Lsi05G001640 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G001640
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Benzoate 1,2-dioxygenase electron transfer component
Location	chr05 : 2379460 .. 2379891 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGCCTCATCACCACCACTTCCTTCCTCTGGTCCCAGCCACCGGCCGCGACGTTGAGGCTGGTGCCTAATGTGGGTGAGCGCTTGTTCGGGTTGCAGAAGGGAGGGAGCCGAGGCGGGCGAGTGACGGCGATGGCAACATACAAGGTGAAGCTAATAACACCAAGTGGAGAGAAAGTTGTCGAGTGTCCGGATAACGAGTACATTCTAGATGCGGCGGAGAACGATGGGATCGACCTTCCATTCTCATGTAGAGCAGGAGCATGTTCTGCTTGTGTAGGAAAATTGAAATCAGGGAAAGTGGATCAGTCAGATGTTAGCTTCCTTGATGAAGATCAGATTGCACAAGGCTGGGTTCTTACTTGTTTGGCTACTCCTCTCTCTGATGTTGTTATTGAGACAGATAAGGAGGAGGAATTTTCAAGTTAA

mRNA sequence

ATGGCCAGCCTCATCACCACCACTTCCTTCCTCTGGTCCCAGCCACCGGCCGCGACGTTGAGGCTGGTGCCTAATGTGGGTGAGCGCTTGTTCGGGTTGCAGAAGGGAGGGAGCCGAGGCGGGCGAGTGACGGCGATGGCAACATACAAGGTGAAGCTAATAACACCAAGTGGAGAGAAAGTTGTCGAGTGTCCGGATAACGAGTACATTCTAGATGCGGCGGAGAACGATGGGATCGACCTTCCATTCTCATGTAGAGCAGGAGCATGTTCTGCTTGTGTAGGAAAATTGAAATCAGGGAAAGTGGATCAGTCAGATGTTAGCTTCCTTGATGAAGATCAGATTGCACAAGGCTGGGTTCTTACTTGTTTGGCTACTCCTCTCTCTGATGTTGTTATTGAGACAGATAAGGAGGAGGAATTTTCAAGTTAA

Coding sequence (CDS)

ATGGCCAGCCTCATCACCACCACTTCCTTCCTCTGGTCCCAGCCACCGGCCGCGACGTTGAGGCTGGTGCCTAATGTGGGTGAGCGCTTGTTCGGGTTGCAGAAGGGAGGGAGCCGAGGCGGGCGAGTGACGGCGATGGCAACATACAAGGTGAAGCTAATAACACCAAGTGGAGAGAAAGTTGTCGAGTGTCCGGATAACGAGTACATTCTAGATGCGGCGGAGAACGATGGGATCGACCTTCCATTCTCATGTAGAGCAGGAGCATGTTCTGCTTGTGTAGGAAAATTGAAATCAGGGAAAGTGGATCAGTCAGATGTTAGCTTCCTTGATGAAGATCAGATTGCACAAGGCTGGGTTCTTACTTGTTTGGCTACTCCTCTCTCTGATGTTGTTATTGAGACAGATAAGGAGGAGGAATTTTCAAGTTAA

Protein sequence

MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEEFSS

Homology

[Close]

BLAST of Lsi05G001640 vs. Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.8e-43
Identity = 87/141 (61.70%), Postives = 107/141 (75.89%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGE 60
           ++S I  TSF+   P   +LR +P+   + LFGL+ G +RGGRVTAMATYKVK ITP GE
Sbjct: 6   LSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGE 65

Query: 61  KVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGW 120
             VEC D+ Y+LDAAE  GIDLP+SCRAG+CS+C GK+ SG VDQSD SFLD++QI +G+
Sbjct: 66  LEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGF 125

Query: 121 VLTCLATPLSDVVIETDKEEE 141
           VLTC A P SDV IET KEE+
Sbjct: 126 VLTCAAYPTSDVTIETHKEED 146

[Close]

BLAST of Lsi05G001640 vs. Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.2e-42
Identity = 84/140 (60.00%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGE 60
           ++S I +TSFL  Q    +LR +P    + LFGL+   +RGGRVTAMATYKVK ITP GE
Sbjct: 6   LSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGE 65

