CmoCh16G003920 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G003920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cytochrome b-c1 complex subunit 6 (Complex III subunit 6) (Mitochondrial hinge protein)
Location	Cmo_Chr16 : 1811756 .. 1815334 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGAGGCAGTTGAAGGTGAATGAGGATGAAAATGGGGTAATTATATTGCCCTACATGGTAAATTATTCACTGGTTAACCGTAAGTTTAGGCATTCAACAACAACAAATTAACCCCACTTTTACCCGTTCAAAACATTATCCTTTACTAAAATTACTATTTTTGGTCATAATTATATTATTTTAAACATTTTCTTTTTTAAAAATATTATTTTTTAAAAATAATTATATTAATTTAAAAATAAATCTAAAATTAATTAATATTTTCATTTTAATTTAAAATTTAGATTCTTATAAAAATTAATATTTTTCTTTTACCATTAATAGACATTTTTAATTTGTAATTTAATTAGGCTCCAAAAGGGATTTTTGACCCGACCCGAACAAATGTACCGAATCCGAATGCAACCGGCCCGCGAAGCTTCTTGAACCGGGAAAGTGGGGGATTTGTCATATTGCAGTTTCTCAGCTCCGAAACTAAACCTAATCAGAGTTGCTAGTTTCCTCCCAGATTCGTGTTTCAGCTCCAAGGTATGGATTTGGAGTCGAGAGGCTTTCGCCGTTTTTAAATTTTGTTTGTTTTTGAGCTTTATATAATTTTTGTTCCCTGTTTCTCTTTTCTCTTTTTGTTTTTTTTATGATCAGATCCGTGTTTGGTTTTCCTCCATTCGTCGATCGTTTGTTTTGGCATTTATGGGGGCTTTTGATTTCTTATATCGATTTGATTTGTTTCCTTTGAAGTTTTCTTAGAGATCAATGAAGGTTTTTTGTTTTTCTATGTGCGATTATATTATTATGTCGTTTGTTCTGTCTCTCAGTAGTTGGTTTTCGAGGGGAATTTGTTATGTTTGATTATATGATCTGAATTGTTGTTTTTGATACACATTCAAGTCTCGAATTTTGAAATGGTGTTTCCGTTTCTCTTGTAATGGAATCAAGATTAACGAGTATCATTAGATTACGTACCTTACTTAATTTCCCTTACCATAGGCAGTTCGATTCGTGGGTACAAATCATTGGGCTGAAATCAATTGCTTTTCCTTTGGTGAAATTGATGAGACTTTCTGATAGTAGTACCTTCCATTCTGAATGTTTCACATCTGAACCTGAAATCTAATCTTACGTACACAATGATACTAATGTCCCACGTTGGTTGGGGAGGAGAACAAACCACCACTTATAAGAATGTAGAAACCTTCCCCTAGTAGACGCGCTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCCTGGGTCGTTACACTTAGATGATGGAGTTTAGCTCGAGGCTGGTCAATTTAAATTCTTAATGGATCTTTTGTATGCCTTTCCTCAAAAGAATGCTTGAGATAAAGGCATCGACATTTTGAATTTGTGGAATGAAGTTCATGGTTTTTGGTGTCAGCATTTATGTGCAAACTAAAATTTAATTTTAATGTTTTTCAGGTTTTCTTCACTACTCTTTTGCTCCAAGTCAGTACTATTTATTAGCAATGTAAGTACCTTTATTGTTATTATTATTATTTAGGTTTCAGCTTCACCATAAATTATACACTATTTTTTGAGCGTTTTATTTCTTACACGATGAACTTTTTGATTGTCTGCTACGTACTTTAGATTTGTATCCCTGTAGTCAAGTGCTGTTTTGTTAGCGTTTATTGCCTTATTTGGCATTCAGAAATTTTTAATCCCACTCGTTTTTCCCTCGAAAGTAGCCCATAGTGGTGGGAAGAGTTATTAGGGTGGACTGTGGTGTACATACCTGGACAAATGTTTCTTTGAATCTTGATTGTTGGAACAATCACCATGACAAGTATCAGCTCCCTGCTGCTGAAATGAAATCATGAAATATAGAAGTGCTGTGATTTTTGCATATTTTGGGAAGAATTAGTTTGCTGTAGATTTAGTTTCAATGTAAATCAGACATTTAGCAGATGTAAGGTTTTTGGAGATTTGTAAGGTTTAATAATCAGTAGGATAGTTACATTCACAAATACCAACGAATAAAGTATGCTGGAGTGGAAATTGAGATCTTCATATGGTTGGAACTTGGAAGCTACTTTTACATGCATTTCTTTTCCATACTCCGTCTTTGTCTTTCATTGTGTTGAAGATTATTTGTATTGATATCTACGTTTCTTTGTTTCCTCGTATGTAGGGCGGATGAAGAACCTGTTGATCAGAAAAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTACTTGAATATCAGGTACAGGGTGTTAAGTAGAGAAGGATTTAAAAAATAACACAAAGACAAGCCACTCAAATACTAAGTAGCACTATTTAAATTCTCTTTTTATTAGTCGTTCCAACATTATATTTCATAATTTCTCTTTCGATTATGCGTCTTATTTTTGCCGTTAAGGGTAATAGTACGAACTTGTTAGTGCAACCTTTTTTTTATTCTTTTGGATGGAAGTCATTTTTATTTTGACGAGCTTACTTTCGGTTTCCTTTTGCTGGTTTTTTTTGTATGCTCTTGTATATACTTTCATTAAGAAGCCCTGTTTGTCATCCAGAGGTGTTAGGGCGATCTTGCCCTTGGCAATTATGGTGAAAGATCCTTGGCTTATCATGTTAATCATTTAGGTCACGAAGGCAACAATAGCCCTCAACAAATTGTCTTTTATGAAATGTAGCTCCATTGATCTGTGAATTCAACTCAATATTGATGGCAAATTGGGATATGTTTTTCCTTGAACTTGAGACAACTCACGTTTCACTGATTCTAGTTGATATCATGCTTTGGGGTTCACGTTGACTCGGGTCACTTGTCGTCCTTTTATTGTGGTGTTGATGAATCTTAACCAGTCATCAAGTTTTATGCAATCTCTTATATCTATGGGTGTCAACTGGTGATTGATTGACATATAGGAACAAAAAGGGTCTTAATTTTTTAGTTTGTTTATCACGTCTGAGCAGATTCAAATTAAGGTAAAATGATGGTTATTGTCTTTCGATGTCATAGGCGTGCGTGAAGAGAATCCAAGGGGACGAGAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCATCGACAAATGTGTAAGTAACGTTCGGTTTTTATAGAAATTAGATTACAGAATCAAACGAGCTCGTGCTCGAGCCTTGAACTAACTTCAAAGATGCTGTTCTTGCAGGTTGCACCAAAACTATTTACGAAACTGAAGTAATGGACAATTGTTAGGGATGTGGGGATCCTTTCCTTTTGTGCTTGATTTTTTATGCAACCTGTTTTTGTGGACTTGGTTTTTGCATCTACAAAAAATGCCAAGGGCTGTGCAATTTTATAAAAATTATGAAGACCTTTAACCATGGTCAATAAGAAAGGATGTTGGATTCACGTTTTGAGCTTGTGAAAACTTCTTCCTTTAAATCTATGATTGCTTTATATAAACATTAGTGATCTAAAACCAGTAGTTTCAGAATTTGCTGTTACTCGGTTTGTCTGATGGCTGTGCATTTTGTGAATCATCTGCCCATTGAGATTCAGTTTGGGAC

