Cla97C05G092230 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G092230
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Cytochrome b-c1 complex subunit 6
Location	Cla97Chr05 : 10327002 .. 10329337 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTCCATACCCTGGGTCTTTATCTTTCATAATGTTGAAGATTATTTGTATGGATATTAACTTATCTACATTTCCTTGTTTCTTTATAATATGTAGGGCGGATGAAGAACCCGTTGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAACCCAAGTGTGTGAAACCACTACTTGAATATCAGGTACAGGGTGTTTTACTGGTCTTCGTTGTGGGGAATTAATGAAGTCTTAGTGAAGTTGGATATGCTGTTTTCCTCAGTTGTTGGACTTGTATTCATTATTTATTTTTATTTTTATTTTATTTTATTTTTTTTCATGATTACTCAACTTTTAAAACTCTGATTTCATGAATGGGTATATTTCTATTCTGTTATTTGGTTAGATATTAACTGTCACTACACTAGATTGAAGATTTTGGATCTCTCCGTGTGAGCAGAGTATATCCATTTATAAATGAGTAGATTCCTGGTAGCTTCAAACCTTCTTTGTGACGCAACAGTTAGTATTCAGTGAACTGTCTCTCTGGAAAAAAAGCCCAATTAGGGAGTGCATTGTTAGAAAATTTGAATTTGAAAAGTGGCAAAGGTTGTTGGTGTTGTGGATAACAATTGGATTGATGGTAAAACACACAAGGAGCCACCGATCACTAAGCCTTATAAGAATAACGAAGCTTAGTTACATGAGTGAGATTTGATATATGGGTACTTCCCTACAAGACTTGGGCTGGGCTGGCTGGTCATGCTGAATACTATCACCCACCAAGGGAGGGGGGAACAGAGGGATAGAGGGTAAAGGAAAAAAAAAAAAGGGAAGGAAGTTACAATTTTTAAATGGATTTGGCTCCACCTTTGCTTACGATTTTTCTTTTGGAAAAAACCAATGGACGTACTTGGTCCCCATCAATCAAGCCACACCTTGAAGATAAAGTCTATCTTTGGGCTGTACAATGTATGGAACATTATTTGGATATTGTGAGCATATTACTAATTAACTAATAAGTGGTTATAAGTAAAGGAATTAAAAATAGAGAAAAGAGAATGAAGCCACTCAAATGCTAAGTAGCACCATTTAAATTCTCTTTCTATTAGTAATTCCAACAGCATATTTCATCATTTCTGGGTCCTATCTTGCCATAAAAGTAACAGTAAGAAAGTTGTTACTGCAATCTGTTTTATTCTTTTGGATGGGAATCATTTTCGCCTAACAAGCTTAGTTTTGGTCTCCTTTTGTTGGGGTCTTTTGGTATGCTCTTGTGTATTCTTTCCTTAAGAAGCCCAGTTTTCGGCAATTGTTATTAGCGTGACTTCACAGTGAACACAATTGGCCCTGTGCAATTATTGTGAAGGATCCTTGCCTATCATGCTAATCATTAGTCTTCTTTTTCTGATATCCGTGATGTTTCGGGCCAGCTTACGCACGCACGACTAATCTCACGGGACAACTCGCCTGACCCTACAACATTTGGGTGTCAAGGAAACTCGTAAGATATTAAATCCTACATAGGTGGCCACCATGGATTGAACCCATGATCACTTAGCTATTTATTGAGACTATGTCTCCTTTTATACCACTAAGCCAACCCATGATGGTTTGCTAATCATTGGTCATGAAAGCAACAATCGTGTTCCTTTACAAATTGCTTTTACGAAATGTAGCTTCCTTCTGTGAATTCAAATCAACATTGAGGACAAAGATATCTTTTCTCTAAAAGTTGAGACATCTCAAGTTTCACTGATTTTAGTTGATACTAGGCTTTGGGGTTCACGTTGACTTGGTCACTAGACATCCTTTTAATGTGATGTTGATGAATCTTAACAAATGCGTTGGACTTCTTTCCCCTAGGATACTAATCCTCACCAAATTTGGAGAATTATTTATTTTGATGTGCATATAGGATGTGTTTTCCCTGAAAAGTGGCACAATTTATTTCGTCTCTCATATCTGGGTTTCAGCTGATGACTTGTTGGTATATGGGAACGAAGAGGGTCGTAATATTTTACTTTGTTTATAATGTGTGAGCAGATTCAAATTCTATCATTAGTATATAAAGATAAGGTAAAATGATGGTTATATTGTCTTTCCATGTCATAGGCGTGCGTGAAGAGAATTCAAGGGGATGACAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCATTGACAAATGTGTAAGTAACTTTTGGTTTTTATAGAAAGTAAATTGCAGAAAAAGTTTATACAAATGTGTACATAAACAACTTTAATTTTTTTAACCTTGAACTAACTTCAAAAGACACTTTCTTGCAGGTTGCACCAAAACTATTTACGAAACTTAAGTAA

