CmaCh04G005070 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G005070
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cytochrome b-c1 complex subunit 6
Location	Cma_Chr04 : 2581292 .. 2584169 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGAGATAAAGGCATGGGTTGATGGACATTTTGAACTCATGGAAAAAAGTTCGTTGATTTTGATGCTTGCATTTATCCACAAACAACTAATGACAATTTGGCAACTATATTCTTCTTTTTCTTTTTCCGTATTGATGTTTGTTTTTATGATAATTCAAATTTGAATGTTTCCAGGTTTTCTAGCCTGCTCTTTTTGCTCCAAGTCAGTGTTATTTATTAGCAATGTGAGTATTTTTTTTTAGCTTCACCATTTATTATACATTCTCCTTTTACCCTTTTATTTCTTACACGAACCGTTTTGATTGTCTGCTACATTGCTTTAGAGTTATAACCCTGTAGTCCAGTGTTGTTTTGTTAGCATTTATTGCATTCTTATTTTGCGTTCATAGATTTCCAAACCATTATTTCTTCCCTCAAAAGTAGCTCACAGTGGGAAGAGGAAGAGTTATTGTTGGGGGTGGGGGGACTGTTGAGCACATACTTGGACAAATGTTTCTCTGAATTTTGGTTTTTTGAACAACCGCGATGACAAATATCATCTCCGGGCTGCTTAAATTGAAACTATGAAATATAGAAGTTCTGTGAATTTTACTTATTTTGGGAAGAATGAGGTTGCTGTATATTTAGTTTCAATGTAAATCAGTTGTGTTAACACTTGGAAGATGTAGCATTTTACCGGCTTAGTGATCTGATCTATATTTATGGCGATTTTTAAGGTTTAATAATCAGTAGGATACTTACATTCTTGAATACAAATGATTGAAGCATGTCAGAATGGAAATTGAATTACTTCATATGGTTTGAATCTACTTGTACATGCATATCTTCTTCATACTCGGTGTCTTTATCTTTCATAATGTTGAAGATTATTTGTATTTGATGTTAACTGATCTACATTTCCTTGTTTCTTGGTAATAGGGCAGATGAAGAACCCGTTGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTGCTTGAATACCAGGTATGTAGTGTTTTATTGGTCTTTGTTGTGGGGGAGTAACAAGTTGTATATGTGTTTTCTTCAGTTATTTGACTTGTATTCATCATTCTCTGTTTTTTTTTTTTCATGAATAAACTTTAGAAACCTGGTTTCATGGATGGTTATATTTCTATTCTCATTAGAAATAATCAGTAGGTTGAAGATTGTGTATCTCTCCATTGAGTACATCCATTTATAAACTGTTAATTTCCTTGTTAACTTTGAACTTTGCATCAGTTAGTATTCAGCGAACTGTTCCTTCAAAGAAATGCCAGCTTGAAGGGAGTGGCCTTTCTCAGAAAATTAGAGTTTAAAAAGCCGTAAAGGGTGTTGGAGTTATGAATTGCGATGGGATTTGGTGGTGGGTGGGTTTCTTTGGTTGAAAATAATAAAATATACTAGTGGCCACCAATCACTTAAACTTATGGATCTGTTTGGAGAATGACCAAGGAAAGTTGCAAGAATGAAATTCAAATTTTGGTACTAGTTTTATCATTTCTCTAACGAAAGTCCAGGTTCCAATAAAAAGTTATTAGCGCAACCTTGTGGGGGAAACGCAATTGTCCTTGTGCAATTATGGTGAAGGATCAATGCCCTCTCATGCTAATCATTTAGGTCATGGAGGCAACAGTAGCGTCCTCAACAAGTTTTCTTTTACAAAATGTAGCTCCTTTGAGTTGTGAATTCAACTCAATGTTGAGGACGAAACTGAAGATATATTTTCTCCAAATCTGAGACAGTTTTGATTTACTGATTCTAGTTGATAAGCTTGATATCATGCTTTGGGCTTCACGTTGACTCCCTTACCAGTCGTTCATTCATTGTGAATCTGCTTCCCCGTGGATACCGGTCCCCACCAAATTCGGAGACATATATATTGGGATGTGCATATGATGTGCTTTTATAAAAATTCACAAATTCATATATTCTCTTCTATATGTGGGTTTCAACTTATGACACCTTGTTGATGTATAGGAATGAGTAGGGGGTCTTAACTTGGTACTTTATTCATCACGTCTGAGCAGAATCAAATTGTAGAATTGGTATAAAGATAAGGTAAAATGATGGCTATTGTGTTTCTATGTGATAGGCATGCGTGAAGAGAATCCAAGGGGATGACAGTGGCCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCGTCGACAAATGTGTGAGTATATCTTTGGTTGTTGTAGGAGGAAGTAGATTAGATTGCAGAAGAAGTTGTCCATAAACAACTTGAGTATAGGCAAGCTCGATCTAACTAACTTCAAAGACGCTTTTTGTTGCAGGTTGCACCAAAACTATTTACGAAAATAAAGTAAATGGAGAGTTAGGCATGTGGGGGTTCCTATCCTTTTGGTTGCAGCATTTTTCTGATTTTTTATGCAATGCCTTTTTGTGTACTTCATCTTCGCATCTACAAGAAATGCCAAGAACTTTGCAAAAACTATGAAGACCTTAGCCATCATCAATAAGAAAGGACGTTGGATTGTATGAACACTTCTTCCCTTAATTTAGTTTTATGATTGCTTTATTAACATTAGTGATCCAATCATAAAATTGTTAGGCAACATGATCCCACATTGAATGCTGTTTATCAAATTGCTGTGCTGTTTGATGTTTTCAGATAATTGAATGATCAGTATGATCCTATTTCTGTTGCTGGTTCCAAGATTTGTTTCTCGATCGAAGAGTGAGGTAGTTGTTGTAATGCGCTTTAATCAGTTGATCTATGTTTTAGATTTTCAATTGAAAACTTCTATCGGTCACATTTATGTTGATTTCGGTTTATGATTTTATGATTTGTGTTACTATTTTAATTTATTCATCCTATTGGTCCT

mRNA sequence

ATGCTTGAGATAAAGGCATGGCCTGCTCTTTTTGCTCCAAGTCAGTGTTATTTATTAGCAATGGCAGATGAAGAACCCGTTGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTGCTTGAATACCAGGCATGCGTGAAGAGAATCCAAGGGGATGACAGTGGCCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCGTCGACAAATGTGTGAGTTGCACCAAAACTATTTACGAAAATAAAGTAAATGGAGAGTTAGGCATGTGGGGGTTCCTATCCTTTTGGTTGCAGCATTTTTCTGATTTTTTATGCAATGCCTTTTTGTGTACTTCATCTTCGCATCTACAAGAAATGCCAAGAACTTTGCAAAAACTATGAAGACCTTAGCCATCATCAATAAGAAAGGACGTTGGATTATAATTGAATGATCAGTATGATCCTATTTCTGTTGCTGGTTCCAAGATTTGTTTCTCGATCGAAGAGTGAGGTAGTTGTTGTAATGCGCTTTAATCAGTTGATCTATGTTTTAGATTTTCAATTGAAAACTTCTATCGGTCACATTTATGTTGATTTCGGTTTATGATTTTATGATTTGTGTTACTATTTTAATTTATTCATCCTATTGGTCCT

Coding sequence (CDS)

ATGCTTGAGATAAAGGCATGGCCTGCTCTTTTTGCTCCAAGTCAGTGTTATTTATTAGCAATGGCAGATGAAGAACCCGTTGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTGCTTGAATACCAGGCATGCGTGAAGAGAATCCAAGGGGATGACAGTGGCCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCGTCGACAAATGTGTGAGTTGCACCAAAACTATTTACGAAAATAAAGTAAATGGAGAGTTAGGCATGTGGGGGTTCCTATCCTTTTGGTTGCAGCATTTTTCTGATTTTTTATGCAATGCCTTTTTGTGTACTTCATCTTCGCATCTACAAGAAATGCCAAGAACTTTGCAAAAACTATGA