mRNA sequence

ATGTTCGAGGCAGTTGAAGGTTTTCTTCACTACTCTTTTGCTCCAAGTCAGTACTATTTATTAGCAATGGCGGATGAAGAACCTGTTGATCAGAAAAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTACTTGAATATCAGGTACAGGGTGCGTGCGTGAAGAGAATCCAAGGGGACGAGAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCATCGACAAATGTGTTGCACCAAAACTATTTACGAAACTGAAGTAATGGACAATTGTTAGGGATGTGGGGATCCTTTCCTTTTGTGCTTGATTTTTTATGCAACCTGTTTTTGTGGACTTGGTTTTTGCATCTACAAAAAATGCCAAGGGCTGTGCAATTTTATAAAAATTATGAAGACCTTTAACCATGGTCAATAAGAAAGGATGTTGGATTCACGTTTTGAGCTTGTGAAAACTTCTTCCTTTAAATCTATGATTGCTTTATATAAACATTAGTGATCTAAAACCAGTAGTTTCAGAATTTGCTGTTACTCGGTTTGTCTGATGGCTGTGCATTTTGTGAATCATCTGCCCATTGAGATTCAGTTTGGGAC

Coding sequence (CDS)

ATGTTCGAGGCAGTTGAAGGTTTTCTTCACTACTCTTTTGCTCCAAGTCAGTACTATTTATTAGCAATGGCGGATGAAGAACCTGTTGATCAGAAAAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTACTTGAATATCAGGTACAGGGTGCGTGCGTGAAGAGAATCCAAGGGGACGAGAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCATCGACAAATGTGTTGCACCAAAACTATTTACGAAACTGAAGTAA

Homology

[Close]

BLAST of CmoCh16G003920 vs. Swiss-Prot
Match: QCR6_SOLTU (Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 4.0e-25
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQVQGACVKRIQGDESGHKHCTGQYFDYWSCID 82
          M+DEE VD K  LE +CKPKCV+ L EYQ   AC KR++GDESGHKHCTGQYFDYW CID
Sbjct: 1  MSDEEVVDPKATLEVSCKPKCVRQLKEYQ---ACTKRVEGDESGHKHCTGQYFDYWHCID 60

Query: 83 KCVAPKLFTKLK 95
          KCVA KLF  LK
Sbjct: 61 KCVAAKLFDHLK 69

[Close]

BLAST of CmoCh16G003920 vs. Swiss-Prot
Match: QCR6_DICDI (Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium discoideum GN=uqcrh PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 1


Query: 35 LEEACKPKCVKPLLEYQVQGACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAPKLFTKLK 94
          ++E C   C K    YQ     V +++ DE  +  C GQ+ ++  CIDKCV PKLF +LK
Sbjct: 12 IQEGCASGCEKSWSAYQACSGRVAKLEHDEKAN--CLGQFLEHVQCIDKCVGPKLFAQLK 69

[Close]

BLAST of CmoCh16G003920 vs. TrEMBL
Match: M5XBF4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017907mg PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 8.1e-33
Identity = 66/84 (78.57%), Postives = 71/84 (84.52%), Query Frame = 1


Query: 11  YSFAPSQYYLLAMADEEPVDQKRYLEEACKPKCVKPLLEYQVQGACVKRIQGDESGHKHC 70
           Y       ++  MADEEPVDQK+YLEE+CKPKCVKPLLEYQ   ACVKRIQGDESGHKHC
Sbjct: 41  YDIVDVGLFVFCMADEEPVDQKKYLEESCKPKCVKPLLEYQ---ACVKRIQGDESGHKHC 100

Query: 71  TGQYFDYWSCIDKCVAPKLFTKLK 95
           TGQYFDYWSC+DKCVAPKLF KLK
Sbjct: 101 TGQYFDYWSCVDKCVAPKLFPKLK 121

[Close]

BLAST of CmoCh16G003920 vs. TrEMBL
Match: A0A0A0L6I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G212480 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-32
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 23  MADEEPVDQKRYLEEACKPKCVKPLLEYQVQGACVKRIQGDESGHKHCTGQYFDYWSCID 82
           +ADEEPVDQKRYLEEACKPKCVKPLLEYQ   ACVKRIQGD+SGHKHCTGQYFDYWSCID
Sbjct: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQ---ACVKRIQGDDSGHKHCTGQYFDYWSCID 119

Query: 83  KCVAPKLFTKLK 95
           KCVAPKL TKLK
Sbjct: 120 KCVAPKLLTKLK 128

[Close]

