CsGy3G018560 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G018560
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Cytochrome b-c1 complex subunit 6
Location	Chr3 : 14715013 .. 14719603 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGACCCGACCCGAACAGACTAAGCAGCCGACCCGAAAAGCTTCTAATGAACCGGAGAAGTGAAAGATTTGTCATATTGCAATTTCTCAGCTTCCAAACTAAACCTAATCAGAGTTCCTAGTTTCCTCTCAGATTCGTGTTTCAGCTTCCAAAGGTATGAGTTTTTTAGCCCAAGAATTCTTCCCTTGTTTTTAACTTTTTTATTTGTTTCTAAGCTTTTTCTTTATTTTTTTTTATTTTTTATTCTTGTTCGATTTTTATTATCAGATCCAACATTCATCGATCGTGTATGTTTTGTATTTTCCGGTGCTTTTGATTTCTTCTATCATTTGGGATCGTTTGCTCTGAATTTTTCCAAGAAATCGATGGAGTATTATGTTTTTTTTGTTTTACAATATTCATTTCTTTCTTCTACCTCTCAGTAGTCGTTTGTATTTGAGGGTTTTTCCCCTCTTGTTGCATTATATGATCTGATTCTTGTTTTTGATAGACATTCAACTTTCCAATTTTGAAATGGGGGGTTTCCATTTATTTGGAATGGGATCAAGTTTAACGAGTATTATTACGTGGGAACAAATCGTTGGATTGAAAGCAATTGCTTTCCCTTTGGTCAAAATTGCAAGGTTCTCCATATTTCAGAGTATCTTCCTTTTTTAATGTTTCATTTCTGAACCTGAAATCTAATCTCATGGCAACGACGGTCTTAAAAGATTGAGTTTAGCTGGAGACTCGTTAATTACAAATCTCTTTTTTTTAAAAAAAAAAATATATATTTATATATTTTTTCTGCCATTCCTCAAATGAATGCTTGAGTTAAAGGCATGGACATCTCGAATTTGTGGAATAAAGTTCATGGTTTTGGTGTCAGTATTTTTGTACAAACTAAAACAATGACCTTTTTCTTTATTCATATTGATGCTTAATTTGAATTGTTTTTCAGGTTTTCTTGCGTGCTCTTTCCCTCCAAGTCAGTACTCTTTGTTAGCCATGTGAGTATCCCCCTTTTCTTTCCTTTCTGTTTTACCATGTACTATTATCTTCTTGCCTTTTTATTTCTTACACAATGAACTTTTTTATTGTCTGCTACATTACTATAGATTTGTATCCCTGTAGTCAAGTGCTGTTTTGTTAGCGTTTATATTTTTATTTGGTATTCATAAATTTCTAAGCCACTATTCTTCCTTTGTAAGTATAGCTCATTGCTGTCAGAAGAGTTATTAAGGTGGACTGTAAAGCACATACTGGGGCAAACTTTTCTCTGAATATTGATATTTTGAGCAACTATCATGACAAGTATCATCTCTCTGTTAGGATCTTACTTGAACAGGATCTGTTCTATAGGTAGTAAACTATGACCTTGAGTTCTAAGGAGACAAGTATCATCTCCCTGTTGCTGCAATTGAAAAGATGAAATATAAAAGCGCTGATGAATTTTGCACACATTGGAAAGAATCGGTTTGCTGAAGATTTAGTTTCAATGAGACAGTAGATGTGCTAGCATTTAGTAGATGTAGCATTTTGTTCGCTTGGTGATGTGATCAACATTTTTGGAGATTATTAAGGTTTAATAATCAGCAGGATAGTTGCATCATTGCATGTCTTCTCCATACCCTCTATCTTTATCTTTCATAATGTTAAAGATTATTTGTTTTGATGTCAACTTATCTATGTTTCCTTGATTCTTCATAATATGTAGGGCGGATGAAGAGCCTGTTGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAACCCAAGTGTGTGAAACCACTACTTGAATATCAGGTACATTGTGTTTTATTGATACTTTGTTGTGGGGGATTGATGAGTCTTAGTGAAGTTGGATATACTAATTTCTTCAGTTGTTAGACTTGTATTCATTATTCATTCTTTTTTTCATAATTACTCAACTTTAAAAGTCTGGTCTCATGAGTAGGTATGTTTCTATTCTTTTATTTGGTTAGAAATTAATCTGTCACTATGCTAGATTGAAGATTTTGCATCTCTCCAGTGAATGCGTTCATTATAAATGAGTAGATTTTCTTGTAGCTTCAAACTTTTCTTTGTGACAGAACGGGCAGCCACTGGCCCACCATTGACTCAGTCTTATAGGTCTTTCTGGAGAATAACGAAGCTTAGTTACAGGAGTGAGTTTGATATTAGGTACTTTCTGACAAGACTTGGGCTTCGGCTTGTCATGGTGAATACCAAAATACCATCCTTCAAGAGCAGGAACTGATGGATAGAGGGTAAAGAGAGAAAAAAAATGAAAAGGAAGTTAGAATTGGATTTGGCTCCACCTTTGTTTCTGAATTTTCTTTTGGAAAAAACCAATTGATGTCACCTGGTCCTGATCCCGATCAATAAAGCCGCGCCTCCAGGATAAAGTCTTTCTTTGGGCTGTATGATATTTGGAACATTATTTGGATATTGTGGGCATATTAATGATTTAACTAATAAGTGGTCGTAAGTAAATGAACTTAATAATAAAACAAACAGAATGAAGTCGCTCAAATGCTAAGTAGCATCATTTAAATTCTCATTCTTTTAGTAATTCCAACAACATATTTCATCATTCTGTTTCAATTCTGGGTCCTATCTTGCCATTAAAAGTAACAGGAAGAAAGTTGCTAGTGCAACCAGTTTTTTGGTTTTGGATGAGAATCTTTTCACCTGACAAGCTTACTTTTGGTCTCCTTATGTTGGGTTTTCTTTGTATGCTCTTGTATATTCTTTGTTAAGAAGTTGTTAAGAAGCCTAGTTTTTTTGTCCAAAGCTGTTAGTGCAACCTTACGATGAACACAATTTGACCCTGTGCAATTATGGTGAAAGATCCTTGCTTAGCATGGCAATCATTTTGGTCATGGAGGCAACAATAACCTTCCTTAACAAATTGTCTTAGCTCCCTTTCGTGAATTCAAATCAATATTGAGGACAAAGATATCCTTTTGCCAAAGCTTTAGATATCTCATGTTTCACTGATTCTAGTTGATACTGTGCTTTGGGGTTCAAGTTGACTTGGTCATTCGACATCCTTTTATTGTGAGTTTGATGAATCTCAAAACATGTGTTGGACTTCTTTTTCCTAGGATGCTAGACCTTACCAAATTTGGAGAATTGTTTATTTTGACCTTCATATATGACCTGTTTCCCCTAGTTTTTATGTTTTCCTCTGGATTTTGATTTTGAATACCACTTGTAATTACTCTACAGGTTTAATTTTGTGTAATTTCGTGTAACTGGAGTTCTTTTAGTTGAGCTCCCCATTCTTTTTTCCTATGAGTGTTGAGCTTCCGACCATCATTGGTTGATCAGTGGTAAAAAAGGAAAGTCTTTCAGTAACTAATTAAGAGGTTATAGGTTGACCCATTGGAGACACTCTCAACCATCATAGGTTGACCTAGTGGTTCAATTCATGGTGGACACTTAGATAGGAATTAATTTTCTGAGTTTTTTTGAAACCCAAATGATGTAGGGTATGTAGGGTCAAGCGGGTTGTCCCATTAGATTAGTTGAGATGCGCCTAAGCTAACATGGACACTCGAAAGATATCAAAAAAGGAAAGAAAGAAAAAGAAAAGAGAGTTGAGCTCCCAAAAATATGTATTTTCCCTGAAAATTGGCAAAGTTTATTTAGTCTCTCATATGAGTTTCAGATGATGTCGTTGCTAATATTTTAGTTTATTAACCATGTCTGAGCAGATTCAAATTCTATCAATAGTATAAAGATAAGGTAAAAATGATGGTTATTGTCTTTCCATGTCATAGGCATGCGTGAAGAGAATCCAAGGAGATGACAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCATTGACAAATGTGTAAGTAGCTCTTGGTTCTGTTAGAAACTAAATTGTAGAAAAAGTTGTACACATAAACAAGTTCATTTTAGAAATAAAAACTGAAATAATAACCTTGGAACTAACTTGAAATACACTTTTTTCTTGCAGGTTGCACCAAAACTATTGACGAAACTAAAGTAATGGGAGAGTTGTTAGGGATGTGGGGATCCTATCCTTTTGCTTTTGCAGCATTTTTCTGATTTTTTATGCAATGTCGTTTTGTGAACTTGATTTTTGCATCAACAAAAAATGCCAAGGGCTGTGAAATTTTATAAAAACTGCCAGACCTTTAACCATGGTCAATAAGAAAGGAGATTGGATTCACGTTTGGAGATTTTGAATAACTTCTTCCTTCAATTTTATGGTTGCTTTATATAAACATTAGTGATAGATGAATTCTGGTTTCAGAAAACAAATGTTTAGTAAGGTGTGATCCATTTTTTAGTTTGCTGTTCTTTGATTTATAAAAAATGGCTGTGTTGTTTGAGAATAAGTAGCCGGTTGAGGTTCAATTTGGCAGAAGTAGATCACTTTTTTGGGTCTAATACCTGTCTTCATATCCTAACTTGTATTAAATAACCATGACTGCTGCTCAGATGTCTTGTAAACGATGTGAGCCTTCTTGATTTCTTAAACGTGGTTCCTTCATACTATATTGGTAGGAGATGATGATGTTTCATCTTGTCTGACCCAAGCCTTTCTCAAATAAAC

