Carg08176 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08176
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cytochrome b-c1 complex subunit 6
Location	Cucurbita_argyrosperma_scaffold_050 : 1133802 .. 1137615 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTGATATGGCAAACACTGCATTGATGCTCGCTTCTAATCATCTGTAGCTTTGGTCTTTATTTGTCTTGATATCCAGTTCGACGCTGTTTTTCAAGCATATGACGGTCTAGATAACTTCTTGTAAAGCCAGTCATTTCAGTGTGGTAACCATTCCGTTTTTAAAAGACGTGCTTGTTTGCATGTCGTTTTTGTACGATGTGATGTATTTCTTTCCCAATAGTAAAAACTTAAGTGATTTGTTTAGAGTATATAATAATGATTTTAAGACTAAAAATGGTACCCGACCCGACCCGAAATGGATCCGGCCCGAGAGCAAAGGAACCGGAAAGTGGAAGCTTTGTCAAATTGCAATTTCTCGACTTCGAAACTAAACCTAAACAGAGTTACTGATTCTCTCCGAGGTTCGTGCTTCAGCTCCAAGGTATGAATTCGATGAGGAGAAACACTCCGCTCGTTTGAGAATTTTATGTGTTTTTGAGCTTTAGATGAATTTTGTATTCAGTTTATCTTTTCTGTTTTCGATTTTTATTACCGGATCCGTGTTTAATTTTCCTTGATTGGTCGATCGTCTGTTTTCGCGTTTCTGGGCGTGTTTTTATCTTTTATCAATTGGATTCTTTTACTTTGAAGTTTCGACATCGATGGAGGATTTTTTTTGACGTGTATTTATACTACGTCGTTAGTAGTTGGTATCTGAGGGGAAAAAATTTGTGTTTGTTTGTATGGTCCAACTCATCGTTTCTGATAGATATTGGAGTCTTGAATGTTGAATTGGATTTTTCCGTTTTTCTTAGAATGGAATTAAGTTTAACGAGTACCATTACCTACCTCATAGGCAGTTTAATTTGTGGGTACGTGTCATTGAACTGAAATCGTTTGATTTTCCTTTGGTGAAAATGACGGAGATTCTCTTATTGTACCTTCGTTTCTGAATGCGTAACATCTGAACCTGAAATCTTATCTTAAGCGAATGATACTCTTAAAAGCTTGCGTTTGGCCTGGTGGCCGGTCAATTTCAAATTTTAATGTATCTTGTGTCTGCCATTACTCAAAAGAATGCTTGAGATAGGTTGATGGACATTTTGAATCCATGGAAAAAAGTTAATTGATTTTGATGCCTGCATTTATGCACAAACAACTAATGACAATTAGCAACTATATTCTTCTTTCTCTTTTTCCGTATTGATGCTTATTTTTTATGATAATTCAAATTTGAATGTTTTCAGGTTTTCTAGCCTTCTCTTTTGCTCCAAGTCAGTGTTATTTATTAGCAATGTGAGTATTTTTTTTTTAGCTTCACCATTTATTATACATTCTCCTTTTACCCTTTTATTTCTTACACGGACGTTTTGATTGTCTGCTACATTGCTTTAGAGTTATAGCCCTGTAGTCCAGTGTTGTTTCGTTAGCATTTATTGCATTCTTATATTGCATTCATAGATTTCCAAACCATTATTTCTTCCCTCAAAAGTAGCTCATAGTGGTAAGAGGAAGAGTTATTGTTGGGAGTGGGGGGACTGTTGAGCACATACTTAGACAAATTTTTCTCTGAATCTTGATTTTTTGAACAACCACGATGACAAATATCATCTCCCTGCTGCTTCAATTGAAACTATGAAATATAGAAGTTCTGTGAATTTTACTTATTTTGGGAAGAATGAGGTTGCTGTAGATTTAGTTTCAATGTAAATCAGATGTGTTAACACTTGGAAGATGTTGCATTTTACCGGCTTAGTGATCTGATCTATATTTATGATGATTTATAAGGTTTAATAATGAGTAGGATAATTACATTCTGAATACAAATGATTAAAGCATGTCAGAATGGAAATTGAATTACTTCATATGGTTTGAATCTACTTGTACATGCATGTCTTCTTCATACTCTGTGTCTTTAACTTTCATAATGTTGAAGATTATTTGTATTGATGTTAACTGATCTACATTTCCTTGTTTCTTGGTAATAGGGCAGATGAAGAACCCGTCGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTACTTGAATACCAGGTATGTAGTGTTTTATTGGTCTTTGTTGTGGGGGAGTAATAAGTTGAATATGTGTTTTCTTCAGTTATTTGACTTGTATTCATCATTCTCTGTTTTTTTTTTCTTCATGTCTAAACTTTAGAAACCTGGTTTCATGGATGGTTATATTTCTATTCTCATTAGAAATAATCAGTAGGTTGAAGATTGTGCATCTCTCCATTGAGTACATCCATTTATAAACTGTTAATTTCCTTGTTAACTTTGAACTTTCTTCGTGACGCATCAATTAGTATTCAGTGAACTGTTCCTTCAAAAGAAAGGCCAGCTTGAAGGGAGTGACATTTGTCAGAAAATTATAGTTTAAAAAGCCGTGAAGGGTGTTGGAGTTGTGAGGTGGGTGGGTTTCGTTGGTTGAAAATAATAAAATATACAAGTGGCCACCAATCACTTAAGCTTATGGATCTGTTTGGAGAATGACCAAGGAAAGTTACAAGGGTTAATTTCAAATTTTGGTACTAGTTTTATCATTTCTCTAATGAAAGTCCAGGTTCTCATAAAAAGTTGTTAGCCCAACCTTGTGGGGGAAACGCAATTGTCCTTGTGCAATTATGGTGAAAGATCCATGCCCTCTCATGCTAATCATTTAGGTCATGGAGGCAACAGTAGCGTCCTCAACAAGTTTACTTTTACAAAATGTAGCTCCTTTGAGTTGTGAATCAACTCAATGTTGAGGACGAAACTGAAGATCTATTTTCTCCAAATCTCAGACATTTATGATTCACTGATTCTAGTTGATAAGCTTGATATCATGCTTTGGGCTTCACGTTGACTCCATTACCAGTCGTTCACTCATTGTGAATCTGCTTCCCCGTGGATACCGGTCCCCACCCAATTCGAAGACATATATATTGGGATGTGCATATGATGTGTTTTTATAAAAATTCACAAATTTATATGTTCTCTTCTATATGTGGGTTTCAACTTATGACACTCCTTGTTGATGTATAGGAATGAGTAGGGGGTCTTAACTTGGTACTTTATTCATCACGTCTGAGCAGAATCAAATTGTAGAATTGGTATGAAGATAAGGTAAAATGATGGCTATTGTGTTTCTATGTGATAGGCATGCGTGAAGAGAATCCAAGGGGATGACAGTGGCCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCGTCGACAAATGTGTGAGTATATCTTTGGTTGTTGTAGGAGGAAGTAGATTAGATTGCAGAAGAAGTTGTCCATAAACAAGTTGAGTATAGGCAAGCTTGATCTAACTAACTTCAAAGACTCTTTTTGTTGCAGGTTGCACCAAAACTATTTACGAAAATAAAGTAAATGGAGAGTTAGGCATGTGGAGGTGTTCCTATCCTTTTGGTTGCAGCAGCATTTTTCTGATTTTTTATGCAATGCCTTTTTGTGTACTTCATCTTTGCATCTACAAAAAATGCCAAGAACTTTGCAAAAAACTATGAAGACCTTAGCCATCATCAATAAGAAAGGACGTTGGATTGTATGAACACACTTCTTCCCTTAATTTCATTTTATGATTGCTTTATTAACATTAAATGGCTGTGCTGTTTATCCCACATTGAATGCTGTTTAGCAAATGGCTGTGCTGTTTGATGTTTTCAAATAATTGAATGATCAGTAGTATGATCCTATTTCTGTTGCTGGTTCCAAGATTTGTTCCTCGATCGAAGAGCGAGGTAGTTGTAATGCGCTTTAATCAGTTGATTTATGTTTTTTAGA

