CmoCh04G005450 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G005450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cytochrome b-c1 complex subunit 6 (Complex III subunit 6) (Mitochondrial hinge protein)
Location	Cmo_Chr04 : 2695876 .. 2699310 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGTGATTTGTTAAGAGCATAGGATGATTTTAAGACTAAAAATGGTACCCGACCCGACCCGAAATGGATCCGGTCCGAGAGCAAAGGAACCGGAAAGTGGACGCTTCGTCAAATTGCAATTTCTCGACTTCCAAACTAAACCTAAACAGAGTTACTGGTTCTCTCCGAGGTTCGTGCTTCTCCTCCAAGGTATGAATTCCATTTGGAGAAACACTCCGCTCGTTTGAGAATTTTATGTGTTTTTGAGCTTTAGATGAATTTTGTCCTCAGTTTATCTTTTCTGTTTTCGATTTTTATTACCGGATCCGTCTTCAATTTTCCTTGATTGGTCGATCGTCTGTTTTCGCGTTTCTGGGCGTGTTTTTATCTTTTATCAATTGGATTCTTTTACTTTGAAGTTTCGTCATCGATGGAGGATTTTGTTTGACGTGTATTTATACTACGTCGTTAGTAGTTGGTATCTGAGGGGAAAAAATTTGTGTTTGTTTGTATGATCTAACTCATCGTTTCTGATAGATATTGGAGTCTTGAATGTTGAATTGGATTTTTCCGTTTTTCTTAGAATGGAATTAAGTTTAACGAGTACCATTACCTACCTCATAGGCAGTTTAATTTGTGGGTACGTGTCATTGAACTGAAATCATTTGATTTTCCTTTGGTCAAAATGACGGAGATTCTCTTATTGTACCTTCGTTTCTGAATGCGTAACATCTGAACCTGAAATCTTATCTTAAGCGAATGATACTCTTAAAAGCTTGCGTTTGACCTGGTGGCCGGTCAATTTCAAATTTTAATGTATGTTGTGTCTGCCATTACTCAAAAGAATGCTTGAGATAGGTTTATGGACATTTTGAATCCATGGAAAAAAGTTCATTGATTTTGACGCCTGCATTTATGCACAAACAACTAATGACAATTAGCATCTATATTCTTCTTTCTCTTTTTCCGTATTGATGCTTGTTTTTATGATAATTCAAATTTGAATGTTTTCAGGTTTTCTAGCCTTCTCTTTTGCTCCAAGTCAGTGTTATTTATTAGCAATGTGAGTATTTTTTTTTAGCTTCACCATTTATTATACATTCTCCTTTTTACCCTTTTATTTCTTACACGGACGTTTTGATTGTCTGCTACATCGCTTTAGAGTTATAGCCCTGTAGTCCAGTGTTGTTTCGTTAGCATTTATTGCATTCTTATATTGCATTCATAGATTTCCAAACCATTATTTCTTCCCTCAAAAGTAGCTCATAGTGGTAAGAGGAAGAGTTATTGTTGGGAGTGGGGGGACTGTTGAGCACATACTTAGACAAATTTTTCTCTGAATCTTGATTTTTTGAACAACCACGATGACAAATATCATCTCCCTGCTGCTTCAATTGAAACTATGAAATATAGAAGTTCTGTGAATTTTACTTATTTTGGGAAGAATGAGGTTGCTGTAGATTTAGTTTCAATGTTAATCAGATGTGTTAACACTTGGAAGATGTAGCATTTTACCGGCTTAGTGATCTGATCTATATTTATGATGATTTATAAGGTTTAATAATGAGTAGGATAATTACATTCTGAATACAAATGATTAAAGCATGTCAGAATGGAAATTGAATTACTTCATATGGTTTGAATCTACTTGTACATGCATGTCTTCTTCATACTCTGTGTCTTTAACTTTCATAATGTTGAAGATTATTTGTATTTGATGTTAACTGATCTACATTTCCTTGTTTCTTGGTAATAGGGCAGATGAAGAACCCGTCGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTACTTGAATACCAGGTATGTAGTGTTTTATTGGTCTTTGTTGTGGGGGAGTAACAAGTTGTATATGTGTTTTCTTCAGTTATTTGACTTGTATTCATCATTCTCTGTTTTTTTGTTTCATGACTTAACTTTAGAAACCTGATTTCATGGATGGTTATATTTCTATTCTCATTAGAAATAATCAGTAGGCTGAAGATTGTGTATCTCTCCATTGAGTACATCCATTTATAAACTGTTAATTTCCTTGTTAACTTTGAACTTTCTTCGTGACGCATCAATTAGTACTCAGTGAGCTGTTCCTTCGAAAGAAAGGCCAGCTCGAAGGGAGTGGCATTTGTCAGAAAATTAGAGTTTAAAAAGCCGTGAAGGGTGTTGGAGTTGTGAATTGCGATGGGATTTGGTGGTGGGTGGGTTTCTTTGGTTGAAAATAATAAAATGTACAAGTGGCCACCAATCACTTAAGCTTATGGATCTGTTTGGAGAATTACCAAGGAAAGTTACAAGAGTGAAATTCAAATTTTGGTACTAGTTTTATCATTTCTCTAATGAAAGTCCAGGTTCCCACAAAAAGTTATTAGCGCAACCTTGTGGGGGAAACGCAATTGTCCTTGTGCAATTATGGTGAAAGACCCATGCCCTCTCATGCTAATGATTTAGGTCATGGAGGCAATAGTAGCTTCCTCAACAAGTTTACTTTTACAAAATGTAGCTCCTTTGAGTTGTGAATTCAACTCAATGTTGAGGACGAAACTGAAGATATATTTCTCCAAATCTGAGACATTTATGATTCACTGATTCTAGTTGATAAGCATGATGTCCTGCTTTGAGCTTCGCATTGACTCCATCACTAGTTCTTTCATTGTGAATCTGCTTCCCCGTGCATACCAGTCCCCCCCAAATTTGGAGACATATATATATTGGGATGTGCATATATTCTCTTCTATATGTGGTTTCAACTTATGACACTCCTTGTTGATGTATAGGAATGAGTAGGGGGTCTTAAATTGTAGAATTGGTATAAAGATAAGGTAAACTGATGGTTATTGTGTTTCTATGTGACAGGCATGCGTGAAGAGAATCCAAGGGGATGACAGTGGCCATAAGCACTGCACTGGACAATATTTTGATTACTGGTCTTGCGTCGACAAATGTGTGAGTATATCTTTGGTTGTTGTAGGAGGAAGTAGATTAGATTGCAGAAGAAGTTGTCCGTAAACAAGTTGAGTATAGGCAAGCTTGATCTAACTAACTTCAAAGACGCTTTTTGTTGCAGGTTGCACCAAAACTATTTACGAAAATAAAGTAAATGGAGAGTTAGGCATGTGGGGGTGTTCCTATCCTTTTGGTTGCAGCAGCATTTTTCTGATTTTTTATGCAATGCCTTTTTGTGTACTTCATCTTTGCATCTACAAAAAATGCCAAGAACTTTGCAAAAAACTATGAAGACCTTAGCCATCATCAATAAGAAAGGACGTTGGATTGTATGAACACACTTCTTCCCTTAATTTAATTTTATGATTGCTTTATTAACATTAAATGGCTGTGCTGTTTATCCCACATTGAATGCTGTTTATCAAATGGCTGTGCTGTTTGATGTTTCCAAATAATTGAATGATCAGTATGATCCTA

mRNA sequence

TAAGTGATTTGTTAAGAGCATAGGATGATTTTAAGACTAAAAATGGTACCCGACCCGACCCGAAATGGATCCGGTCCGAGAGCAAAGGAACCGGAAAGTGGACGCTTCGTCAAATTGCAATTTCTCGACTTCCAAACTAAACCTAAACAGAGTTACTGGTTCTCTCCGAGGTTCGTGCTTCTCCTCCAAGGTTTTCTAGCCTTCTCTTTTGCTCCAAGTCAGTGTTATTTATTAGCAATGGCAGATGAAGAACCCGTCGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTACTTGAATACCAGGCATGCGTGAAGAGAATCCAAGGGGATGACAGTGGCCATAAGCACTGCACTGGACAATATTTTGATTACTGGTCTTGCGTCGACAAATGTGTTGCACCAAAACTATTTACGAAAATAAAGTAAATGGAGAGTTAGGCATGTGGGGGTGTTCCTATCCTTTTGGTTGCAGCAGCATTTTTCTGATTTTTTATGCAATGCCTTTTTGTGTACTTCATCTTTGCATCTACAAAAAATGCCAAGAACTTTGCAAAAAACTATGAAGACCTTAGCCATCATCAATAAGAAAGGACGTTGGATTGTATGAACACACTTCTTCCCTTAATTTAATTTTATGATTGCTTTATTAACATTAAATGGCTGTGCTGTTTATCCCACATTGAATGCTGTTTATCAAATGGCTGTGCTGTTTGATGTTTCCAAATAATTGAATGATCAGTATGATCCTA