Protein sequence

MLEIKAWPALFAPSQCYLLAMADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVSCTKTIYENKVNGELGMWGFLSFWLQHFSDFLCNAFLCTSSSHLQEMPRTLQKL

Homology

[Close]

BLAST of CmaCh04G005070 vs. Swiss-Prot
Match: QCR6_SOLTU (Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 4.1e-23
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 21 MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 80
          M+DEE VD K  LE +CKPKCV+ L EYQAC KR++GD+SGHKHCTGQYFDYW C+DKCV
Sbjct: 1  MSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRVEGDESGHKHCTGQYFDYWHCIDKCV 60

Query: 81 S 82
          +
Sbjct: 61 A 61

[Close]

BLAST of CmaCh04G005070 vs. TrEMBL
Match: Q9XI58_ARATH (Cytochrome b-c1 complex subunit 6 OS=Arabidopsis thaliana GN=F9L1.5 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.8e-31
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 1


Query: 22 ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVS 81
          AD+E VD K+YLEE+CKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYW C+DKCVS
Sbjct: 15 ADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWQCIDKCVS 74

Query: 82 CTKTIYENKV-NGELG 97
          CTK + E K+  GE G
Sbjct: 75 CTKAVCETKMKRGEAG 90

[Close]

BLAST of CmaCh04G005070 vs. TrEMBL
Match: A0A0A0L6I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G212480 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 21  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 80
           +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCV
Sbjct: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 119

Query: 81  S 82
           +
Sbjct: 120 A 120

[Close]

BLAST of CmaCh04G005070 vs. TrEMBL
Match: M5XBF4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017907mg PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-29
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 1


Query: 17  YLLAMADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCV 76
           ++  MADEEPVDQK+YLEE+CKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCV
Sbjct: 49  FVFCMADEEPVDQKKYLEESCKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCV 108

Query: 77  DKCVS 82
           DKCV+
Sbjct: 109 DKCVA 113

[Close]

BLAST of CmaCh04G005070 vs. TrEMBL
Match: V4KC54_EUTSA (Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10009667mg PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.7e-29
Identity = 61/87 (70.11%), Postives = 71/87 (81.61%), Query Frame = 1


Query: 11 FAPSQCYLLAMADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYF 70
          F  S  ++L MAD+E VD K+YLEE+CKPKCVKPLL YQACVKRIQGDDSGHKHCTGQYF
Sbjct: 13 FFRSSSFVL-MADDEVVDPKKYLEESCKPKCVKPLLSYQACVKRIQGDDSGHKHCTGQYF 72

Query: 71 DYWSCVDKCVSCTKTIYENKV-NGELG 97
          DYW C+DKCVSCT+   + ++  GE G
Sbjct: 73 DYWHCIDKCVSCTQAFCKTEMKRGEAG 98

[Close]

BLAST of CmaCh04G005070 vs. TrEMBL
Match: A0A0D2QX91_GOSRA (Cytochrome b-c1 complex subunit 6 OS=Gossypium raimondii GN=B456_002G001600 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.5e-29
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 1


Query: 21 MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 80
          MADEEPVDQK+YLE+ CKPKCVK L  Y+ACVKRIQGD+SGHKHCTGQYFDYWSCVDKCV
Sbjct: 1  MADEEPVDQKKYLEDGCKPKCVKQLRSYEACVKRIQGDESGHKHCTGQYFDYWSCVDKCV 60

Query: 81 SCTKTIYENKV 92
          SCT  I++ ++
Sbjct: 61 SCTIAIHKTEI 71

[Close]

