Carg13204 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13204
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ferredoxin
Location	Cucurbita_argyrosperma_scaffold_101 : 919848 .. 920306 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGCACCACCGCACTCACCGCCCCAATTCCGGTCACCTCCTTCCTCCGGCGGCAGCAGCCGGTGACCGGGGTAAGCCTGAGGCCATTTCCCAACGTGGGTCAGTCTCTGTTTGGGCTGAAACTCGGCAGCAGCCGCGGTGGAAGCATGACAGTGATGGCATACAAGGTGAAGCTGATTACACCAGAGGGAGAGAAAGAGATTGAATGCAGCGGCGATGATTACATTCTTGATGCGGCGGAGGAAAGCGGCGTTGATCTGCCGTACTCTTGCAGAGCAGGGGCGTGTTCTTCGTGCATTGGGAAGCTGAAATCAGGGAAGGTGGATCAATCTGATAACAGCTTTCTTGATGATCAACAAATGGAAGATGGGTGGGTTCTGACTTGTGTTGCAAGGCCTGAATCTGATATTGTAATTGAGACCCACAAGGAGGAGGTCTTTGCTGATTCTGCCTAA

mRNA sequence

ATGGGCAGCACCACCGCACTCACCGCCCCAATTCCGGTCACCTCCTTCCTCCGGCGGCAGCAGCCGGTGACCGGGGTAAGCCTGAGGCCATTTCCCAACGTGGGTCAGTCTCTGTTTGGGCTGAAACTCGGCAGCAGCCGCGGTGGAAGCATGACAGTGATGGCATACAAGGTGAAGCTGATTACACCAGAGGGAGAGAAAGAGATTGAATGCAGCGGCGATGATTACATTCTTGATGCGGCGGAGGAAAGCGGCGTTGATCTGCCGTACTCTTGCAGAGCAGGGGCGTGTTCTTCGTGCATTGGGAAGCTGAAATCAGGGAAGGTGGATCAATCTGATAACAGCTTTCTTGATGATCAACAAATGGAAGATGGGTGGGTTCTGACTTGTGTTGCAAGGCCTGAATCTGATATTGTAATTGAGACCCACAAGGAGGAGGTCTTTGCTGATTCTGCCTAA

Coding sequence (CDS)

ATGGGCAGCACCACCGCACTCACCGCCCCAATTCCGGTCACCTCCTTCCTCCGGCGGCAGCAGCCGGTGACCGGGGTAAGCCTGAGGCCATTTCCCAACGTGGGTCAGTCTCTGTTTGGGCTGAAACTCGGCAGCAGCCGCGGTGGAAGCATGACAGTGATGGCATACAAGGTGAAGCTGATTACACCAGAGGGAGAGAAAGAGATTGAATGCAGCGGCGATGATTACATTCTTGATGCGGCGGAGGAAAGCGGCGTTGATCTGCCGTACTCTTGCAGAGCAGGGGCGTGTTCTTCGTGCATTGGGAAGCTGAAATCAGGGAAGGTGGATCAATCTGATAACAGCTTTCTTGATGATCAACAAATGGAAGATGGGTGGGTTCTGACTTGTGTTGCAAGGCCTGAATCTGATATTGTAATTGAGACCCACAAGGAGGAGGTCTTTGCTGATTCTGCCTAA

Protein sequence

MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQMEDGWVLTCVARPESDIVIETHKEEVFADSA

Homology

[Close]

BLAST of Carg13204 vs. NCBI nr
Match: XP_022941964.1 (ferredoxin-like [Cucurbita moschata] >XP_022983176.1 ferredoxin-like [Cucurbita maxima] >XP_023547581.1 ferredoxin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 306.2 bits (783), Expect = 6.1e-80
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL
Sbjct: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ
Sbjct: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFADSA 153
           QMEDGWVLTCVARPESDIVIETHKEEVFADSA
Sbjct: 121 QMEDGWVLTCVARPESDIVIETHKEEVFADSA 152