BLAST of CmoCh16G003920 vs. TrEMBL
Match: B9H7R3_POPTR (Cytochrome b-c1 complex subunit 6 OS=Populus trichocarpa GN=POPTR_0005s21330g PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.4e-32
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQVQGACVKRIQGDESGHKHCTGQYFDYWSCID 82
          MADEEPVD K+YLEEACKPKCV+PLLEYQ   ACVKRIQGDESGHKHCTGQYFDYWSC+D
Sbjct: 1  MADEEPVDPKKYLEEACKPKCVRPLLEYQ---ACVKRIQGDESGHKHCTGQYFDYWSCVD 60

Query: 83 KCVAPKLFTKLK 95
          KCVAPKLFTKLK
Sbjct: 61 KCVAPKLFTKLK 69

[Close]

BLAST of CmoCh16G003920 vs. TrEMBL
Match: A0A0B2R3C6_GLYSO (Cytochrome b-c1 complex subunit 6 OS=Glycine soja GN=glysoja_011311 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.8e-32
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 1


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQVQGACVKRIQGDESGHKHCTGQYFDYWSCID 82
          MADEEPVDQKRYLEE+CKPKCVKPLLEYQ   AC+KRI GDESG KHCTGQYFDYWSCID
Sbjct: 1  MADEEPVDQKRYLEESCKPKCVKPLLEYQ---ACIKRIHGDESGQKHCTGQYFDYWSCID 60

Query: 83 KCVAPKLFTKLK 95
          KCVAPKLFTKLK
Sbjct: 61 KCVAPKLFTKLK 69

[Close]

BLAST of CmoCh16G003920 vs. TrEMBL
Match: C6SZG8_SOYBN (Cytochrome b-c1 complex subunit 6 OS=Glycine max GN=GLYMA_08G181800 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.8e-32
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 1


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQVQGACVKRIQGDESGHKHCTGQYFDYWSCID 82
          MADEEPVDQKRYLEE+CKPKCVKPLLEYQ   AC+KRI GDESG KHCTGQYFDYWSCID
Sbjct: 1  MADEEPVDQKRYLEESCKPKCVKPLLEYQ---ACIKRIHGDESGQKHCTGQYFDYWSCID 60

Query: 83 KCVAPKLFTKLK 95
          KCVAPKLFTKLK
Sbjct: 61 KCVAPKLFTKLK 69

[Close]

BLAST of CmoCh16G003920 vs. TAIR10
Match: AT1G15120.2 (AT1G15120.2 Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-27
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 1


Query: 23  MADEEPVDQKRYLEEACKPKCVKPLLEYQVQGACVKRIQGDESGHKHCTGQYFDYWSCID 82
           MAD+E VD K+YLEE+CKPKCVKPLLEYQ   ACVKRIQGD+SGHKHCTGQYFDYW CID
Sbjct: 68  MADDEVVDPKKYLEESCKPKCVKPLLEYQ---ACVKRIQGDDSGHKHCTGQYFDYWQCID 126

Query: 83  KC 85
           KC
Sbjct: 128 KC 126

[Close]

BLAST of CmoCh16G003920 vs. TAIR10
Match: AT2G01090.1 (AT2G01090.1 Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 117.5 bits (293), Expect = 4.5e-27
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQVQGACVKRIQGDESGHKHCTGQYFDYWSCID 82
          M +E+ VDQKRY EE+CKPKCVKPLLEYQ   ACVKRIQ DESGHKHCTGQYFDYW C+D
Sbjct: 1  MPEEDVVDQKRYFEESCKPKCVKPLLEYQ---ACVKRIQDDESGHKHCTGQYFDYWHCVD 60

Query: 83 KCVA 87
          KCV+
Sbjct: 61 KCVS 61

[Close]

BLAST of CmoCh16G003920 vs. NCBI nr
Match: gi|659112182|ref|XP_008456103.1| (PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 2.3e-33
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQVQGACVKRIQGDESGHKHCTGQYFDYWSCID 82
          MADEEPVDQKRYLEEACKPKCVKPLLEYQ   ACVKRIQGD+SGHKHCTGQYFDYWSCID
Sbjct: 1  MADEEPVDQKRYLEEACKPKCVKPLLEYQ---ACVKRIQGDDSGHKHCTGQYFDYWSCID 60

Query: 83 KCVAPKLFTKLK 95
          KCVAPKLFTKLK
Sbjct: 61 KCVAPKLFTKLK 69

[Close]