Query: 61  KVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGW 120
           + VEC ++ Y+LDAAE  G+DLP+SCRAG+CS+C GK+ SG +DQSD SFLD++Q+++G+
Sbjct: 66  QEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGY 125

Query: 121 VLTCLATPLSDVVIETDKEE 140
           VLTC+A P SDVVIET KEE
Sbjct: 126 VLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of Lsi05G001640 vs. Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.7e-41
Identity = 83/143 (58.04%), Postives = 106/143 (74.13%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEK 60
           ++  + +TSFL  +P   +L+ + NVGE LFGL+ G  R GR+T MA+YKVKLITP G  
Sbjct: 4   ISGTMISTSFLPRKPAVTSLKAISNVGEALFGLKSG--RNGRITCMASYKVKLITPEGPI 63

Query: 61  VVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWV 120
             ECPD+ YILD AE +G DLP+SCRAG+CS+C GK+ +G VDQSD +FLDEDQ A G+V
Sbjct: 64  EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFV 123

Query: 121 LTCLATPLSDVVIETDKEEEFSS 144
           LTC+A P  DV IET KEEE ++
Sbjct: 124 LTCVAYPKGDVTIETHKEEELTA 144

[Close]

BLAST of Lsi05G001640 vs. Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.7e-41
Identity = 84/137 (61.31%), Postives = 102/137 (74.45%), Query Frame = 1


Query: 7   TTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVECPD 66
           +T+F    PP  T  L  NVG  LFGL+   SR GRVTAMA YKV L+TP G++ +ECPD
Sbjct: 14  STAFAPKTPPM-TAALPTNVGRALFGLKSSASR-GRVTAMAAYKVTLVTPEGKQELECPD 73

Query: 67  NEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLAT 126
           + YILDAAE  GIDLP+SCRAG+CS+C GK+ SG V+Q D SFLD+DQI +GWVLTC+A 
Sbjct: 74  DVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAY 133

Query: 127 PLSDVVIETDKEEEFSS 144
           P  DV IET KEEE ++
Sbjct: 134 PTGDVTIETHKEEELTA 148

[Close]

BLAST of Lsi05G001640 vs. Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.5e-41
Identity = 80/140 (57.14%), Postives = 105/140 (75.00%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEK 60
           +++ + +TSF+  +P   +L+ +PNVGE LFGL+   + GG+VT MA+YKVKLITP G  
Sbjct: 4   VSATMISTSFMPRKPAVTSLKPIPNVGEALFGLKS--ANGGKVTCMASYKVKLITPDGPI 63

Query: 61  VVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWV 120
             +CPDN YILD AE  G DLP+SCRAG+CS+C GK+  G VDQ+D +FLD+DQ+ +GWV
Sbjct: 64  EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWV 123

Query: 121 LTCLATPLSDVVIETDKEEE 141
           LTC+A P SDV IET KE E
Sbjct: 124 LTCVAYPQSDVTIETHKEAE 141

[Close]

BLAST of Lsi05G001640 vs. TrEMBL
Match: A0A067EGN2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032230mg PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 6.3e-45
Identity = 87/142 (61.27%), Postives = 114/142 (80.28%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEK 60
           ++S + +TSF+ ++P   +L+ +PN+G+ LFGL+   +RGGRV AMATYKVKLITP GE+
Sbjct: 4   LSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQ 63

Query: 61  VVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWV 120
            +ECPD+ YILDAAE+ GIDLP+SCRAG+CS C GK+ SG VDQSD SFL++DQI  G+V
Sbjct: 64  EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYV 123

Query: 121 LTCLATPLSDVVIETDKEEEFS 143
           LTC+A P SDV +ET K+EE S
Sbjct: 124 LTCVAYPTSDVTVETHKDEEMS 145

[Close]

BLAST of Lsi05G001640 vs. TrEMBL
Match: F8SPG7_CAMSI (Chloroplast ferredoxin I OS=Camellia sinensis PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 6.3e-45
Identity = 92/143 (64.34%), Postives = 112/143 (78.32%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEK 60
           ++S + +TSFL  Q P  +LR +PNVG+ LFG++  G RGGRVTAMA YKVKL+TP G +
Sbjct: 7   LSSTMVSTSFLQRQQPVTSLRSLPNVGQALFGVK--GGRGGRVTAMAMYKVKLLTPEGPQ 66