BLAST of CmaCh04G005070 vs. TAIR10
Match: AT1G15120.2 (AT1G15120.2 Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-31
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 1


Query: 21  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 80
           MAD+E VD K+YLEE+CKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYW C+DKC 
Sbjct: 68  MADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWQCIDKCF 127

Query: 81  -----------SCTKTIYENKV-NGELG 97
                       CTK + E K+  GE G
Sbjct: 128 DTEMKLDFGSSGCTKAVCETKMKRGEAG 155

[Close]

BLAST of CmaCh04G005070 vs. TAIR10
Match: AT2G01090.1 (AT2G01090.1 Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-28
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 21 MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 80
          M +E+ VDQKRY EE+CKPKCVKPLLEYQACVKRIQ D+SGHKHCTGQYFDYW CVDKCV
Sbjct: 1  MPEEDVVDQKRYFEESCKPKCVKPLLEYQACVKRIQDDESGHKHCTGQYFDYWHCVDKCV 60

Query: 81 S 82
          S
Sbjct: 61 S 61

[Close]

BLAST of CmaCh04G005070 vs. NCBI nr
Match: gi|5103810|gb|AAD39640.1|AC007591_5 (Similar to gb|X79273 cytochrome c reductase hinge protein subunit from Solanum tuberosum. ESTs gb|T45282 and gb|T21596 come from this gene [Arabidopsis thaliana])

HSP 1 Score: 142.1 bits (357), Expect = 6.9e-31
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 1


Query: 22 ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVS 81
          AD+E VD K+YLEE+CKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYW C+DKCVS
Sbjct: 15 ADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWQCIDKCVS 74

Query: 82 CTKTIYENKV-NGELG 97
          CTK + E K+  GE G
Sbjct: 75 CTKAVCETKMKRGEAG 90

[Close]

BLAST of CmaCh04G005070 vs. NCBI nr
Match: gi|449445858|ref|XP_004140689.1| (PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 7.7e-30
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 21 MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 80
          MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCV
Sbjct: 1  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 60

Query: 81 S 82
          +
Sbjct: 61 A 61

[Close]

BLAST of CmaCh04G005070 vs. NCBI nr
Match: gi|659112182|ref|XP_008456103.1| (PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 7.7e-30
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 21 MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 80
          MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCV
Sbjct: 1  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 60

Query: 81 S 82
          +
Sbjct: 61 A 61

[Close]

BLAST of CmaCh04G005070 vs. NCBI nr
Match: gi|700202422|gb|KGN57555.1| (hypothetical protein Csa_3G212480 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-29
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 21  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 80
           +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCV
Sbjct: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 119

Query: 81  S 82
           +
Sbjct: 120 A 120

[Close]

BLAST of CmaCh04G005070 vs. NCBI nr
Match: gi|596114380|ref|XP_007221592.1| (hypothetical protein PRUPE_ppa017907mg [Prunus persica])

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-29
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 1


Query: 17  YLLAMADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCV 76
           ++  MADEEPVDQK+YLEE+CKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCV
Sbjct: 49  FVFCMADEEPVDQKKYLEESCKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCV 108

Query: 77  DKCVS 82
           DKCV+
Sbjct: 109 DKCVA 113

The following BLAST results are available for this feature:

BLAST of CmaCh04G005070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
QCR6_SOLTU	4.1e-23	72.13	Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2	[more]

BLAST of CmaCh04G005070 vs. TrEMBL


Match Name	E-value	Identity	Description
Q9XI58_ARATH	4.8e-31	80.26	Cytochrome b-c1 complex subunit 6 OS=Arabidopsis thaliana GN=F9L1.5 PE=3 SV=1	[more]
A0A0A0L6I2_CUCSA	1.2e-29	95.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G212480 PE=4 SV=1	[more]
M5XBF4_PRUPE	2.0e-29	87.69	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017907mg PE=4 SV=1	[more]
V4KC54_EUTSA	2.7e-29	70.11	Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10009667mg P...	[more]
A0A0D2QX91_GOSRA	4.5e-29	78.87	Cytochrome b-c1 complex subunit 6 OS=Gossypium raimondii GN=B456_002G001600 PE=3...	[more]