mRNA sequence

TCTTGATATGGCAAACACTGCATTGATGCTCGCTTCTAATCATCTGTAGCTTTGGTCTTTATTTGTCTTGATATCCAGTTCGACGCTGTTTTTCAAGCATATGACGGTCTAGATAACTTCTTGTAAAGCCAGTCATTTCAGTGTGGTAACCATTCCGTTTTTAAAAGACGTGCTTGTTTGCATGTCGTTTTTGTACGATGTGATGTATTTCTTTCCCAATAGTAAAAACTTAAGTGATTTGTTTAGAGTATATAATAATGATTTTAAGACTAAAAATGGTACCCGACCCGACCCGAAATGGATCCGGCCCGAGAGCAAAGGAACCGGAAAGTGGAAGCTTTGTCAAATTGCAATTTCTCGACTTCGAAACTAAACCTAAACAGAGTTACTGATTCTCTCCGAGGTTCGTGCTTCAGCTCCAAGAATGGAATTAAGTTTAACGAGTACCATTACCTACCTCATAGGCAGTTTAATTTGGCAGATGAAGAACCCGTCGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTACTTGAATACCAGGCATGCGTGAAGAGAATCCAAGGGGATGACAGTGGCCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCGTCGACAAATGTGTTGCACCAAAACTATTTACGAAAATAAAGTAAATGGAGAGTTAGGCATGTGGAGGTGTTCCTATCCTTTTGGTTGCAGCAGCATTTTTCTGATTTTTTATGCAATGCCTTTTTGTGTACTTCATCTTTGCATCTACAAAAAATGCCAAGAACTTTGCAAAAAACTATGAAGACCTTAGCCATCATCAATAAGAAAGGACGTTGGATTGTATGAACACACTTCTTCCCTTAATTTCATTTTATGATTGCTTTATTAACATTAAATGGCTGTGCTGTTTATCCCACATTGAATGCTGTTTAGCAAATGGCTGTGCTGTTTGATGTTTTCAAATAATTGAATGATCAGTAGTATGATCCTATTTCTGTTGCTGGTTCCAAGATTTGTTCCTCGATCGAAGAGCGAGGTAGTTGTAATGCGCTTTAATCAGTTGATTTATGTTTTTTAGA

Coding sequence (CDS)

ATGGATCCGGCCCGAGAGCAAAGGAACCGGAAAGTGGAAGCTTTGTCAAATTGCAATTTCTCGACTTCGAAACTAAACCTAAACAGAGTTACTGATTCTCTCCGAGGTTCGTGCTTCAGCTCCAAGAATGGAATTAAGTTTAACGAGTACCATTACCTACCTCATAGGCAGTTTAATTTGGCAGATGAAGAACCCGTCGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTACTTGAATACCAGGCATGCGTGAAGAGAATCCAAGGGGATGACAGTGGCCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCGTCGACAAATGTGTTGCACCAAAACTATTTACGAAAATAAAGTAA

Protein sequence

MDPAREQRNRKVEALSNCNFSTSKLNLNRVTDSLRGSCFSSKNGIKFNEYHYLPHRQFNLADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK

Homology

[Close]

BLAST of Carg08176 vs. NCBI nr
Match: XP_022942987.1 (cytochrome b-c1 complex subunit 6-like [Cucurbita moschata])

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 119
           +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV
Sbjct: 66  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 125

Query: 120 APKLFTKIK 129
           APKLFTKIK
Sbjct: 126 APKLFTKIK 134

[Close]

BLAST of Carg08176 vs. NCBI nr
Match: XP_022983580.1 (cytochrome b-c1 complex subunit 6-like [Cucurbita maxima])