Query: 61  VVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWV 120
             ECPD+ YILD AE  GIDLP+SCRAG+CS+C GKL  GKVDQSD SFLD+DQ+  GWV
Sbjct: 67  EFECPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKLTGGKVDQSDGSFLDDDQMDGGWV 126

Query: 121 LTCLATPLSDVVIETDKEEEFSS 144
           LTC+A P SDVVIET KEEE ++
Sbjct: 127 LTCVAYPQSDVVIETHKEEELTA 147

[Close]

BLAST of Lsi05G001640 vs. TrEMBL
Match: A0A067L2U1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04972 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-43
Identity = 88/140 (62.86%), Postives = 113/140 (80.71%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEK 60
           ++S + +TSF   QP   +LR +PNVG+ LFGL+   SRGG+  AMA+YKVKL+TP GEK
Sbjct: 6   LSSAMVSTSFTRRQP-VTSLRALPNVGQALFGLKS--SRGGKFKAMASYKVKLLTPEGEK 65

Query: 61  VVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWV 120
           V+ECPD+ YILDAAE  G+DLP+SCRAG+CS+C GK+  G+VDQSD SFLD++Q+ +GWV
Sbjct: 66  VIECPDDVYILDAAEEAGVDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQMEEGWV 125

Query: 121 LTCLATPLSDVVIETDKEEE 141
           LTC+A P SDVVIET KEE+
Sbjct: 126 LTCVAYPTSDVVIETHKEED 142

[Close]

BLAST of Lsi05G001640 vs. TrEMBL
Match: A0A067E882_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032269mg PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-43
Identity = 86/142 (60.56%), Postives = 114/142 (80.28%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEK 60
           ++S + +TSF+ S+P A +L+ +PN+G+ +FGL+   +RGGRV AMATYKVKLITP GE+
Sbjct: 4   LSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLK--ANRGGRVVAMATYKVKLITPGGEE 63

Query: 61  VVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWV 120
            + CPD+ +ILDAAE  G+DLP+SCRAGACS+C GK+ SG VDQS+ SFLD+DQ+ +G+V
Sbjct: 64  EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFV 123

Query: 121 LTCLATPLSDVVIETDKEEEFS 143
           LTC A P SDV IET KEEE +
Sbjct: 124 LTCAAYPTSDVTIETHKEEELA 143

[Close]

BLAST of Lsi05G001640 vs. TrEMBL
Match: V4T673_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002793mg PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-43
Identity = 86/142 (60.56%), Postives = 114/142 (80.28%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEK 60
           ++S + +TSF+ S+P A +L+ +PN+G+ +FGL+   +RGGRV AMATYKVKLITP GE+
Sbjct: 4   LSSAMVSTSFIRSKPTATSLKAMPNMGQAMFGLK--ANRGGRVVAMATYKVKLITPGGEE 63

Query: 61  VVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWV 120
            + CPD+ +ILDAAE  G+DLP+SCRAGACS+C GK+ SG VDQS+ SFLD+DQ+ +G+V
Sbjct: 64  EINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFV 123

Query: 121 LTCLATPLSDVVIETDKEEEFS 143
           LTC A P SDV IET KEEE +
Sbjct: 124 LTCAAYPTSDVTIETHKEEELA 143

[Close]

BLAST of Lsi05G001640 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 175.6 bits (444), Expect = 2.1e-44
Identity = 87/141 (61.70%), Postives = 107/141 (75.89%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGE 60
           ++S I  TSF+   P   +LR +P+   + LFGL+ G +RGGRVTAMATYKVK ITP GE
Sbjct: 6   LSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGE 65

Query: 61  KVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGW 120
             VEC D+ Y+LDAAE  GIDLP+SCRAG+CS+C GK+ SG VDQSD SFLD++QI +G+
Sbjct: 66  LEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGF 125

Query: 121 VLTCLATPLSDVVIETDKEEE 141
           VLTC A P SDV IET KEE+
Sbjct: 126 VLTCAAYPTSDVTIETHKEED 146

[Close]