mRNA sequence

ATGGGTTTGACCCGACCCGAACAGACTAAGCAGCCGACCCGAAAAGCTTCTAATGAACCGGAGAAATTCGTGTTTCAGCTTCCAAAGATCCAACATTCATCGATCGTGTATGTTTTGTATTTTCCGGTGCTTTTGATTTCTTCTATCATTTGGGATCACATTCAACTTTCCAATTTTGAAATGGGGGGTTTCCATTTATTTGGAATGGGATCAAGTTTAACGAGTATTATTACGTGGGAACAAATCGTTGGATTGAAAGCAATTGCTTTCCCTTTGGTCAAAATTGCAAGGGCGGATGAAGAGCCTGTTGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAACCCAAGTGTGTGAAACCACTACTTGAATATCAGGCATGCGTGAAGAGAATCCAAGGAGATGACAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCATTGACAAATGTGTTGCACCAAAACTATTGACGAAACTAAAGTAATGGGAGAGTTGTTAGGGATGTGGGGATCCTATCCTTTTGCTTTTGCAGCATTTTTCTGATTTTTTATGCAATGTCGTTTTGTGAACTTGATTTTTGCATCAACAAAAAATGCCAAGGGCTGTGAAATTTTATAAAAACTGCCAGACCTTTAACCATGGTCAATAAGAAAGGAGATTGGATTCACGTTTGGAGATTTTGAATAACTTCTTCCTTCAATTTTATGGTTGCTTTATATAAACATTAGTGATAGATGAATTCTGGTTTCAGAAAACAAATGTTTAGTAAGGTGTGATCCATTTTTTAGTTTGCTGTTCTTTGATTTATAAAAAATGGCTGTGTTGTTTGAGAATAAGTAGCCGGTTGAGGTTCAATTTGGCAGAAGTAGATCACTTTTTTGGGTCTAATACCTGTCTTCATATCCTAACTTGTATTAAATAACCATGACTGCTGCTCAGATGTCTTGTAAACGATGTGAGCCTTCTTGATTTCTTAAACGTGGTTCCTTCATACTATATTGGTAGGAGATGATGATGTTTCATCTTGTCTGACCCAAGCCTTTCTCAAATAAAC

Coding sequence (CDS)

ATGGGTTTGACCCGACCCGAACAGACTAAGCAGCCGACCCGAAAAGCTTCTAATGAACCGGAGAAATTCGTGTTTCAGCTTCCAAAGATCCAACATTCATCGATCGTGTATGTTTTGTATTTTCCGGTGCTTTTGATTTCTTCTATCATTTGGGATCACATTCAACTTTCCAATTTTGAAATGGGGGGTTTCCATTTATTTGGAATGGGATCAAGTTTAACGAGTATTATTACGTGGGAACAAATCGTTGGATTGAAAGCAATTGCTTTCCCTTTGGTCAAAATTGCAAGGGCGGATGAAGAGCCTGTTGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAACCCAAGTGTGTGAAACCACTACTTGAATATCAGGCATGCGTGAAGAGAATCCAAGGAGATGACAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCATTGACAAATGTGTTGCACCAAAACTATTGACGAAACTAAAGTAA