mRNA sequence

ATGTCTTTTCCATACCCTGGGTCTTTATCTTTCATAATGTTGAAGATTATTTGTATGGATATTAACTTATCTACATTTCCTTGTTTCTTTATAATATGTAGGGCGGATGAAGAACCCGTTGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAACCCAAGTGTGTGAAACCACTACTTGAATATCAGGATGTGTTTTCCCTGAAAAGTGGCACAATTTATTTCGTCTCTCATATCTGGGTTTCAGCTGATGACTTGTTGGCGTGCGTGAAGAGAATTCAAGGGGATGACAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCATTGACAAATGTGTTGCACCAAAACTATTTACGAAACTTAAGTAA

Coding sequence (CDS)

ATGTCTTTTCCATACCCTGGGTCTTTATCTTTCATAATGTTGAAGATTATTTGTATGGATATTAACTTATCTACATTTCCTTGTTTCTTTATAATATGTAGGGCGGATGAAGAACCCGTTGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAACCCAAGTGTGTGAAACCACTACTTGAATATCAGGATGTGTTTTCCCTGAAAAGTGGCACAATTTATTTCGTCTCTCATATCTGGGTTTCAGCTGATGACTTGTTGGCGTGCGTGAAGAGAATTCAAGGGGATGACAGTGGTCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCATTGACAAATGTGTTGCACCAAAACTATTTACGAAACTTAAGTAA

Protein sequence

MSFPYPGSLSFIMLKIICMDINLSTFPCFFIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK

Homology

[Close]

BLAST of Cla97C05G092230 vs. NCBI nr
Match: XP_022942987.1 (cytochrome b-c1 complex subunit 6-like [Cucurbita moschata])

HSP 1 Score: 143.3 bits (360), Expect = 5.7e-31
Identity = 66/97 (68.04%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 30  FIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACV 89
           +++  ADEEPVDQKRYLEEACKPKCVKPLLEYQ                        ACV
Sbjct: 62  YLLAMADEEPVDQKRYLEEACKPKCVKPLLEYQ------------------------ACV 121

Query: 90  KRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK 127
           KRIQGDDSGHKHCTGQYFDYWSC+DKCVAPKLFTK+K
Sbjct: 122 KRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK 134

[Close]

BLAST of Cla97C05G092230 vs. NCBI nr
Match: XP_008456103.1 (PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo] >XP_008456104.1 PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 9.7e-31
Identity = 68/92 (73.91%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 35  ADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQG 94
           ADEEPVDQKRYLEEACKPKCVKPLLEYQ                        ACVKRIQG
Sbjct: 2   ADEEPVDQKRYLEEACKPKCVKPLLEYQ------------------------ACVKRIQG 61

Query: 95  DDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK 127
           DDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
Sbjct: 62  DDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK 69

[Close]

BLAST of Cla97C05G092230 vs. NCBI nr
Match: ONI35920.1 (hypothetical protein PRUPE_1G560700 [Prunus persica])

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 65/97 (67.01%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 30  FIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACV 89
           F+ C ADEEPVDQK+YLEE+CKPKCVKPLLEYQ                        ACV
Sbjct: 49  FVFCMADEEPVDQKKYLEESCKPKCVKPLLEYQ------------------------ACV 108

Query: 90  KRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK 127
           KRIQGD+SGHKHCTGQYFDYWSC+DKCVAPKLF KLK
Sbjct: 109 KRIQGDESGHKHCTGQYFDYWSCVDKCVAPKLFPKLK 121

[Close]

