTGAGCCTGGGTCGTTACACTTAGAAGATGGAGTTTAGCTCGAGGCTGGTCAATTTAAATTCTTAATGGATCTTTTGTATGCCTTTCCTCAAAAGAATGCTTGAGATAAAGGCATGGACATTTTGAATTTGTGGAATGAAGTTCATGGTTTTTGGTGTCAGCATTTATGTGCAAACTAAAATTTAATTTTAATGTTTTTCAGGTTTTCTTCACTACTCTTTTGCTCCAAGTCAGTACTATTTATTAGCAATGTAAGTACCTTTATTGTTATTATTATTATTTAGGTTTCAGCTTCACCATAAATTATACACTATTTTTTTAGCGTTTTATTTCTTACACGATGAACTTTTTGATTGTCTGCTACGTACTTTAGATTTGTATCCCTGTAGTCAAGTGCTGTTTTGTTAGCGTTTATTGCCTTATTTGGCATTCAGAAATTTCTAATCCCACTCGTTTTTCCCTCGAAAGTAGCCCATAGTGGTGGGAAGAGTTATTAGGGTGGTCTGTGGTGCACATACCTGGACAAATGTTTCTTTGAATCTTGATTGTTGGAACAATCACCATGACAAGTATCATCTCCCTGCTGCTGAAATGAAATCATGAAATATAGAAGTGCTGTGATTTTTGCATATTTTGGGAAGAATTAGTTTGCTGTAGATTTAGTTTCAATGTAAATCAGACATTTAGCAGATGTAAGGTTTTTGGAGATTTATAAGGTTTAATAATCAGTAGGATAGTTACATTCACAAATACCAATGAATAAAGTATGCTGGAGTGGAAATTGAGATCTTCATATGGTTGGAACTTGGAAGCTACTTTTACATGCACATTTCTTTTCCATACTCTGTCTTTGTCTTTCACTGTGTTGAAGATTATTTGTATTGATATCTACGTTTCTTTGTTTCCTCGTATGTAGGGCGGATGAAGAACCTGTTGATCAGAAAAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTACTTGAATATCAGGTACAGGGTGTTAAGTAGAGAAGGATTTAAAAAATAAAACAAAGACAAGCCACTCAAATGCTAAGTAGCACTATTTAAATTCTCTTTTTATTAGTCGTTCCAACATTATATTTCATAATTTCTCTTTCGATTATGCGTCTTATTTTTGCCATTAAGGGTAATAGTAAGAACTTGTTAGTGCAACCTTTTTTTTATTCTTTTGGATGGAAGTCATTTTTATTTTGACGAGCTTACTTACGGTTTCCTTTTGCTGGTTCTTTTTGTATGCTCTTGTATATACTTTCATTAAGAAGCCCTGTTTCTCATCGAGAGGTGTTAGGGCGATCTTGCCCTTGGCAATTATGGTGAAGGATCCTTGGCTTATCATGCTAATCATTTAGGTCACGAAGGCAACAATAGCCCTCAACAAATTGTCTTTTATGAAATGTAGCTCCATTGATCTGTGAATTCAACTCAATATTGATGGCAAATTGGGATATGTTTTTCCTTGAACTTGAGACAACTCACGCTTCACTGATTCTAGTTGATATGATGCTTTGGGGTTCACGTTGACTCGGGTCACTTGTCATCCTTTTATTGTGGTGTTGATGAATCTTAACCAGTCATCAAGTTTTATGCAATCTCTTGTATCTATGGGTGTCAACTGGTGATTGATTGACATATAGGAACAAAAAGGGTCTTAATTTTTTAGTTTGTTTATCACGTCTGAGCAGATTCAAATTAAGGTAAAATGATGGTTATTGTCTTTCGATGTCATAGGCGTGCGTGAAGAGAATCCAAGGGGACGAGAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCATCGACAAATGTGTAAGTAACGTTCGGTTTTTATAGAAATTAGATTACAGAATCAAACGAGCTCGTGCTCGAGCCTTGAACTAACTTCAAAGATGCTGTTCTTGCAGGTTGCACCAAAACTATTTACGAAACTGAAGTAATGGACAATTGTTAGGGATGTGGGGATCCTTTCCTTTTGTGCTTGATTTTTTATGCAACCTGTTTTTGTGGACTTGGTTTTTGCATCTACAAAAAAATGCCAAGGGCTGTGCAATTTTATAAAAATTATGAAGACCTTTAACCATGGTCAATAAGAAAGGATGTTGGATTCACGTTTTGAGCTTGTGAAAACTTCTTCCTTTAATGCTATGATTGCTTTATATAAACATTAGTGATCTAAAACCAGTTGTTTCAGAATTTGCTGTTACTCGGTTTGTCTGATGGCTGTGCATTTTGTGAATAATCTGCCCATTGAGGTTCAGTTTGGGACAAGTAAATTATCACTTTTTGGTCCAAGGCCTGCTTTCTAGTTTACACAGGCGGACGATG