[Close]

BLAST of Carg13204 vs. NCBI nr
Match: XP_008456052.1 (PREDICTED: ferredoxin-like [Cucumis melo])

HSP 1 Score: 226.5 bits (576), Expect = 6.2e-56
Identity = 112/149 (75.17%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           MGSTTA T+P P TSFLRR  P  GVSL+PFPN+G+SLFGLK    RGG +T MAY VKL
Sbjct: 1   MGSTTAFTSPFPATSFLRR-NPTGGVSLKPFPNMGESLFGLK---HRGGRVTAMAYNVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITPEGEK I C  D YILDAAEE+G+DLPYSCRAGACSSCIGK+ SGK+DQSD SFLDD 
Sbjct: 61  ITPEGEKSITCPDDAYILDAAEENGIDLPYSCRAGACSSCIGKVVSGKLDQSDQSFLDDD 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           Q+ +GWVLTCVAR ESD+VIETHKE+VFA
Sbjct: 121 QVAEGWVLTCVARAESDVVIETHKEDVFA 145

[Close]

BLAST of Carg13204 vs. NCBI nr
Match: XP_004146259.1 (PREDICTED: ferredoxin, leaf L-A-like [Cucumis sativus] >KGN57598.1 hypothetical protein Csa_3G222800 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 2.0e-54
Identity = 106/149 (71.14%), Postives = 126/149 (84.56%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           M STTA+T+P P TSF+RR  P  GVS +PFPN+G+SL+GLK    RGG + + AYKVKL
Sbjct: 1   MSSTTAITSPFPATSFIRR-NPTGGVSFKPFPNMGESLYGLK---HRGGRLAMKAYKVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITP+GEK +EC  D YILDAAEESG+DLPYSCRAGACSSC+GK+ SGK+DQSD SFLDD+
Sbjct: 61  ITPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDE 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           Q+ +GWVLTCVARPESD+VIETHKE+ FA
Sbjct: 121 QVAEGWVLTCVARPESDLVIETHKEDSFA 145

[Close]

BLAST of Carg13204 vs. NCBI nr
Match: XP_022136604.1 (ferredoxin-like [Momordica charantia])

HSP 1 Score: 218.0 bits (554), Expect = 2.2e-53
Identity = 109/149 (73.15%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           MGSTTAL+ PIP TSFL R QP  G  LRPFPN+GQ +FGLK G SRGG +  MAYKV L
Sbjct: 1   MGSTTALSGPIPATSFL-RGQPAAG--LRPFPNMGQGVFGLK-GGSRGGRVRAMAYKVTL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITP GEK ++C  D YILDAAEE G+DLPYSCRAGACSSC+GK+ SGKVDQSDNSFLDD 
Sbjct: 61  ITPSGEKSVKCPPDSYILDAAEEDGLDLPYSCRAGACSSCVGKVVSGKVDQSDNSFLDDD 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           QM +GWVLTCVA P+SD+VIETHKE  F+
Sbjct: 121 QMAEGWVLTCVAYPQSDVVIETHKEGEFS 145

[Close]

BLAST of Carg13204 vs. NCBI nr
Match: XP_012071291.1 (ferredoxin-A [Jatropha curcas] >KDP38815.1 hypothetical protein JCGZ_04972 [Jatropha curcas])

HSP 1 Score: 198.0 bits (502), Expect = 2.4e-47
Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLI 62
           ++TAL++ +  TSF RR QPVT  SLR  PNVGQ+LFGLK  SSRGG    MA YKVKL+
Sbjct: 2   ASTALSSAMVSTSFTRR-QPVT--SLRALPNVGQALFGLK--SSRGGKFKAMASYKVKLL 61

Query: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122
           TPEGEK IEC  D YILDAAEE+GVDLPYSCRAG+CSSC GK+  G+VDQSD SFLDD+Q
Sbjct: 62  TPEGEKVIECPDDVYILDAAEEAGVDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQ 121