BLAST of Cla97C05G092230 vs. NCBI nr
Match: KGN57555.1 (hypothetical protein Csa_3G212480 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 2.2e-30
Identity = 74/126 (58.73%), Postives = 83/126 (65.87%), Query Frame = 0


Query: 8   SLSFIMLKI--ICMDINLSTFPCFFIICR-----ADEEPVDQKRYLEEACKPKCVKPLLE 67
           +++F ++KI  I   +++ + P  FI        ADEEPVDQKRYLEEACKPKCVKPLLE
Sbjct: 27  AIAFPLVKIARIVASLHVFSIPSIFIFHNVKDYLADEEPVDQKRYLEEACKPKCVKPLLE 86

Query: 68  YQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPK 127
           YQ                        ACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPK
Sbjct: 87  YQ------------------------ACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPK 128

[Close]

BLAST of Cla97C05G092230 vs. NCBI nr
Match: XP_022983580.1 (cytochrome b-c1 complex subunit 6-like [Cucurbita maxima])

HSP 1 Score: 141.4 bits (355), Expect = 2.2e-30
Identity = 66/92 (71.74%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 35  ADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQG 94
           ADEEPVDQKRYLEEACKPKCVKPLLEYQ                        ACVKRIQG
Sbjct: 2   ADEEPVDQKRYLEEACKPKCVKPLLEYQ------------------------ACVKRIQG 61

Query: 95  DDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK 127
           DDSGHKHCTGQYFDYWSC+DKCVAPKLFTK+K
Sbjct: 62  DDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK 69

[Close]

BLAST of Cla97C05G092230 vs. TrEMBL
Match: tr|A0A1S3C350|A0A1S3C350_CUCME (Cytochrome b-c1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103496141 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.4e-31
Identity = 68/92 (73.91%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 35  ADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQG 94
           ADEEPVDQKRYLEEACKPKCVKPLLEYQ                        ACVKRIQG
Sbjct: 2   ADEEPVDQKRYLEEACKPKCVKPLLEYQ------------------------ACVKRIQG 61

Query: 95  DDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK 127
           DDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK
Sbjct: 62  DDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK 69

[Close]

BLAST of Cla97C05G092230 vs. TrEMBL
Match: tr|M5XBF4|M5XBF4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G560700 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.4e-31
Identity = 65/97 (67.01%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 30  FIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACV 89
           F+ C ADEEPVDQK+YLEE+CKPKCVKPLLEYQ                        ACV
Sbjct: 49  FVFCMADEEPVDQKKYLEESCKPKCVKPLLEYQ------------------------ACV 108

Query: 90  KRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK 127
           KRIQGD+SGHKHCTGQYFDYWSC+DKCVAPKLF KLK
Sbjct: 109 KRIQGDESGHKHCTGQYFDYWSCVDKCVAPKLFPKLK 121

[Close]

BLAST of Cla97C05G092230 vs. TrEMBL
Match: tr|A0A0A0L6I2|A0A0A0L6I2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G212480 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-30
Identity = 74/126 (58.73%), Postives = 83/126 (65.87%), Query Frame = 0


Query: 8   SLSFIMLKI--ICMDINLSTFPCFFIICR-----ADEEPVDQKRYLEEACKPKCVKPLLE 67
           +++F ++KI  I   +++ + P  FI        ADEEPVDQKRYLEEACKPKCVKPLLE
Sbjct: 27  AIAFPLVKIARIVASLHVFSIPSIFIFHNVKDYLADEEPVDQKRYLEEACKPKCVKPLLE 86

Query: 68  YQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPK 127
           YQ                        ACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPK
Sbjct: 87  YQ------------------------ACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPK 128

[Close]

BLAST of Cla97C05G092230 vs. TrEMBL
Match: tr|A0A2I0J9N8|A0A2I0J9N8_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_026555 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.2e-30
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 24  STFPCFFIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSAD 83
           +++ C     RADEEPVDQK+YLEE+CKPKCVKPLLEYQ                     
Sbjct: 32  ASYYCLLADLRADEEPVDQKKYLEESCKPKCVKPLLEYQ--------------------- 91

Query: 84  DLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK 127
              ACVKRIQGD+SGHKHCTGQYFDYWSC+DKCVAPKLF KLK
Sbjct: 92  ---ACVKRIQGDESGHKHCTGQYFDYWSCVDKCVAPKLFVKLK 110