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 119
           +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV
Sbjct: 1   MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 60

Query: 120 APKLFTKIK 129
           APKLFTKIK
Sbjct: 61  APKLFTKIK 69

[Close]

BLAST of Carg08176 vs. NCBI nr
Match: XP_008456103.1 (PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo] >XP_008456104.1 PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 2.5e-34
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 119
           +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCV
Sbjct: 1   MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 60

Query: 120 APKLFTKIK 129
           APKLFTK+K
Sbjct: 61  APKLFTKLK 69

[Close]

BLAST of Carg08176 vs. NCBI nr
Match: KGN57555.1 (hypothetical protein Csa_3G212480 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 7.3e-34
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 119
           LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCV
Sbjct: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 119

Query: 120 APKLFTKIK 129
           APKL TK+K
Sbjct: 120 APKLLTKLK 128

[Close]

BLAST of Carg08176 vs. NCBI nr
Match: XP_022922477.1 (cytochrome b-c1 complex subunit 6 [Cucurbita moschata] >XP_022985141.1 cytochrome b-c1 complex subunit 6-like [Cucurbita maxima] >XP_023551986.1 cytochrome b-c1 complex subunit 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.9 bits (385), Expect = 7.3e-34
Identity = 65/69 (94.20%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 119
           +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSC+DKCV
Sbjct: 1   MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCV 60

Query: 120 APKLFTKIK 129
           APKLFTK+K
Sbjct: 61  APKLFTKLK 69

[Close]

BLAST of Carg08176 vs. TAIR10
Match: AT1G15120.2 (Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-30
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 39  FSSKNGIKFNEYHYLPHRQFNLADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDD 98
           F S++ +  + + +     FN+AD+E VD K+YLEE+CKPKCVKPLLEYQACVKRIQGDD
Sbjct: 49  FESRSPLSISVFSF--QLTFNMADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDD 108

Query: 99  SGHKHCTGQYFDYWSCVDKC 119
           SGHKHCTGQYFDYW C+DKC
Sbjct: 109 SGHKHCTGQYFDYWQCIDKC 126

[Close]

BLAST of Carg08176 vs. TAIR10
Match: AT2G01090.1 (Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 121.3 bits (303), Expect = 4.3e-28
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 119
           + +E+ VDQKRY EE+CKPKCVKPLLEYQACVKRIQ D+SGHKHCTGQYFDYW CVDKCV
Sbjct: 1   MPEEDVVDQKRYFEESCKPKCVKPLLEYQACVKRIQDDESGHKHCTGQYFDYWHCVDKCV 60

Query: 120 A 121
           +
Sbjct: 61  S 61

[Close]

BLAST of Carg08176 vs. Swiss-Prot
Match: sp|P48504|QCR6_SOLTU (Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-25
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 119
           ++DEE VD K  LE +CKPKCV+ L EYQAC KR++GD+SGHKHCTGQYFDYW C+DKCV
Sbjct: 1   MSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRVEGDESGHKHCTGQYFDYWHCIDKCV 60

Query: 120 APKLFTKIK 129
           A KLF  +K
Sbjct: 61  AAKLFDHLK 69

[Close]

BLAST of Carg08176 vs. Swiss-Prot
Match: sp|Q1ZXP3|QCR6_DICDI (Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium discoideum OX=44689 GN=uqcrh PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.9e-07
Identity = 23/58 (39.66%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 72  LEEACKPKCVKPLLEYQACVKRIQGDDSGHK-HCTGQYFDYWSCVDKCVAPKLFTKIK 129
           ++E C   C K    YQAC  R+   +   K +C GQ+ ++  C+DKCV PKLF ++K
Sbjct: 12  IQEGCASGCEKSWSAYQACSGRVAKLEHDEKANCLGQFLEHVQCIDKCVGPKLFAQLK 69

[Close]

BLAST of Carg08176 vs. TrEMBL
Match: tr|A0A1S3C350|A0A1S3C350_CUCME (Cytochrome b-c1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103496141 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.7e-34
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 119
           +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCV
Sbjct: 1   MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 60