BLAST of CmoCh16G003920 vs. NCBI nr
Match: gi|449445858|ref|XP_004140689.1| (PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 67/72 (93.06%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQVQGACVKRIQGDESGHKHCTGQYFDYWSCID 82
          MADEEPVDQKRYLEEACKPKCVKPLLEYQ   ACVKRIQGD+SGHKHCTGQYFDYWSCID
Sbjct: 1  MADEEPVDQKRYLEEACKPKCVKPLLEYQ---ACVKRIQGDDSGHKHCTGQYFDYWSCID 60

Query: 83 KCVAPKLFTKLK 95
          KCVAPKL TKLK
Sbjct: 61 KCVAPKLLTKLK 69

[Close]

BLAST of CmoCh16G003920 vs. NCBI nr
Match: gi|596114380|ref|XP_007221592.1| (hypothetical protein PRUPE_ppa017907mg [Prunus persica])

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 66/84 (78.57%), Postives = 71/84 (84.52%), Query Frame = 1


Query: 11  YSFAPSQYYLLAMADEEPVDQKRYLEEACKPKCVKPLLEYQVQGACVKRIQGDESGHKHC 70
           Y       ++  MADEEPVDQK+YLEE+CKPKCVKPLLEYQ   ACVKRIQGDESGHKHC
Sbjct: 41  YDIVDVGLFVFCMADEEPVDQKKYLEESCKPKCVKPLLEYQ---ACVKRIQGDESGHKHC 100

Query: 71  TGQYFDYWSCIDKCVAPKLFTKLK 95
           TGQYFDYWSC+DKCVAPKLF KLK
Sbjct: 101 TGQYFDYWSCVDKCVAPKLFPKLK 121

[Close]

BLAST of CmoCh16G003920 vs. NCBI nr
Match: gi|700202422|gb|KGN57555.1| (hypothetical protein Csa_3G212480 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 2.6e-32
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 23  MADEEPVDQKRYLEEACKPKCVKPLLEYQVQGACVKRIQGDESGHKHCTGQYFDYWSCID 82
           +ADEEPVDQKRYLEEACKPKCVKPLLEYQ   ACVKRIQGD+SGHKHCTGQYFDYWSCID
Sbjct: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQ---ACVKRIQGDDSGHKHCTGQYFDYWSCID 119

Query: 83  KCVAPKLFTKLK 95
           KCVAPKL TKLK
Sbjct: 120 KCVAPKLLTKLK 128

[Close]

BLAST of CmoCh16G003920 vs. NCBI nr
Match: gi|645223858|ref|XP_008218833.1| (PREDICTED: cytochrome b-c1 complex subunit 6 [Prunus mume])

HSP 1 Score: 146.0 bits (367), Expect = 3.4e-32
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 23 MADEEPVDQKRYLEEACKPKCVKPLLEYQVQGACVKRIQGDESGHKHCTGQYFDYWSCID 82
          MADEEPVDQK+YLEE+CKPKCVKPLLEYQ   ACVKRIQGDESGHKHCTGQYFDYWSC+D
Sbjct: 1  MADEEPVDQKKYLEESCKPKCVKPLLEYQ---ACVKRIQGDESGHKHCTGQYFDYWSCVD 60

Query: 83 KCVAPKLFTKLK 95
          KCVAPKLF KLK
Sbjct: 61 KCVAPKLFPKLK 69

The following BLAST results are available for this feature:

BLAST of CmoCh16G003920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
QCR6_SOLTU	4.0e-25	72.22	Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2	[more]
QCR6_DICDI	1.1e-06	40.00	Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium discoideum GN=uqcrh ...	[more]

BLAST of CmoCh16G003920 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XBF4_PRUPE	8.1e-33	78.57	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017907mg PE=4 SV=1	[more]
A0A0A0L6I2_CUCSA	1.8e-32	91.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G212480 PE=4 SV=1	[more]
B9H7R3_POPTR	2.4e-32	90.28	Cytochrome b-c1 complex subunit 6 OS=Populus trichocarpa GN=POPTR_0005s21330g PE...	[more]
A0A0B2R3C6_GLYSO	6.8e-32	90.28	Cytochrome b-c1 complex subunit 6 OS=Glycine soja GN=glysoja_011311 PE=3 SV=1	[more]
C6SZG8_SOYBN	6.8e-32	90.28	Cytochrome b-c1 complex subunit 6 OS=Glycine max GN=GLYMA_08G181800 PE=2 SV=1	[more]