[Close]

BLAST of Cla97C05G092230 vs. TrEMBL
Match: tr|A0A0R0FX70|A0A0R0FX70_SOYBN (Cytochrome b-c1 complex subunit 6 OS=Glycine max OX=3847 GN=GLYMA_15G050500 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-29
Identity = 65/93 (69.89%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 34  RADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQ 93
           RADEEPVDQKRYLEE+CKPKCVKPLLEYQ                        AC+KRI 
Sbjct: 9   RADEEPVDQKRYLEESCKPKCVKPLLEYQ------------------------ACIKRIH 68

Query: 94  GDDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK 127
           GDDSG KHCTGQYFDYWSCIDKCVAPKLFTKLK
Sbjct: 69  GDDSGQKHCTGQYFDYWSCIDKCVAPKLFTKLK 77

[Close]

BLAST of Cla97C05G092230 vs. Swiss-Prot
Match: sp|P48504|QCR6_SOLTU (Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 5.6e-22
Identity = 50/92 (54.35%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 35  ADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQG 94
           +DEE VD K  LE +CKPKCV+ L EYQ                        AC KR++G
Sbjct: 2   SDEEVVDPKATLEVSCKPKCVRQLKEYQ------------------------ACTKRVEG 61

Query: 95  DDSGHKHCTGQYFDYWSCIDKCVAPKLFTKLK 127
           D+SGHKHCTGQYFDYW CIDKCVA KLF  LK
Sbjct: 62  DESGHKHCTGQYFDYWHCIDKCVAAKLFDHLK 69

[Close]

BLAST of Cla97C05G092230 vs. TAIR10
Match: AT1G15120.2 (Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-25
Identity = 54/96 (56.25%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 21  INLSTFPCFFIICRADEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWV 80
           +++S F        AD+E VD K+YLEE+CKPKCVKPLLEYQ                  
Sbjct: 55  LSISVFSFQLTFNMADDEVVDPKKYLEESCKPKCVKPLLEYQ------------------ 114

Query: 81  SADDLLACVKRIQGDDSGHKHCTGQYFDYWSCIDKC 117
                 ACVKRIQGDDSGHKHCTGQYFDYW CIDKC
Sbjct: 115 ------ACVKRIQGDDSGHKHCTGQYFDYWQCIDKC 126

[Close]

BLAST of Cla97C05G092230 vs. TAIR10
Match: AT2G01090.1 (Ubiquinol-cytochrome C reductase hinge protein)

HSP 1 Score: 108.2 bits (269), Expect = 3.7e-24
Identity = 49/83 (59.04%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 36  DEEPVDQKRYLEEACKPKCVKPLLEYQDVFSLKSGTIYFVSHIWVSADDLLACVKRIQGD 95
           +E+ VDQKRY EE+CKPKCVKPLLEYQ                        ACVKRIQ D
Sbjct: 3   EEDVVDQKRYFEESCKPKCVKPLLEYQ------------------------ACVKRIQDD 61

Query: 96  DSGHKHCTGQYFDYWSCIDKCVA 119
           +SGHKHCTGQYFDYW C+DKCV+
Sbjct: 63  ESGHKHCTGQYFDYWHCVDKCVS 61

The following BLAST results are available for this feature:

BLAST of Cla97C05G092230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942987.1	5.7e-31	68.04	cytochrome b-c1 complex subunit 6-like [Cucurbita moschata]	[more]
XP_008456103.1	9.7e-31	73.91	PREDICTED: cytochrome b-c1 complex subunit 6 [Cucumis melo] >XP_008456104.1 PRED...	[more]
ONI35920.1	1.3e-30	67.01	hypothetical protein PRUPE_1G560700 [Prunus persica]	[more]
KGN57555.1	2.2e-30	58.73	hypothetical protein Csa_3G212480 [Cucumis sativus]	[more]
XP_022983580.1	2.2e-30	71.74	cytochrome b-c1 complex subunit 6-like [Cucurbita maxima]	[more]