mRNA sequence

ATGTTCGAGGCAGTTCAAGGTTTTCTTCACTACTCTTTTGCTCCAAGTCAGTACTATTTATTAGCAATGGCGGATGAAGAACCTGTTGATCAGAAAAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTACTTGAATATCAGGCGTGCGTGAAGAGAATCCAAGGGGACGAGAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCATCGACAAATGTGTTGCACCAAAACTATTTACGAAACTGAAGTAATGGACAATTGTTAGGGATGTGGGGATCCTTTCCTTTTGTGCTTGATTTTTTATGCAACCTGTTTTTGTGGACTTGGTTTTTGCATCTACAAAAAAATGCCAAGGGCTGTGCAATTTTATAAAAATTATGAAGACCTTTAACCATGGTCAATAAGAAAGGATGTTGGATTCACGTTTTGAGCTTGTGAAAACTTCTTCCTTTAATGCTATGATTGCTTTATATAAACATTAGTGATCTAAAACCAGTTGTTTCAGAATTTGCTGTTACTCGGTTTGTCTGATGGCTGTGCATTTTGTGAATAATCTGCCCATTGAGGTTCAGTTTGGGACAAGTAAATTATCACTTTTTGGTCCAAGGCCTGCTTTCTAGTTTACACAGGCGGACGATG

Coding sequence (CDS)

ATGTTCGAGGCAGTTCAAGGTTTTCTTCACTACTCTTTTGCTCCAAGTCAGTACTATTTATTAGCAATGGCGGATGAAGAACCTGTTGATCAGAAAAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTACTTGAATATCAGGCGTGCGTGAAGAGAATCCAAGGGGACGAGAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCATCGACAAATGTGTTGCACCAAAACTATTTACGAAACTGAAGTAA

Protein sequence

MFEAVQGFLHYSFAPSQYYLLAMADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAPKLFTKLK

Homology

[Close]

BLAST of Carg11295 vs. NCBI nr
Match: XP_022942987.1 (cytochrome b-c1 complex subunit 6-like [Cucurbita moschata])

HSP 1 Score: 180.6 bits (457), Expect = 2.3e-42
Identity = 80/87 (91.95%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 5   VQGFLHYSFAPSQYYLLAMADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGH 64
           +QGFL +SFAPSQ YLLAMADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGD+SGH
Sbjct: 48  LQGFLAFSFAPSQCYLLAMADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGH 107

Query: 65  KHCTGQYFDYWSCIDKCVAPKLFTKLK 92
           KHCTGQYFDYWSC+DKCVAPKLFTK+K
Sbjct: 108 KHCTGQYFDYWSCVDKCVAPKLFTKIK 134

[Close]

BLAST of Carg11295 vs. NCBI nr
Match: XP_022922477.1 (cytochrome b-c1 complex subunit 6 [Cucurbita moschata] >XP_022985141.1 cytochrome b-c1 complex subunit 6-like [Cucurbita maxima] >XP_023551986.1 cytochrome b-c1 complex subunit 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.4 bits (394), Expect = 4.7e-35
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCV 82
          MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCV
Sbjct: 1  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCV 60

Query: 83 APKLFTKLK 92
          APKLFTKLK
Sbjct: 61 APKLFTKLK 69

[Close]

BLAST of Carg11295 vs. NCBI nr
Match: XP_008456103.1 (PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo] >XP_008456104.1 PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 1.0e-34
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCV 82
          MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCIDKCV
Sbjct: 1  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 60

Query: 83 APKLFTKLK 92
          APKLFTKLK
Sbjct: 61 APKLFTKLK 69

[Close]

BLAST of Carg11295 vs. NCBI nr
Match: XP_022983580.1 (cytochrome b-c1 complex subunit 6-like [Cucurbita maxima])

HSP 1 Score: 154.1 bits (388), Expect = 2.3e-34
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCV 82
          MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSC+DKCV
Sbjct: 1  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 60

Query: 83 APKLFTKLK 92
          APKLFTK+K
Sbjct: 61 APKLFTKIK 69

[Close]

BLAST of Carg11295 vs. NCBI nr
Match: XP_004140689.1 (PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis sativus] >XP_011651255.1 PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 5.2e-34
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCV 82
          MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCIDKCV
Sbjct: 1  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 60

Query: 83 APKLFTKLK 92
          APKL TKLK
Sbjct: 61 APKLLTKLK 69

[Close]

BLAST of Carg11295 vs. TAIR10
Match: AT1G15120.2 (Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-29
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 23  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKC 82
           MAD+E VD K+YLEE+CKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYW CIDKC
Sbjct: 68  MADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWQCIDKC 126

[Close]