Query: 123 MEDGWVLTCVARPESDIVIETHKEE 147
           ME+GWVLTCVA P SD+VIETHKEE
Sbjct: 122 MEEGWVLTCVAYPTSDVVIETHKEE 141

[Close]

BLAST of Carg13204 vs. TAIR10
Match: AT1G10960.1 (ferredoxin 1)

HSP 1 Score: 192.2 bits (487), Expect = 2.3e-49
Identity = 100/147 (68.03%), Postives = 120/147 (81.63%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLR--PFPNVGQSLFGLKLGSSRGGSMTVMA-YKVK 62
           ++TAL++ I  TSFLRRQQ  T +SLR  PF N  QSLFGLK  ++RGG +T MA YKVK
Sbjct: 2   ASTALSSAIVSTSFLRRQQ--TPISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVK 61

Query: 63  LITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDD 122
            ITPEGE+E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG +DQSD SFLDD
Sbjct: 62  FITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD 121

Query: 123 QQMEDGWVLTCVARPESDIVIETHKEE 147
           +QM +G+VLTCVA P SD+VIETHKEE
Sbjct: 122 EQMSEGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of Carg13204 vs. TAIR10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 182.2 bits (461), Expect = 2.4e-46
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVG-QSLFGLKLGSSRGGSMTVMA-YKVKL 62
           ++TAL++ I  TSF+RR      +SLR  P+   QSLFGLK G++RGG +T MA YKVK 
Sbjct: 2   ASTALSSAIVGTSFIRRSP--APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 122
           ITPEGE E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG VDQSD SFLDD+
Sbjct: 62  ITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDE 121

Query: 123 QMEDGWVLTCVARPESDIVIETHKEE 147
           Q+ +G+VLTC A P SD+ IETHKEE
Sbjct: 122 QIGEGFVLTCAAYPTSDVTIETHKEE 145

[Close]

BLAST of Carg13204 vs. TAIR10
Match: AT2G27510.1 (ferredoxin 3)

HSP 1 Score: 142.5 bits (358), Expect = 2.1e-34
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 39  FGLKLGSSRGGSMTVMAYKVKLITPEG-EKEIECSGDDYILDAAEESGVDLPYSCRAGAC 98
           FGLK  ++ GG+     YKVKL+ P+G E E E   D YILDAAEE+GVDLPYSCRAGAC
Sbjct: 44  FGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGAC 103

Query: 99  SSCIGKLKSGKVDQSDNSFLDDQQMEDGWVLTCVARPESDIVIETHKE 146
           S+C G++ SG VDQSD SFL+D  +E G+VLTCVA P+SD VI THKE
Sbjct: 104 STCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKE 151

[Close]

BLAST of Carg13204 vs. TAIR10
Match: AT5G10000.1 (ferredoxin 4)

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-26
Identity = 59/107 (55.14%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 43  LGSSRGGSMTVMA---YKVKLITPEG-EKEIECSGDDYILDAAEESGVDLPYSCRAGACS 102
           L SSRG    V A    KVKLI+PEG E+EIE + D  IL++AE +G++LPYSCR+G C 
Sbjct: 38  LSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCG 97

Query: 103 SCIGKLKSGKVDQSDNSFLDDQQMEDGWVLTCVARPESDIVIETHKE 146
           +C GKL SGKVDQS  SFL+++Q++ G++LTC+A P  D V+ THK+
Sbjct: 98  TCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQ 144

[Close]

BLAST of Carg13204 vs. TAIR10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 6.0e-13
Identity = 49/141 (34.75%), Postives = 66/141 (46.81%), Query Frame = 0


Query: 8   TAPIPV-TSFLRRQQPVTGVSLR-PFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLITPEG 67
           T P+P  TS +   +P    S   P  N   S    +      G +   AYKV +     
Sbjct: 3   TLPLPTQTSTISLPKPYLSNSFSFPLRNATLSTTTNRRNFLTTGRIIARAYKVVVEHDGK 62