BLAST of CmoCh16G003920 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15120.2	1.6e-27	83.87	Ubiquinol-cytochrome C reductase hinge protein	[more]
AT2G01090.1	4.5e-27	79.69	Ubiquinol-cytochrome C reductase hinge protein	[more]

BLAST of CmoCh16G003920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112182\|ref\|XP_008456103.1\|	2.3e-33	94.44	PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo]	[more]
gi\|449445858\|ref\|XP_004140689.1\|	1.2e-32	93.06	PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis sativus]	[more]
gi\|596114380\|ref\|XP_007221592.1\|	1.2e-32	78.57	hypothetical protein PRUPE_ppa017907mg [Prunus persica]	[more]
gi\|700202422\|gb\|KGN57555.1\|	2.6e-32	91.67	hypothetical protein Csa_3G212480 [Cucumis sativus]	[more]
gi\|645223858\|ref\|XP_008218833.1\|	3.4e-32	90.28	PREDICTED: cytochrome b-c1 complex subunit 6 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003422	Cyt_b-c1_6
IPR023184	Ubol_cytC_Rdtase_hinge_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c

Vocabulary: **Molecular Function**
Term	Definition
GO:0008121	ubiquinol-cytochrome-c reductase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0015992	proton transport
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0070469	respiratory chain
cellular_component	GO:0045275	respiratory chain complex III
cellular_component	GO:0005750	mitochondrial respiratory chain complex III
molecular_function	GO:0008121	ubiquinol-cytochrome-c reductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G003920.1	CmoCh16G003920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003422	Cytochrome b-c1 complex, subunit 6	PANTHER	PTHR15336	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN	coord: 18..94 score: 2.1
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	GENE3D	G3DSA:1.10.287.20		coord: 25..94 score: 8.6
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	PFAM	PF02320	UCR_hinge	coord: 30..94 score: 2.0
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	unknown	SSF81531	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 23..94 score: 5.75
None	No IPR available	PANTHER	PTHR15336:SF2	SUBFAMILY NOT NAMED	coord: 18..94 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G003920	CmaCh04G005070	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G003920	CmaCh16G003670	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G003920	Csa3G212480	Cucumber (Chinese Long) v2	cmocuB307
CmoCh16G003920	MELO3C019495	Melon (DHL92) v3.5.1	cmomeB290
CmoCh16G003920	ClCG05G009840	Watermelon (Charleston Gray)	cmowcgB291
CmoCh16G003920	CSPI03G18710	Wild cucumber (PI 183967)	cmocpiB315
CmoCh16G003920	Lsi05G001970	Bottle gourd (USVL1VR-Ls)	cmolsiB304
CmoCh16G003920	Cp4.1LG01g02120	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G003920	Cp4.1LG14g04110	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G003920	MELO3C019495.2	Melon (DHL92) v3.6.1	cmomedB332
CmoCh16G003920	CsaV3_3G018780	Cucumber (Chinese Long) v3	cmocucB0370
CmoCh16G003920	Cla97C05G092230	Watermelon (97103) v2	cmowmbB332
CmoCh16G003920	Bhi01G001240	Wax gourd	cmowgoB0434
CmoCh16G003920	CsGy3G018560	Cucumber (Gy14) v2	cgybcmoB301
CmoCh16G003920	Carg11295	Silver-seed gourd	carcmoB0898
CmoCh16G003920	Carg08176	Silver-seed gourd	carcmoB0509

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G003920	CmoCh04G005450	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G003920	Cucumber (Chinese Long) v3	cmocucB0383
CmoCh16G003920	Cucumber (Chinese Long) v2	cmocuB320
CmoCh16G003920	Watermelon (97103) v1	cmowmB311
CmoCh16G003920	Cucumber (Gy14) v2	cgybcmoB316