Coding sequence (CDS)

ATGATTTTAAGACTAAAAATGGTACCCGACCCGACCCGAAATGGATCCGGTCCGAGAGCAAAGGAACCGGAAAGTGGACGCTTCGTCAAATTGCAATTTCTCGACTTCCAAACTAAACCTAAACAGAGTTACTGGTTCTCTCCGAGGTTCGTGCTTCTCCTCCAAGGTTTTCTAGCCTTCTCTTTTGCTCCAAGTCAGTGTTATTTATTAGCAATGGCAGATGAAGAACCCGTCGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTACTTGAATACCAGGCATGCGTGAAGAGAATCCAAGGGGATGACAGTGGCCATAAGCACTGCACTGGACAATATTTTGATTACTGGTCTTGCGTCGACAAATGTGTTGCACCAAAACTATTTACGAAAATAAAGTAA

Homology

[Close]

BLAST of CmoCh04G005450 vs. Swiss-Prot
Match: QCR6_SOLTU (Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 5.4e-26
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 72  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 131
           M+DEE VD K  LE +CKPKCV+ L EYQAC KR++GD+SGHKHCTGQYFDYW C+DKCV
Sbjct: 1   MSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRVEGDESGHKHCTGQYFDYWHCIDKCV 60

Query: 132 APKLFTKIK 141
           A KLF  +K
Sbjct: 61  AAKLFDHLK 69

[Close]

BLAST of CmoCh04G005450 vs. Swiss-Prot
Match: QCR6_DICDI (Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium discoideum GN=uqcrh PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 23/58 (39.66%), Postives = 34/58 (58.62%), Query Frame = 1


Query: 84  LEEACKPKCVKPLLEYQACVKRIQGDDSGHK-HCTGQYFDYWSCVDKCVAPKLFTKIK 141
           ++E C   C K    YQAC  R+   +   K +C GQ+ ++  C+DKCV PKLF ++K
Sbjct: 12  IQEGCASGCEKSWSAYQACSGRVAKLEHDEKANCLGQFLEHVQCIDKCVGPKLFAQLK 69

[Close]

BLAST of CmoCh04G005450 vs. TrEMBL
Match: A0A0A0L6I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G212480 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.7e-34
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 72  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 131
           +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCV
Sbjct: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 119

Query: 132 APKLFTKIK 141
           APKL TK+K
Sbjct: 120 APKLLTKLK 128

[Close]

BLAST of CmoCh04G005450 vs. TrEMBL
Match: M5XBF4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017907mg PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 8.3e-34
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 1


Query: 68  YLLAMADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCV 127
           ++  MADEEPVDQK+YLEE+CKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCV
Sbjct: 49  FVFCMADEEPVDQKKYLEESCKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCV 108

Query: 128 DKCVAPKLFTKIK 141
           DKCVAPKLF K+K
Sbjct: 109 DKCVAPKLFPKLK 121

[Close]

BLAST of CmoCh04G005450 vs. TrEMBL
Match: B9H7R3_POPTR (Cytochrome b-c1 complex subunit 6 OS=Populus trichocarpa GN=POPTR_0005s21330g PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-33
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 72  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 131
           MADEEPVD K+YLEEACKPKCV+PLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCVDKCV
Sbjct: 1   MADEEPVDPKKYLEEACKPKCVRPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCVDKCV 60

Query: 132 APKLFTKIK 141
           APKLFTK+K
Sbjct: 61  APKLFTKLK 69

[Close]

BLAST of CmoCh04G005450 vs. TrEMBL
Match: C6T1W4_SOYBN (Cytochrome b-c1 complex subunit 6 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.2e-33
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 72  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 131
           MADEEPVDQKRYLEE+CKPKCVKPLLEYQAC+KRI GDDSG KHCTGQYFDYWSC+DKCV
Sbjct: 1   MADEEPVDQKRYLEESCKPKCVKPLLEYQACIKRIHGDDSGQKHCTGQYFDYWSCIDKCV 60