BLAST of CmaCh04G005070 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15120.2	2.5e-31	68.18	Ubiquinol-cytochrome C reductase hinge protein	[more]
AT2G01090.1	1.2e-28	85.25	Ubiquinol-cytochrome C reductase hinge protein	[more]

BLAST of CmaCh04G005070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|5103810\|gb\|AAD39640.1\|AC007591_5	6.9e-31	80.26	Similar to gb\|X79273 cytochrome c reductase hinge protein subunit from Solanum t...	[more]
gi\|449445858\|ref\|XP_004140689.1\|	7.7e-30	96.72	PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis sativus]	[more]
gi\|659112182\|ref\|XP_008456103.1\|	7.7e-30	96.72	PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo]	[more]
gi\|700202422\|gb\|KGN57555.1\|	1.7e-29	95.08	hypothetical protein Csa_3G212480 [Cucumis sativus]	[more]
gi\|596114380\|ref\|XP_007221592.1\|	2.9e-29	87.69	hypothetical protein PRUPE_ppa017907mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003422	Cyt_b-c1_6
IPR023184	Ubol_cytC_Rdtase_hinge_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c

Vocabulary: **Molecular Function**
Term	Definition
GO:0008121	ubiquinol-cytochrome-c reductase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0015992	proton transport
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0070469	respiratory chain
cellular_component	GO:0045275	respiratory chain complex III
cellular_component	GO:0005750	mitochondrial respiratory chain complex III
molecular_function	GO:0008121	ubiquinol-cytochrome-c reductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G005070.1	CmaCh04G005070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003422	Cytochrome b-c1 complex, subunit 6	PANTHER	PTHR15336	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN	coord: 21..80 score: 7.0
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	GENE3D	G3DSA:1.10.287.20		coord: 23..81 score: 9.4
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	PFAM	PF02320	UCR_hinge	coord: 28..81 score: 1.9
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	unknown	SSF81531	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 21..81 score: 7.06
None	No IPR available	PANTHER	PTHR15336:SF2	SUBFAMILY NOT NAMED	coord: 21..80 score: 7.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G005070	Csa3G212480	Cucumber (Chinese Long) v2	cmacuB697
CmaCh04G005070	MELO3C019495	Melon (DHL92) v3.5.1	cmameB691
CmaCh04G005070	ClCG05G009840	Watermelon (Charleston Gray)	cmawcgB659
CmaCh04G005070	CSPI03G18710	Wild cucumber (PI 183967)	cmacpiB705
CmaCh04G005070	CmoCh16G003920	Cucurbita moschata (Rifu)	cmacmoB701
CmaCh04G005070	CmoCh04G005450	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G005070	Lsi05G001970	Bottle gourd (USVL1VR-Ls)	cmalsiB690
CmaCh04G005070	Cp4.1LG01g02120	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G005070	Cp4.1LG14g04110	Cucurbita pepo (Zucchini)	cmacpeB715
CmaCh04G005070	MELO3C019495.2	Melon (DHL92) v3.6.1	cmamedB777
CmaCh04G005070	CsaV3_3G018780	Cucumber (Chinese Long) v3	cmacucB0829
CmaCh04G005070	Cla97C05G092230	Watermelon (97103) v2	cmawmbB763
CmaCh04G005070	Bhi01G001240	Wax gourd	cmawgoB0852
CmaCh04G005070	CsGy3G018560	Cucumber (Gy14) v2	cgybcmaB410
CmaCh04G005070	Carg11295	Silver-seed gourd	carcmaB0925
CmaCh04G005070	Carg08176	Silver-seed gourd	carcmaB0529

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G005070	CmaCh16G003670	Cucurbita maxima (Rimu)	cmacmaB351

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G005070	Watermelon (97103) v1	cmawmB703