Protein sequence

MGLTRPEQTKQPTRKASNEPEKFVFQLPKIQHSSIVYVLYFPVLLISSIIWDHIQLSNFEMGGFHLFGMGSSLTSIITWEQIVGLKAIAFPLVKIARADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLLTKLK

Homology

[Close]

BLAST of CsGy3G018560 vs. NCBI nr
Match: KGN57555.1 (hypothetical protein Csa_3G212480 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 1.0e-51
Identity = 105/128 (82.03%), Postives = 105/128 (82.03%), Query Frame = 0


Query: 61  MGGFHLFGMGSSLTSIITWEQIVGLKAIAFPLVKIAR----------------------- 120
           MGGFHLFGMGSSLTSIITWEQIVGLKAIAFPLVKIAR                       
Sbjct: 1   MGGFHLFGMGSSLTSIITWEQIVGLKAIAFPLVKIARIVASLHVFSIPSIFIFHNVKDYL 60

Query: 121 ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA 166
           ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA
Sbjct: 61  ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA 120

[Close]

BLAST of CsGy3G018560 vs. NCBI nr
Match: XP_004140689.1 (PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis sativus] >XP_011651255.1 PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 4.2e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 98  ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA 157
           ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA
Sbjct: 2   ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA 61

Query: 158 PKLLTKLK 166
           PKLLTKLK
Sbjct: 62  PKLLTKLK 69

[Close]

BLAST of CsGy3G018560 vs. NCBI nr
Match: XP_022942987.1 (cytochrome b-c1 complex subunit 6-like [Cucurbita moschata])

HSP 1 Score: 153.3 bits (386), Expect = 7.2e-34
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 95  IARADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDK 154
           +A ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DK
Sbjct: 64  LAMADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDK 123

Query: 155 CVAPKLLTKLK 166
           CVAPKL TK+K
Sbjct: 124 CVAPKLFTKIK 134

[Close]

BLAST of CsGy3G018560 vs. NCBI nr
Match: XP_008456103.1 (PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo] >XP_008456104.1 PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 1.2e-33
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 98  ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA 157
           ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA
Sbjct: 2   ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA 61

Query: 158 PKLLTKLK 166
           PKL TKLK
Sbjct: 62  PKLFTKLK 69

[Close]

BLAST of CsGy3G018560 vs. NCBI nr
Match: XP_022983580.1 (cytochrome b-c1 complex subunit 6-like [Cucurbita maxima])

HSP 1 Score: 151.4 bits (381), Expect = 2.7e-33
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 98  ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA 157
           ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCVA
Sbjct: 2   ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVA 61

Query: 158 PKLLTKLK 166
           PKL TK+K
Sbjct: 62  PKLFTKIK 69

[Close]

BLAST of CsGy3G018560 vs. TAIR10
Match: AT1G15120.2 (Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 124.4 bits (311), Expect = 6.5e-29
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 98  ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKC 156
           AD+E VD K+YLEE+CKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYW CIDKC
Sbjct: 69  ADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWQCIDKC 126

[Close]

BLAST of CsGy3G018560 vs. TAIR10
Match: AT2G01090.1 (Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 120.6 bits (301), Expect = 9.4e-28
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 99  DEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA 158
           +E+ VDQKRY EE+CKPKCVKPLLEYQACVKRIQ D+SGHKHCTGQYFDYW C+DKCV+
Sbjct: 3   EEDVVDQKRYFEESCKPKCVKPLLEYQACVKRIQDDESGHKHCTGQYFDYWHCVDKCVS 61

[Close]

BLAST of CsGy3G018560 vs. Swiss-Prot
Match: sp|P48504|QCR6_SOLTU (Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 7.1e-25
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 98  ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA 157
           +DEE VD K  LE +CKPKCV+ L EYQAC KR++GD+SGHKHCTGQYFDYW CIDKCVA
Sbjct: 2   SDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRVEGDESGHKHCTGQYFDYWHCIDKCVA 61

Query: 158 PKLLTKLK 166
            KL   LK
Sbjct: 62  AKLFDHLK 69

[Close]

BLAST of CsGy3G018560 vs. Swiss-Prot
Match: sp|Q1ZXP3|QCR6_DICDI (Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium discoideum OX=44689 GN=uqcrh PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-06
Identity = 24/58 (41.38%), Postives = 33/58 (56.90%), Query Frame = 0