BLAST of Lsi05G001640 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 172.6 bits (436), Expect = 1.8e-43
Identity = 84/140 (60.00%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVG-ERLFGLQKGGSRGGRVTAMATYKVKLITPSGE 60
           ++S I +TSFL  Q    +LR +P    + LFGL+   +RGGRVTAMATYKVK ITP GE
Sbjct: 6   LSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGE 65

Query: 61  KVVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGW 120
           + VEC ++ Y+LDAAE  G+DLP+SCRAG+CS+C GK+ SG +DQSD SFLD++Q+++G+
Sbjct: 66  QEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGY 125

Query: 121 VLTCLATPLSDVVIETDKEE 140
           VLTC+A P SDVVIET KEE
Sbjct: 126 VLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of Lsi05G001640 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-29
Identity = 64/113 (56.64%), Postives = 79/113 (69.91%), Query Frame = 1


Query: 29  RLFGLQKGGSRGGRVTAMATYKVKLITPSG-EKVVECPDNEYILDAAENDGIDLPFSCRA 88
           R FGL+   + GG  T  A YKVKL+ P G E   E  D++YILDAAE  G+DLP+SCRA
Sbjct: 42  RSFGLKCSANSGG-ATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRA 101

Query: 89  GACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEE 141
           GACS C G++ SG VDQSD SFL++  + +G+VLTC+A P SD VI T KE E
Sbjct: 102 GACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETE 153

[Close]

BLAST of Lsi05G001640 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-25
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 1


Query: 31  FGLQKGGSRGGRVTAMATYKVKLITPSGEKV-VECPDNEYILDAAENDGIDLPFSCRAGA 90
           FGL       G+V A  + KVKLI+P GE+  +E  ++  IL++AEN G++LP+SCR+G 
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 91  CSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCLATPLSDVVIETDKEEE 141
           C  C GKL SGKVDQS  SFL+E+QI +G++LTC+A PL D V+ T K+ +
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSD 146

[Close]

BLAST of Lsi05G001640 vs. TAIR10
Match: AT1G32550.2 (AT1G32550.2 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 1


Query: 66  DNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSD------------VSFLDED 125
           +++YIL +AE+  I LPF+CR G C++C  ++KSG++ Q              +S LD  
Sbjct: 75  EDQYILHSAESQNISLPFACRHGCCTSCAVRVKSGELRQPQALGISAELKSQRISSLDLI 134

Query: 126 QIAQ----GWVLTCLATPLSDVVIETDKEEE 141
           Q  +    G+ L C+  P SD+ +ET  E+E
Sbjct: 135 QCQKTYLTGYALLCVGFPTSDLEVETQDEDE 165

[Close]

BLAST of Lsi05G001640 vs. NCBI nr
Match: gi|659112425|ref|XP_008456215.1| (PREDICTED: ferredoxin-like [Cucumis melo])

HSP 1 Score: 202.6 bits (514), Expect = 4.6e-49
Identity = 100/139 (71.94%), Postives = 117/139 (84.17%), Query Frame = 1


Query: 5   ITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEKVVEC 64
           ITTTSFL  Q    TLR  PNVGE LFGLQK   RG RVTAMATYKVKLITPSG K ++C
Sbjct: 6   ITTTSFLRYQLLTTTLRSAPNVGECLFGLQK---RGSRVTAMATYKVKLITPSGVKEIKC 65

Query: 65  PDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWVLTCL 124
           PD+ YIL+ AE++G+DLP+SCRAGACS+C GKL SGKVDQS++SFLD+DQIA+GWV+ C+
Sbjct: 66  PDDNYILNVAEDEGLDLPYSCRAGACSSCAGKLISGKVDQSNISFLDDDQIAKGWVINCM 125

Query: 125 ATPLSDVVIETDKEEEFSS 144
           A PLSDVVIET KEEEF++
Sbjct: 126 AYPLSDVVIETHKEEEFTN 141

[Close]

BLAST of Lsi05G001640 vs. NCBI nr
Match: gi|641831010|gb|KDO50081.1| (hypothetical protein CISIN_1g032230mg [Citrus sinensis])