Query: 120 APKLFTKIK 129
           APKLFTK+K
Sbjct: 61  APKLFTKLK 69

[Close]

BLAST of Carg08176 vs. TrEMBL
Match: tr|A0A0A0L6I2|A0A0A0L6I2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G212480 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.8e-34
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 119
           LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCV
Sbjct: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 119

Query: 120 APKLFTKIK 129
           APKL TK+K
Sbjct: 120 APKLLTKLK 128

[Close]

BLAST of Carg08176 vs. TrEMBL
Match: tr|M5XBF4|M5XBF4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G560700 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.1e-33
Identity = 64/71 (90.14%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 58  FNLADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDK 117
           F +ADEEPVDQK+YLEE+CKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCVDK
Sbjct: 51  FCMADEEPVDQKKYLEESCKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCVDK 110

Query: 118 CVAPKLFTKIK 129
           CVAPKLF K+K
Sbjct: 111 CVAPKLFPKLK 121

[Close]

BLAST of Carg08176 vs. TrEMBL
Match: tr|B9H7R3|B9H7R3_POPTR (Cytochrome b-c1 complex subunit 6 OS=Populus trichocarpa OX=3694 GN=POPTR_005G191000v3 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.1e-33
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 119
           +ADEEPVD K+YLEEACKPKCV+PLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCVDKCV
Sbjct: 1   MADEEPVDPKKYLEEACKPKCVRPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCVDKCV 60

Query: 120 APKLFTKIK 129
           APKLFTK+K
Sbjct: 61  APKLFTKLK 69

[Close]

BLAST of Carg08176 vs. TrEMBL
Match: tr|A0A1U8A799|A0A1U8A799_NELNU (Cytochrome b-c1 complex subunit 6 OS=Nelumbo nucifera OX=4432 GN=LOC104599876 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-32
Identity = 62/69 (89.86%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 119
           +ADEEPVDQK+Y EE+CKPKCVKPLLEYQACVKRIQGD++GHKHCTGQYFDYWSCVDKCV
Sbjct: 1   MADEEPVDQKKYFEESCKPKCVKPLLEYQACVKRIQGDETGHKHCTGQYFDYWSCVDKCV 60

Query: 120 APKLFTKIK 129
           APKLFTK+K
Sbjct: 61  APKLFTKLK 69

The following BLAST results are available for this feature:

BLAST of Carg08176 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942987.1	1.1e-34	98.55	cytochrome b-c1 complex subunit 6-like [Cucurbita moschata]	[more]
XP_022983580.1	1.1e-34	98.55	cytochrome b-c1 complex subunit 6-like [Cucurbita maxima]	[more]
XP_008456103.1	2.5e-34	95.65	PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo] >XP_008456104.1 PRED...	[more]
KGN57555.1	7.3e-34	95.65	hypothetical protein Csa_3G212480 [Cucumis sativus]	[more]
XP_022922477.1	7.3e-34	94.20	cytochrome b-c1 complex subunit 6 [Cucurbita moschata] >XP_022985141.1 cytochrom...	[more]

BLAST of Carg08176 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15120.2	2.0e-30	68.75	Ubiquinol-cytochrome C reductase hinge protein	[more]
AT2G01090.1	4.3e-28	81.97	Ubiquinol-cytochrome C reductase hinge protein	[more]

BLAST of Carg08176 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P48504\|QCR6_SOLTU	1.5e-25	69.57	Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum OX=4113 PE=1 SV=2	[more]
sp\|Q1ZXP3\|QCR6_DICDI	8.9e-07	39.66	Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium discoideum OX=44689 ...	[more]