BLAST of Carg11295 vs. TAIR10
Match: AT2G01090.1 (Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 123.2 bits (308), Expect = 8.0e-29
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCV 82
          M +E+ VDQKRY EE+CKPKCVKPLLEYQACVKRIQ DESGHKHCTGQYFDYW C+DKCV
Sbjct: 1  MPEEDVVDQKRYFEESCKPKCVKPLLEYQACVKRIQDDESGHKHCTGQYFDYWHCVDKCV 60

Query: 83 A 84
          +
Sbjct: 61 S 61

[Close]

BLAST of Carg11295 vs. Swiss-Prot
Match: sp|P48504|QCR6_SOLTU (Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 9.3e-27
Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCV 82
          M+DEE VD K  LE +CKPKCV+ L EYQAC KR++GDESGHKHCTGQYFDYW CIDKCV
Sbjct: 1  MSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRVEGDESGHKHCTGQYFDYWHCIDKCV 60

Query: 83 APKLFTKLK 92
          A KLF  LK
Sbjct: 61 AAKLFDHLK 69

[Close]

BLAST of Carg11295 vs. Swiss-Prot
Match: sp|Q1ZXP3|QCR6_DICDI (Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium discoideum OX=44689 GN=uqcrh PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-07
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 35 LEEACKPKCVKPLLEYQACVKRIQGDESGHK-HCTGQYFDYWSCIDKCVAPKLFTKLK 92
          ++E C   C K    YQAC  R+   E   K +C GQ+ ++  CIDKCV PKLF +LK
Sbjct: 12 IQEGCASGCEKSWSAYQACSGRVAKLEHDEKANCLGQFLEHVQCIDKCVGPKLFAQLK 69

[Close]

BLAST of Carg11295 vs. TrEMBL
Match: tr|A0A1S3C350|A0A1S3C350_CUCME (Cytochrome b-c1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103496141 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.9e-35
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCV 82
          MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCIDKCV
Sbjct: 1  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 60

Query: 83 APKLFTKLK 92
          APKLFTKLK
Sbjct: 61 APKLFTKLK 69

[Close]

BLAST of Carg11295 vs. TrEMBL
Match: tr|M5XBF4|M5XBF4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G560700 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.4e-34
Identity = 66/81 (81.48%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 11  YSFAPSQYYLLAMADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQ 70
           Y       ++  MADEEPVDQK+YLEE+CKPKCVKPLLEYQACVKRIQGDESGHKHCTGQ
Sbjct: 41  YDIVDVGLFVFCMADEEPVDQKKYLEESCKPKCVKPLLEYQACVKRIQGDESGHKHCTGQ 100

Query: 71  YFDYWSCIDKCVAPKLFTKLK 92
           YFDYWSC+DKCVAPKLF KLK
Sbjct: 101 YFDYWSCVDKCVAPKLFPKLK 121

[Close]

BLAST of Carg11295 vs. TrEMBL
Match: tr|A0A0A0L6I2|A0A0A0L6I2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G212480 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.7e-34
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 23  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCV 82
           +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCIDKCV
Sbjct: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 119

Query: 83  APKLFTKLK 92
           APKL TKLK
Sbjct: 120 APKLLTKLK 128

[Close]

BLAST of Carg11295 vs. TrEMBL
Match: tr|A0A2I0J9N8|A0A2I0J9N8_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_026555 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.7e-34
Identity = 69/78 (88.46%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 16  SQYYLLA--MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFD 75
           S Y LLA   ADEEPVDQK+YLEE+CKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFD
Sbjct: 33  SYYCLLADLRADEEPVDQKKYLEESCKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFD 92

Query: 76  YWSCIDKCVAPKLFTKLK 92
           YWSC+DKCVAPKLF KLK
Sbjct: 93  YWSCVDKCVAPKLFVKLK 110

[Close]

BLAST of Carg11295 vs. TrEMBL
Match: tr|B9H7R3|B9H7R3_POPTR (Cytochrome b-c1 complex subunit 6 OS=Populus trichocarpa OX=3694 GN=POPTR_005G191000v3 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.0e-33
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCV 82
          MADEEPVD K+YLEEACKPKCV+PLLEYQACVKRIQGDESGHKHCTGQYFDYWSC+DKCV
Sbjct: 1  MADEEPVDPKKYLEEACKPKCVRPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCVDKCV 60

Query: 83 APKLFTKLK 92
          APKLFTKLK
Sbjct: 61 APKLFTKLK 69

The following BLAST results are available for this feature:

BLAST of Carg11295 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942987.1	2.3e-42	91.95	cytochrome b-c1 complex subunit 6-like [Cucurbita moschata]	[more]
XP_022922477.1	4.7e-35	100.00	cytochrome b-c1 complex subunit 6 [Cucurbita moschata] >XP_022985141.1 cytochrom...	[more]
XP_008456103.1	1.0e-34	98.55	PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo] >XP_008456104.1 PRED...	[more]
XP_022983580.1	2.3e-34	95.65	cytochrome b-c1 complex subunit 6-like [Cucurbita maxima]	[more]
XP_004140689.1	5.2e-34	97.10	PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis sativus] >XP_011651255.1 P...	[more]

BLAST of Carg11295 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15120.2	2.7e-29	88.14	Ubiquinol-cytochrome C reductase hinge protein	[more]
AT2G01090.1	8.0e-29	83.61	Ubiquinol-cytochrome C reductase hinge protein	[more]

BLAST of Carg11295 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P48504\|QCR6_SOLTU	9.3e-27	75.36	Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum OX=4113 PE=1 SV=2	[more]
sp\|Q1ZXP3\|QCR6_DICDI	1.7e-07	44.83	Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium discoideum OX=44689 ...	[more]

BLAST of Carg11295 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C350\|A0A1S3C350_CUCME	6.9e-35	98.55	Cytochrome b-c1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103496141 PE=3 S...	[more]
tr\|M5XBF4\|M5XBF4_PRUPE	3.4e-34	81.48	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G560700 PE=4 SV=1	[more]
tr\|A0A0A0L6I2\|A0A0A0L6I2_CUCSA	7.7e-34	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G212480 PE=4 SV=1	[more]
tr\|A0A2I0J9N8\|A0A2I0J9N8_PUNGR	7.7e-34	88.46	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_026555 PE=4 SV=1	[more]
tr\|B9H7R3\|B9H7R3_POPTR	1.0e-33	94.20	Cytochrome b-c1 complex subunit 6 OS=Populus trichocarpa OX=3694 GN=POPTR_005G19...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c

Vocabulary: **Molecular Function**
Term	Definition
GO:0008121	ubiquinol-cytochrome-c reductase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR003422	Cyt_b-c1_6
IPR036811	Ubol_cytC_Rdtase_hinge_dom_sf
IPR023184	Ubol_cytC_Rdtase_hinge_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
biological_process	GO:0015992	proton transport
cellular_component	GO:0045275	respiratory chain complex III
molecular_function	GO:0008121	ubiquinol-cytochrome-c reductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11295-RA	Carg11295-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	PFAM	PF02320	UCR_hinge	coord: 30..91 e-value: 4.4E-23 score: 81.2
IPR036811	Ubiquinol-cytochrome C reductase hinge domain superfamily	GENE3D	G3DSA:1.10.287.20		coord: 22..91 e-value: 3.6E-23 score: 83.4
IPR036811	Ubiquinol-cytochrome C reductase hinge domain superfamily	SUPERFAMILY	SSF81531	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 23..91
IPR003422	Cytochrome b-c1 complex, subunit 6	PIRSF	PIRSF000019	Bc1_11K	coord: 13..91 e-value: 2.1E-36 score: 121.8
IPR003422	Cytochrome b-c1 complex, subunit 6	PANTHER	PTHR15336	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN	coord: 23..91
None	No IPR available	PANTHER	PTHR15336:SF2	SUBFAMILY NOT NAMED	coord: 23..91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11295	Csa3G212480	Cucumber (Chinese Long) v2	carcuB0675
Carg11295	MELO3C019495	Melon (DHL92) v3.5.1	carmeB0651
Carg11295	ClCG05G009840	Watermelon (Charleston Gray)	carwcgB0636
Carg11295	CSPI03G18710	Wild cucumber (PI 183967)	carcpiB0685
Carg11295	CmaCh04G005070	Cucurbita maxima (Rimu)	carcmaB0925
Carg11295	CmaCh16G003670	Cucurbita maxima (Rimu)	carcmaB0924
Carg11295	CmoCh04G005450	Cucurbita moschata (Rifu)	carcmoB0899
Carg11295	CmoCh16G003920	Cucurbita moschata (Rifu)	carcmoB0898
Carg11295	Lsi05G001970	Bottle gourd (USVL1VR-Ls)	carlsiB595
Carg11295	Cp4.1LG01g02120	Cucurbita pepo (Zucchini)	carcpeB0927
Carg11295	Cp4.1LG14g04110	Cucurbita pepo (Zucchini)	carcpeB0926
Carg11295	CsGy3G018560	Cucumber (Gy14) v2	carcgybB0650
Carg11295	MELO3C019495.2	Melon (DHL92) v3.6.1	carmedB0661
Carg11295	CsaV3_3G018780	Cucumber (Chinese Long) v3	carcucB0687
Carg11295	Cla97C05G092230	Watermelon (97103) v2	carwmbB0681
Carg11295	Bhi01G001240	Wax gourd	carwgoB0771

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11295	Carg08176	Silver-seed gourd	carcarB403

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11295	Watermelon (97103) v1	carwmB0655