BLAST of Cla97C05G092230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C350\|A0A1S3C350_CUCME	6.4e-31	73.91	Cytochrome b-c1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103496141 PE=3 S...	[more]
tr\|M5XBF4\|M5XBF4_PRUPE	8.4e-31	67.01	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G560700 PE=4 SV=1	[more]
tr\|A0A0A0L6I2\|A0A0A0L6I2_CUCSA	1.4e-30	58.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G212480 PE=4 SV=1	[more]
tr\|A0A2I0J9N8\|A0A2I0J9N8_PUNGR	3.2e-30	63.11	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_026555 PE=4 SV=1	[more]
tr\|A0A0R0FX70\|A0A0R0FX70_SOYBN	1.2e-29	69.89	Cytochrome b-c1 complex subunit 6 OS=Glycine max OX=3847 GN=GLYMA_15G050500 PE=3...	[more]

BLAST of Cla97C05G092230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P48504\|QCR6_SOLTU	5.6e-22	54.35	Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum OX=4113 PE=1 SV=2	[more]

BLAST of Cla97C05G092230 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15120.2	1.5e-25	56.25	Ubiquinol-cytochrome C reductase hinge protein	[more]
AT2G01090.1	3.7e-24	59.04	Ubiquinol-cytochrome C reductase hinge protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008121	ubiquinol-cytochrome-c reductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c

Vocabulary: **INTERPRO**
Term	Definition
IPR003422	Cyt_b-c1_6
IPR023184	Ubol_cytC_Rdtase_hinge_dom
IPR036811	Ubol_cytC_Rdtase_hinge_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0015992	proton transport
biological_process	GO:0009060	aerobic respiration
cellular_component	GO:0016020	membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0070469	respiratory chain
cellular_component	GO:0045275	respiratory chain complex III
cellular_component	GO:0005750	mitochondrial respiratory chain complex III
molecular_function	GO:0008121	ubiquinol-cytochrome-c reductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G092230.1	Cla97C05G092230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036811	Ubiquinol-cytochrome C reductase hinge domain superfamily	GENE3D	G3DSA:1.10.287.20		coord: 76..126 e-value: 1.3E-13 score: 52.8
IPR036811	Ubiquinol-cytochrome C reductase hinge domain superfamily	SUPERFAMILY	SSF81531	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 87..126
IPR036811	Ubiquinol-cytochrome C reductase hinge domain superfamily	SUPERFAMILY	SSF81531	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 35..63
IPR023184	Ubiquinol-cytochrome C reductase hinge domain	PFAM	PF02320	UCR_hinge	coord: 85..126 e-value: 1.1E-15 score: 57.5
None	No IPR available	PANTHER	PTHR15336:SF2	SUBFAMILY NOT NAMED	coord: 34..62 coord: 87..126
IPR003422	Cytochrome b-c1 complex, subunit 6	PANTHER	PTHR15336	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN	coord: 34..62
IPR003422	Cytochrome b-c1 complex, subunit 6	PANTHER	PTHR15336	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN	coord: 87..126

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G092230	Csa3G212480	Cucumber (Chinese Long) v2	cuwmbB215
Cla97C05G092230	MELO3C019495	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G092230	ClCG05G009840	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G092230	CSPI03G18710	Wild cucumber (PI 183967)	cpiwmbB221
Cla97C05G092230	CmaCh04G005070	Cucurbita maxima (Rimu)	cmawmbB763
Cla97C05G092230	CmaCh16G003670	Cucurbita maxima (Rimu)	cmawmbB347
Cla97C05G092230	CmoCh16G003920	Cucurbita moschata (Rifu)	cmowmbB332
Cla97C05G092230	CmoCh04G005450	Cucurbita moschata (Rifu)	cmowmbB735
Cla97C05G092230	Lsi05G001970	Bottle gourd (USVL1VR-Ls)	lsiwmbB329
Cla97C05G092230	CsGy3G018560	Cucumber (Gy14) v2	cgybwmbB206
Cla97C05G092230	MELO3C019495.2	Melon (DHL92) v3.6.1	medwmbB424
Cla97C05G092230	Carg08176	Silver-seed gourd	carwmbB0396
Cla97C05G092230	Carg11295	Silver-seed gourd	carwmbB0681
Cla97C05G092230	CsaV3_3G018780	Cucumber (Chinese Long) v3	cucwmbB217
Cla97C05G092230	Bhi01G001240	Wax gourd	wgowmbB179

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G092230	Silver-seed gourd	carwmbB0395
Cla97C05G092230	Watermelon (97103) v1	wmwmbB206