Query: 68  EKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQMEDG 127
             E+E   D+ IL  A +SG+D+PY C  G C +C  KL +G VDQS    L D  +E G
Sbjct: 63  TTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-GGMLSDDVVERG 122

Query: 128 WVLTCVARPESDIVIETHKEE 147
           + L C + P SD  I+   EE
Sbjct: 123 YTLLCASYPTSDCHIKMIPEE 142

[Close]

BLAST of Carg13204 vs. Swiss-Prot
Match: sp|O04090|FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.2e-48
Identity = 100/147 (68.03%), Postives = 120/147 (81.63%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLR--PFPNVGQSLFGLKLGSSRGGSMTVMA-YKVK 62
           ++TAL++ I  TSFLRRQQ  T +SLR  PF N  QSLFGLK  ++RGG +T MA YKVK
Sbjct: 2   ASTALSSAIVSTSFLRRQQ--TPISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVK 61

Query: 63  LITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDD 122
            ITPEGE+E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG +DQSD SFLDD
Sbjct: 62  FITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD 121

Query: 123 QQMEDGWVLTCVARPESDIVIETHKEE 147
           +QM +G+VLTCVA P SD+VIETHKEE
Sbjct: 122 EQMSEGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of Carg13204 vs. Swiss-Prot
Match: sp|P16972|FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.4e-45
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVG-QSLFGLKLGSSRGGSMTVMA-YKVKL 62
           ++TAL++ I  TSF+RR      +SLR  P+   QSLFGLK G++RGG +T MA YKVK 
Sbjct: 2   ASTALSSAIVGTSFIRRSP--APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 122
           ITPEGE E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG VDQSD SFLDD+
Sbjct: 62  ITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDE 121

Query: 123 QMEDGWVLTCVARPESDIVIETHKEE 147
           Q+ +G+VLTC A P SD+ IETHKEE
Sbjct: 122 QIGEGFVLTCAAYPTSDVTIETHKEE 145

[Close]

BLAST of Carg13204 vs. Swiss-Prot
Match: sp|Q9ZTS2|FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.6e-42
Identity = 87/141 (61.70%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 6   ALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLITPE 65
           +++A +  TSF+ R+  VT  SL+P PNVG++LFGLK  S+ GG +T MA YKVKLITP+
Sbjct: 3   SVSATMISTSFMPRKPAVT--SLKPIPNVGEALFGLK--SANGGKVTCMASYKVKLITPD 62

Query: 66  GEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQMED 125
           G  E +C  + YILD AEE+G DLPYSCRAG+CSSC GK+  G VDQ+D +FLDD Q+E+
Sbjct: 63  GPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEE 122

Query: 126 GWVLTCVARPESDIVIETHKE 146
           GWVLTCVA P+SD+ IETHKE
Sbjct: 123 GWVLTCVAYPQSDVTIETHKE 139

[Close]

BLAST of Carg13204 vs. Swiss-Prot
Match: sp|O04683|FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-41
Identity = 83/144 (57.64%), Postives = 105/144 (72.92%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLIT 62
           +T AL+     T+F  +  P+T        NVG++LFGLK  +SRG    + AYKV L+T
Sbjct: 4   TTAALSGATMSTAFAPKTPPMTAALP---TNVGRALFGLKSSASRGRVTAMAAYKVTLVT 63

Query: 63  PEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQM 122
           PEG++E+EC  D YILDAAEE+G+DLPYSCRAG+CSSC GK+ SG V+Q D SFLDD Q+
Sbjct: 64  PEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQI 123

Query: 123 EDGWVLTCVARPESDIVIETHKEE 147
           ++GWVLTCVA P  D+ IETHKEE
Sbjct: 124 KEGWVLTCVAYPTGDVTIETHKEE 144

[Close]