Query: 109 LEEACKPKCVKPLLEYQACVKRIQGDDSGHK-HCTGQYFDYWSCIDKCVAPKLLTKLK 166
           ++E C   C K    YQAC  R+   +   K +C GQ+ ++  CIDKCV PKL  +LK
Sbjct: 12  IQEGCASGCEKSWSAYQACSGRVAKLEHDEKANCLGQFLEHVQCIDKCVGPKLFAQLK 69

[Close]

BLAST of CsGy3G018560 vs. TrEMBL
Match: tr|A0A0A0L6I2|A0A0A0L6I2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G212480 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 6.6e-52
Identity = 105/128 (82.03%), Postives = 105/128 (82.03%), Query Frame = 0


Query: 61  MGGFHLFGMGSSLTSIITWEQIVGLKAIAFPLVKIAR----------------------- 120
           MGGFHLFGMGSSLTSIITWEQIVGLKAIAFPLVKIAR                       
Sbjct: 1   MGGFHLFGMGSSLTSIITWEQIVGLKAIAFPLVKIARIVASLHVFSIPSIFIFHNVKDYL 60

Query: 121 ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA 166
           ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA
Sbjct: 61  ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA 120

[Close]

BLAST of CsGy3G018560 vs. TrEMBL
Match: tr|A0A1S3C350|A0A1S3C350_CUCME (Cytochrome b-c1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103496141 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.1e-34
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 98  ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA 157
           ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA
Sbjct: 2   ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVA 61

Query: 158 PKLLTKLK 166
           PKL TKLK
Sbjct: 62  PKLFTKLK 69

[Close]

BLAST of CsGy3G018560 vs. TrEMBL
Match: tr|A0A200PV59|A0A200PV59_9MAGN (Cytochrome b-c1 complex subunit 6 OS=Macleaya cordata OX=56857 GN=BVC80_1263g5 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 94  KIARADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCID 153
           K+ RADEEPVD K+YLEE+CKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCID
Sbjct: 9   KLKRADEEPVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCID 68

Query: 154 KCVAPKLLTKLK 166
           KCVAPKL  KLK
Sbjct: 69  KCVAPKLFAKLK 80

[Close]

BLAST of CsGy3G018560 vs. TrEMBL
Match: tr|A0A2I0J9N8|A0A2I0J9N8_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_026555 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 86  KAIAFPLVKIARADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQY 145
           +A  + L+   RADEEPVDQK+YLEE+CKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQY
Sbjct: 31  EASYYCLLADLRADEEPVDQKKYLEESCKPKCVKPLLEYQACVKRIQGDESGHKHCTGQY 90

Query: 146 FDYWSCIDKCVAPKLLTKLK 166
           FDYWSC+DKCVAPKL  KLK
Sbjct: 91  FDYWSCVDKCVAPKLFVKLK 110

[Close]

BLAST of CsGy3G018560 vs. TrEMBL
Match: tr|A0A0R0FX70|A0A0R0FX70_SOYBN (Cytochrome b-c1 complex subunit 6 OS=Glycine max OX=3847 GN=GLYMA_15G050500 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 96  ARADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKC 155
           +RADEEPVDQKRYLEE+CKPKCVKPLLEYQAC+KRI GDDSG KHCTGQYFDYWSCIDKC
Sbjct: 8   SRADEEPVDQKRYLEESCKPKCVKPLLEYQACIKRIHGDDSGQKHCTGQYFDYWSCIDKC 67

Query: 156 VAPKLLTKLK 166
           VAPKL TKLK
Sbjct: 68  VAPKLFTKLK 77

The following BLAST results are available for this feature:

BLAST of CsGy3G018560 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57555.1	1.0e-51	82.03	hypothetical protein Csa_3G212480 [Cucumis sativus]	[more]
XP_004140689.1	4.2e-34	100.00	PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis sativus] >XP_011651255.1 P...	[more]
XP_022942987.1	7.2e-34	92.96	cytochrome b-c1 complex subunit 6-like [Cucurbita moschata]	[more]
XP_008456103.1	1.2e-33	98.53	PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo] >XP_008456104.1 PRED...	[more]
XP_022983580.1	2.7e-33	95.59	cytochrome b-c1 complex subunit 6-like [Cucurbita maxima]	[more]