Query: 132 APKLFTKIK 141
           APKLFTK+K
Sbjct: 61  APKLFTKLK 69

[Close]

BLAST of CmoCh04G005450 vs. TrEMBL
Match: A0A0B2RMD7_GLYSO (Cytochrome b-c1 complex subunit 6 OS=Glycine soja GN=glysoja_005536 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.2e-33
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 72  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 131
           MADEEPVDQKRYLEE+CKPKCVKPLLEYQAC+KRI GDDSG KHCTGQYFDYWSC+DKCV
Sbjct: 1   MADEEPVDQKRYLEESCKPKCVKPLLEYQACIKRIHGDDSGQKHCTGQYFDYWSCIDKCV 60

Query: 132 APKLFTKIK 141
           APKLFTK+K
Sbjct: 61  APKLFTKLK 69

[Close]

BLAST of CmoCh04G005450 vs. TAIR10
Match: AT1G15120.2 (AT1G15120.2 Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-29
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 72  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKC 131
           MAD+E VD K+YLEE+CKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYW C+DKC
Sbjct: 68  MADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWQCIDKC 126

[Close]

BLAST of CmoCh04G005450 vs. TAIR10
Match: AT2G01090.1 (AT2G01090.1 Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-28
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1


Query: 72  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 131
           M +E+ VDQKRY EE+CKPKCVKPLLEYQACVKRIQ D+SGHKHCTGQYFDYW CVDKCV
Sbjct: 1   MPEEDVVDQKRYFEESCKPKCVKPLLEYQACVKRIQDDESGHKHCTGQYFDYWHCVDKCV 60

Query: 132 A 133
           +
Sbjct: 61  S 61

[Close]

BLAST of CmoCh04G005450 vs. NCBI nr
Match: gi|659112182|ref|XP_008456103.1| (PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 4.9e-35
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 72  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 131
           MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCV
Sbjct: 1   MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 60

Query: 132 APKLFTKIK 141
           APKLFTK+K
Sbjct: 61  APKLFTKLK 69

[Close]

BLAST of CmoCh04G005450 vs. NCBI nr
Match: gi|449445858|ref|XP_004140689.1| (PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 2.4e-34
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 72  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 131
           MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCV
Sbjct: 1   MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 60

Query: 132 APKLFTKIK 141
           APKL TK+K
Sbjct: 61  APKLLTKLK 69

[Close]

BLAST of CmoCh04G005450 vs. NCBI nr
Match: gi|700202422|gb|KGN57555.1| (hypothetical protein Csa_3G212480 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 5.4e-34
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 72  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 131
           +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCV
Sbjct: 60  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 119

Query: 132 APKLFTKIK 141
           APKL TK+K
Sbjct: 120 APKLLTKLK 128

[Close]

BLAST of CmoCh04G005450 vs. NCBI nr
Match: gi|596114380|ref|XP_007221592.1| (hypothetical protein PRUPE_ppa017907mg [Prunus persica])

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-33
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 1


Query: 68  YLLAMADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCV 127
           ++  MADEEPVDQK+YLEE+CKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCV
Sbjct: 49  FVFCMADEEPVDQKKYLEESCKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCV 108

Query: 128 DKCVAPKLFTKIK 141
           DKCVAPKLF K+K
Sbjct: 109 DKCVAPKLFPKLK 121

[Close]

BLAST of CmoCh04G005450 vs. NCBI nr
Match: gi|645223858|ref|XP_008218833.1| (PREDICTED: cytochrome b-c1 complex subunit 6 [Prunus mume])

HSP 1 Score: 150.2 bits (378), Expect = 2.7e-33
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 72  MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCV 131
           MADEEPVDQK+YLEE+CKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSCVDKCV
Sbjct: 1   MADEEPVDQKKYLEESCKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCVDKCV 60

Query: 132 APKLFTKIK 141
           APKLF K+K
Sbjct: 61  APKLFPKLK 69

The following BLAST results are available for this feature:

BLAST of CmoCh04G005450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
QCR6_SOLTU	5.4e-26	71.01	Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2	[more]
QCR6_DICDI	1.2e-06	39.66	Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium discoideum GN=uqcrh ...	[more]