HSP 1 Score: 188.3 bits (477), Expect = 9.0e-45
Identity = 87/142 (61.27%), Postives = 114/142 (80.28%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEK 60
           ++S + +TSF+ ++P   +L+ +PN+G+ LFGL+   +RGGRV AMATYKVKLITP GE+
Sbjct: 4   LSSAMVSTSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQ 63

Query: 61  VVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWV 120
            +ECPD+ YILDAAE+ GIDLP+SCRAG+CS C GK+ SG VDQSD SFL++DQI  G+V
Sbjct: 64  EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYV 123

Query: 121 LTCLATPLSDVVIETDKEEEFS 143
           LTC+A P SDV +ET K+EE S
Sbjct: 124 LTCVAYPTSDVTVETHKDEEMS 145

[Close]

BLAST of Lsi05G001640 vs. NCBI nr
Match: gi|338173755|gb|AEI83424.1| (chloroplast ferredoxin I [Camellia sinensis])

HSP 1 Score: 188.3 bits (477), Expect = 9.0e-45
Identity = 92/143 (64.34%), Postives = 112/143 (78.32%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEK 60
           ++S + +TSFL  Q P  +LR +PNVG+ LFG++  G RGGRVTAMA YKVKL+TP G +
Sbjct: 7   LSSTMVSTSFLQRQQPVTSLRSLPNVGQALFGVK--GGRGGRVTAMAMYKVKLLTPEGPQ 66

Query: 61  VVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWV 120
             ECPD+ YILD AE  GIDLP+SCRAG+CS+C GKL  GKVDQSD SFLD+DQ+  GWV
Sbjct: 67  EFECPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKLTGGKVDQSDGSFLDDDQMDGGWV 126

Query: 121 LTCLATPLSDVVIETDKEEEFSS 144
           LTC+A P SDVVIET KEEE ++
Sbjct: 127 LTCVAYPQSDVVIETHKEEELTA 147

[Close]

BLAST of Lsi05G001640 vs. NCBI nr
Match: gi|568833696|ref|XP_006471013.1| (PREDICTED: ferredoxin, leaf L-A-like [Citrus sinensis])

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-44
Identity = 87/142 (61.27%), Postives = 114/142 (80.28%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEK 60
           ++S + +TSF+ ++P   +L+ +PN+G+ LFGL+   +RGGRV AMATYKVKLITP GE+
Sbjct: 4   LSSAMVSTSFVRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQ 63

Query: 61  VVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWV 120
            +ECPD+ YILDAAE+ GIDLP+SCRAG+CS C GK+ SG VDQSD SFL++DQI  G+V
Sbjct: 64  EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYV 123

Query: 121 LTCLATPLSDVVIETDKEEEFS 143
           LTC+A P SDV +ET K+EE S
Sbjct: 124 LTCVAYPTSDVTVETHKDEEMS 145

[Close]

BLAST of Lsi05G001640 vs. NCBI nr
Match: gi|568833694|ref|XP_006471012.1| (PREDICTED: ferredoxin [Citrus sinensis])

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-43
Identity = 87/142 (61.27%), Postives = 114/142 (80.28%), Query Frame = 1


Query: 1   MASLITTTSFLWSQPPAATLRLVPNVGERLFGLQKGGSRGGRVTAMATYKVKLITPSGEK 60
           ++S + +TSF+ S+P A +L+ +PN+G+ +FGL+   +RGGRV AMATYKVKLITP GE+
Sbjct: 4   LSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLK--ANRGGRVVAMATYKVKLITPGGEE 63

Query: 61  VVECPDNEYILDAAENDGIDLPFSCRAGACSACVGKLKSGKVDQSDVSFLDEDQIAQGWV 120
            + CPD+ +ILDAAE  G+DLP+SCRAGACS+C GK+ SG VDQS+ SFLD+DQI +G+V
Sbjct: 64  EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFV 123

Query: 121 LTCLATPLSDVVIETDKEEEFS 143
           LTC A P SDV IET KEEE +
Sbjct: 124 LTCAAYPTSDVTIETHKEEELA 143

The following BLAST results are available for this feature:

BLAST of Lsi05G001640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FER2_ARATH	3.8e-43	61.70	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1	[more]
FER1_ARATH	3.2e-42	60.00	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1	[more]
FER1_SOLLC	2.7e-41	58.04	Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1	[more]
FER1_MESCR	2.7e-41	61.31	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1	[more]
FER_CAPAN	3.5e-41	57.14	Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1	[more]