BLAST of Carg08176 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C350\|A0A1S3C350_CUCME	1.7e-34	95.65	Cytochrome b-c1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103496141 PE=3 S...	[more]
tr\|A0A0A0L6I2\|A0A0A0L6I2_CUCSA	4.8e-34	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G212480 PE=4 SV=1	[more]
tr\|M5XBF4\|M5XBF4_PRUPE	4.1e-33	90.14	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G560700 PE=4 SV=1	[more]
tr\|B9H7R3\|B9H7R3_POPTR	9.1e-33	91.30	Cytochrome b-c1 complex subunit 6 OS=Populus trichocarpa OX=3694 GN=POPTR_005G19...	[more]
tr\|A0A1U8A799\|A0A1U8A799_NELNU	1.2e-32	89.86	Cytochrome b-c1 complex subunit 6 OS=Nelumbo nucifera OX=4432 GN=LOC104599876 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c

Vocabulary: **Molecular Function**
Term	Definition
GO:0008121	ubiquinol-cytochrome-c reductase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR023184	Ubol_cytC_Rdtase_hinge_dom
IPR003422	Cyt_b-c1_6
IPR036811	Ubol_cytC_Rdtase_hinge_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
biological_process	GO:0015992	proton transport
cellular_component	GO:0045275	respiratory chain complex III
molecular_function	GO:0008121	ubiquinol-cytochrome-c reductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08176-RA	Carg08176-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036811	Ubiquinol-cytochrome C reductase hinge domain superfamily	GENE3D	G3DSA:1.10.287.20		coord: 59..128 e-value: 2.1E-22 score: 81.0
IPR036811	Ubiquinol-cytochrome C reductase hinge domain superfamily	SUPERFAMILY	SSF81531	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 60..128
IPR003422	Cytochrome b-c1 complex, subunit 6	PIRSF	PIRSF000019	Bc1_11K	coord: 48..128 e-value: 2.3E-34 score: 115.3
IPR003422	Cytochrome b-c1 complex, subunit 6	PANTHER	PTHR15336	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN	coord: 61..128
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	PFAM	PF02320	UCR_hinge	coord: 67..128 e-value: 6.3E-22 score: 77.5
None	No IPR available	PANTHER	PTHR15336:SF2	SUBFAMILY NOT NAMED	coord: 61..128

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08176	Csa3G212480	Cucumber (Chinese Long) v2	carcuB0400
Carg08176	MELO3C019495	Melon (DHL92) v3.5.1	carmeB0380
Carg08176	ClCG05G009840	Watermelon (Charleston Gray)	carwcgB0370
Carg08176	CSPI03G18710	Wild cucumber (PI 183967)	carcpiB0405
Carg08176	CmaCh04G005070	Cucurbita maxima (Rimu)	carcmaB0529
Carg08176	CmaCh16G003670	Cucurbita maxima (Rimu)	carcmaB0526
Carg08176	CmoCh04G005450	Cucurbita moschata (Rifu)	carcmoB0514
Carg08176	CmoCh16G003920	Cucurbita moschata (Rifu)	carcmoB0509
Carg08176	Lsi05G001970	Bottle gourd (USVL1VR-Ls)	carlsiB346
Carg08176	Cp4.1LG01g02120	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08176	Cp4.1LG14g04110	Cucurbita pepo (Zucchini)	carcpeB0523
Carg08176	CsGy3G018560	Cucumber (Gy14) v2	carcgybB0380
Carg08176	MELO3C019495.2	Melon (DHL92) v3.6.1	carmedB0384
Carg08176	CsaV3_3G018780	Cucumber (Chinese Long) v3	carcucB0403
Carg08176	Cla97C05G092230	Watermelon (97103) v2	carwmbB0396
Carg08176	Bhi01G001240	Wax gourd	carwgoB0459

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08176	Carg11295	Silver-seed gourd	carcarB403

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08176	Melon (DHL92) v3.5.1	carmeB0379
Carg08176	Watermelon (Charleston Gray)	carwcgB0369
Carg08176	Watermelon (97103) v1	carwmB0370
Carg08176	Watermelon (97103) v1	carwmB0371
Carg08176	Watermelon (97103) v2	carwmbB0395
Carg08176	Wax gourd	carwgoB0458