BLAST of CmoCh04G005450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6I2_CUCSA	3.7e-34	94.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G212480 PE=4 SV=1	[more]
M5XBF4_PRUPE	8.3e-34	87.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017907mg PE=4 SV=1	[more]
B9H7R3_POPTR	1.9e-33	92.75	Cytochrome b-c1 complex subunit 6 OS=Populus trichocarpa GN=POPTR_0005s21330g PE...	[more]
C6T1W4_SOYBN	3.2e-33	91.30	Cytochrome b-c1 complex subunit 6 OS=Glycine max PE=2 SV=1	[more]
A0A0B2RMD7_GLYSO	3.2e-33	91.30	Cytochrome b-c1 complex subunit 6 OS=Glycine soja GN=glysoja_005536 PE=3 SV=1	[more]

BLAST of CmoCh04G005450 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15120.2	1.9e-29	88.14	Ubiquinol-cytochrome C reductase hinge protein	[more]
AT2G01090.1	2.1e-28	83.61	Ubiquinol-cytochrome C reductase hinge protein	[more]

BLAST of CmoCh04G005450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112182\|ref\|XP_008456103.1\|	4.9e-35	97.10	PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo]	[more]
gi\|449445858\|ref\|XP_004140689.1\|	2.4e-34	95.65	PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis sativus]	[more]
gi\|700202422\|gb\|KGN57555.1\|	5.4e-34	94.20	hypothetical protein Csa_3G212480 [Cucumis sativus]	[more]
gi\|596114380\|ref\|XP_007221592.1\|	1.2e-33	87.67	hypothetical protein PRUPE_ppa017907mg [Prunus persica]	[more]
gi\|645223858\|ref\|XP_008218833.1\|	2.7e-33	92.75	PREDICTED: cytochrome b-c1 complex subunit 6 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003422	Cyt_b-c1_6
IPR023184	Ubol_cytC_Rdtase_hinge_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c

Vocabulary: **Molecular Function**
Term	Definition
GO:0008121	ubiquinol-cytochrome-c reductase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0015992	proton transport
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0070469	respiratory chain
cellular_component	GO:0045275	respiratory chain complex III
cellular_component	GO:0005750	mitochondrial respiratory chain complex III
molecular_function	GO:0008121	ubiquinol-cytochrome-c reductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G005450.1	CmoCh04G005450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003422	Cytochrome b-c1 complex, subunit 6	PANTHER	PTHR15336	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN	coord: 72..140 score: 1.8
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	GENE3D	G3DSA:1.10.287.20		coord: 74..140 score: 2.1
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	PFAM	PF02320	UCR_hinge	coord: 79..140 score: 6.0
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	unknown	SSF81531	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 72..140 score: 5.1
None	No IPR available	PANTHER	PTHR15336:SF2	SUBFAMILY NOT NAMED	coord: 72..140 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G005450	CmaCh04G005070	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G005450	CmaCh16G003670	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G005450	Csa3G212480	Cucumber (Chinese Long) v2	cmocuB687
CmoCh04G005450	MELO3C019495	Melon (DHL92) v3.5.1	cmomeB683
CmoCh04G005450	ClCG05G009840	Watermelon (Charleston Gray)	cmowcgB660
CmoCh04G005450	CSPI03G18710	Wild cucumber (PI 183967)	cmocpiB698
CmoCh04G005450	Lsi05G001970	Bottle gourd (USVL1VR-Ls)	cmolsiB683
CmoCh04G005450	Cp4.1LG01g02120	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G005450	Cp4.1LG14g04110	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G005450	MELO3C019495.2	Melon (DHL92) v3.6.1	cmomedB774
CmoCh04G005450	CsaV3_3G018780	Cucumber (Chinese Long) v3	cmocucB0814
CmoCh04G005450	Cla97C05G092230	Watermelon (97103) v2	cmowmbB735
CmoCh04G005450	Bhi01G001240	Wax gourd	cmowgoB0849
CmoCh04G005450	CsGy3G018560	Cucumber (Gy14) v2	cgybcmoB386
CmoCh04G005450	Carg11295	Silver-seed gourd	carcmoB0899
CmoCh04G005450	Carg08176	Silver-seed gourd	carcmoB0514

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G005450	CmoCh16G003920	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G005450	Melon (DHL92) v3.5.1	cmomeB682
CmoCh04G005450	Watermelon (Charleston Gray)	cmowcgB658
CmoCh04G005450	Watermelon (97103) v1	cmowmB697
CmoCh04G005450	Watermelon (97103) v1	cmowmB699