BLAST of Lsi05G001640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067EGN2_CITSI	6.3e-45	61.27	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032230mg PE=4 SV=1	[more]
F8SPG7_CAMSI	6.3e-45	64.34	Chloroplast ferredoxin I OS=Camellia sinensis PE=2 SV=1	[more]
A0A067L2U1_JATCU	2.0e-43	62.86	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04972 PE=4 SV=1	[more]
A0A067E882_CITSI	2.0e-43	60.56	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032269mg PE=4 SV=1	[more]
V4T673_9ROSI	2.6e-43	60.56	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002793mg PE=4 SV=1	[more]

BLAST of Lsi05G001640 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G60950.1	2.1e-44	61.70	2Fe-2S ferredoxin-like superfamily protein	[more]
AT1G10960.1	1.8e-43	60.00	ferredoxin 1	[more]
AT2G27510.1	3.3e-29	56.64	ferredoxin 3	[more]
AT5G10000.1	1.0e-25	50.45	ferredoxin 4	[more]
AT1G32550.2	1.3e-09	35.16	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of Lsi05G001640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112425\|ref\|XP_008456215.1\|	4.6e-49	71.94	PREDICTED: ferredoxin-like [Cucumis melo]	[more]
gi\|641831010\|gb\|KDO50081.1\|	9.0e-45	61.27	hypothetical protein CISIN_1g032230mg [Citrus sinensis]	[more]
gi\|338173755\|gb\|AEI83424.1\|	9.0e-45	64.34	chloroplast ferredoxin I [Camellia sinensis]	[more]
gi\|568833696\|ref\|XP_006471013.1\|	1.2e-44	61.27	PREDICTED: ferredoxin, leaf L-A-like [Citrus sinensis]	[more]
gi\|568833694\|ref\|XP_006471012.1\|	1.3e-43	61.27	PREDICTED: ferredoxin [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

Vocabulary: **Molecular Function**
Term	Definition
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0051536	iron-sulfur cluster binding
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR012675	Beta-grasp_dom_sf
IPR010241	Fd_pln
IPR006058	2Fe2S_fd_BS
IPR001041	2Fe-2S_ferredoxin-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0009639	response to red or far red light
biological_process	GO:0009688	abscisic acid biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009536	plastid
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001640.1	Lsi05G001640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 56..127 score: 1.4
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 49..139 score: 12
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 29..138 score: 1.57
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 85..93 scor
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAMs	TIGR02008	TIGR02008	coord: 47..141 score: 2.3
IPR012675	Beta-grasp domain	GENE3D	G3DSA:3.10.20.30		coord: 45..141 score: 4.7
None	No IPR available	PANTHER	PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	coord: 24..142 score: 4.6
None	No IPR available	PANTHER	PTHR19370:SF120	FERREDOXIN-1, CHLOROPLASTIC-RELATED	coord: 24..142 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G001640	Csa3G222790	Cucumber (Chinese Long) v2	culsiB211
Lsi05G001640	CSPI03G19080	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G001640	Cucsa.032940	Cucumber (Gy14) v1	cgylsiB003
Lsi05G001640	CmaCh04G005340	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G001640	CmoCh16G004200	Cucurbita moschata (Rifu)	cmolsiB304
Lsi05G001640	CmoCh04G005700	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G001640	Cla013019	Watermelon (97103) v1	lsiwmB361
Lsi05G001640	MELO3C019438	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G001640	ClCG05G009510	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G001640	MELO3C019438.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G001640	Cla97C05G091890	Watermelon (97103) v2	lsiwmbB329
Lsi05G001640	Bhi01G001192	Wax gourd	lsiwgoB431
Lsi05G001640	Cp4.1LG01g01870	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G001640	CsGy3G018990	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G001640	Carg13204	Silver-seed gourd	carlsiB039
Lsi05G001640	Carg11316	Silver-seed gourd	carlsiB595
Lsi05G001640	CsaV3_3G019210	Cucumber (Chinese Long) v3	cuclsiB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G001640	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G001640	Cucurbita pepo (Zucchini)	cpelsiB177