BLAST of CsGy3G018560 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15120.2	6.5e-29	89.66	Ubiquinol-cytochrome C reductase hinge protein	[more]
AT2G01090.1	9.4e-28	83.05	Ubiquinol-cytochrome C reductase hinge protein	[more]

BLAST of CsGy3G018560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P48504\|QCR6_SOLTU	7.1e-25	72.06	Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum OX=4113 PE=1 SV=2	[more]
sp\|Q1ZXP3\|QCR6_DICDI	3.3e-06	41.38	Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium discoideum OX=44689 ...	[more]

BLAST of CsGy3G018560 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6I2\|A0A0A0L6I2_CUCSA	6.6e-52	82.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G212480 PE=4 SV=1	[more]
tr\|A0A1S3C350\|A0A1S3C350_CUCME	8.1e-34	98.53	Cytochrome b-c1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103496141 PE=3 S...	[more]
tr\|A0A200PV59\|A0A200PV59_9MAGN	1.2e-32	88.89	Cytochrome b-c1 complex subunit 6 OS=Macleaya cordata OX=56857 GN=BVC80_1263g5 P...	[more]
tr\|A0A2I0J9N8\|A0A2I0J9N8_PUNGR	1.2e-32	81.25	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_026555 PE=4 SV=1	[more]
tr\|A0A0R0FX70\|A0A0R0FX70_SOYBN	1.5e-32	91.43	Cytochrome b-c1 complex subunit 6 OS=Glycine max OX=3847 GN=GLYMA_15G050500 PE=3...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008121	ubiquinol-cytochrome-c reductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c

Vocabulary: **INTERPRO**
Term	Definition
IPR003422	Cyt_b-c1_6
IPR036811	Ubol_cytC_Rdtase_hinge_dom_sf
IPR023184	Ubol_cytC_Rdtase_hinge_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
biological_process	GO:0015992	proton transport
cellular_component	GO:0005750	mitochondrial respiratory chain complex III
cellular_component	GO:0045275	respiratory chain complex III
molecular_function	GO:0008121	ubiquinol-cytochrome-c reductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G018560.1	CsGy3G018560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	PFAM	PF02320	UCR_hinge	coord: 104..165 e-value: 4.2E-21 score: 74.8
IPR036811	Ubiquinol-cytochrome C reductase hinge domain superfamily	GENE3D	G3DSA:1.10.287.20		coord: 96..165 e-value: 2.4E-21 score: 77.6
IPR036811	Ubiquinol-cytochrome C reductase hinge domain superfamily	SUPERFAMILY	SSF81531	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 98..165
IPR003422	Cytochrome b-c1 complex, subunit 6	PANTHER	PTHR15336	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN	coord: 97..165
None	No IPR available	PANTHER	PTHR15336:SF2	SUBFAMILY NOT NAMED	coord: 97..165

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G018560	Csa3G212480	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G018560	MELO3C019495	Melon (DHL92) v3.5.1	cgybmeB210
CsGy3G018560	ClCG05G009840	Watermelon (Charleston Gray)	cgybwcgB214
CsGy3G018560	CSPI03G18710	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G018560	CmaCh16G003670	Cucurbita maxima (Rimu)	cgybcmaB332
CsGy3G018560	CmaCh04G005070	Cucurbita maxima (Rimu)	cgybcmaB410
CsGy3G018560	CmoCh16G003920	Cucurbita moschata (Rifu)	cgybcmoB301
CsGy3G018560	CmoCh04G005450	Cucurbita moschata (Rifu)	cgybcmoB386
CsGy3G018560	Lsi05G001970	Bottle gourd (USVL1VR-Ls)	cgyblsiB198
CsGy3G018560	Cp4.1LG01g02120	Cucurbita pepo (Zucchini)	cgybcpeB362
CsGy3G018560	Cp4.1LG14g04110	Cucurbita pepo (Zucchini)	cgybcpeB317
CsGy3G018560	MELO3C019495.2	Melon (DHL92) v3.6.1	cgybmedB215
CsGy3G018560	CsaV3_3G018780	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G018560	Cla97C05G092230	Watermelon (97103) v2	cgybwmbB206
CsGy3G018560	Bhi01G001240	Wax gourd	cgybwgoB271
CsGy3G018560	Carg08176	Silver-seed gourd	carcgybB0380
CsGy3G018560	Carg11295	Silver-seed gourd	carcgybB0650

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G018560	Watermelon (97103) v1	cgybwmB229