BLAST of Carg13204 vs. Swiss-Prot
Match: sp|P00221|FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETF PE=1 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-40
Identity = 84/144 (58.33%), Postives = 103/144 (71.53%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLIT 62
           + T  T     T+F+ + Q    ++  P  N G+SLFGLK G SRGG MT+ AYKV L+T
Sbjct: 2   AATTTTMMGMATTFVPKPQAPPMMAALP-SNTGRSLFGLKTG-SRGGRMTMAAYKVTLVT 61

Query: 63  PEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQM 122
           P G  E +C  D YILDAAEE G+DLPYSCRAG+CSSC GKLK+G ++Q D SFLDD Q+
Sbjct: 62  PTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQI 121

Query: 123 EDGWVLTCVARPESDIVIETHKEE 147
           ++GWVLTC A P SD+ IETHKEE
Sbjct: 122 DEGWVLTCAAYPVSDVTIETHKEE 143

[Close]

BLAST of Carg13204 vs. TrEMBL
Match: tr|A0A1S3C1X0|A0A1S3C1X0_CUCME (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496100 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 4.1e-56
Identity = 112/149 (75.17%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           MGSTTA T+P P TSFLRR  P  GVSL+PFPN+G+SLFGLK    RGG +T MAY VKL
Sbjct: 1   MGSTTAFTSPFPATSFLRR-NPTGGVSLKPFPNMGESLFGLK---HRGGRVTAMAYNVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITPEGEK I C  D YILDAAEE+G+DLPYSCRAGACSSCIGK+ SGK+DQSD SFLDD 
Sbjct: 61  ITPEGEKSITCPDDAYILDAAEENGIDLPYSCRAGACSSCIGKVVSGKLDQSDQSFLDDD 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           Q+ +GWVLTCVAR ESD+VIETHKE+VFA
Sbjct: 121 QVAEGWVLTCVARAESDVVIETHKEDVFA 145

[Close]

BLAST of Carg13204 vs. TrEMBL
Match: tr|A0A0A0L764|A0A0A0L764_CUCSA (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G222800 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-54
Identity = 106/149 (71.14%), Postives = 126/149 (84.56%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           M STTA+T+P P TSF+RR  P  GVS +PFPN+G+SL+GLK    RGG + + AYKVKL
Sbjct: 1   MSSTTAITSPFPATSFIRR-NPTGGVSFKPFPNMGESLYGLK---HRGGRLAMKAYKVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITP+GEK +EC  D YILDAAEESG+DLPYSCRAGACSSC+GK+ SGK+DQSD SFLDD+
Sbjct: 61  ITPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDE 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           Q+ +GWVLTCVARPESD+VIETHKE+ FA
Sbjct: 121 QVAEGWVLTCVARPESDLVIETHKEDSFA 145

[Close]

BLAST of Carg13204 vs. TrEMBL
Match: tr|A0A067L2U1|A0A067L2U1_JATCU (Ferredoxin OS=Jatropha curcas OX=180498 GN=JCGZ_04972 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.6e-47
Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLI 62
           ++TAL++ +  TSF RR QPVT  SLR  PNVGQ+LFGLK  SSRGG    MA YKVKL+
Sbjct: 2   ASTALSSAMVSTSFTRR-QPVT--SLRALPNVGQALFGLK--SSRGGKFKAMASYKVKLL 61

Query: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122
           TPEGEK IEC  D YILDAAEE+GVDLPYSCRAG+CSSC GK+  G+VDQSD SFLDD+Q
Sbjct: 62  TPEGEKVIECPDDVYILDAAEEAGVDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQ 121

Query: 123 MEDGWVLTCVARPESDIVIETHKEE 147
           ME+GWVLTCVA P SD+VIETHKEE
Sbjct: 122 MEEGWVLTCVAYPTSDVVIETHKEE 141

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BLAST of Carg13204 vs. TrEMBL
Match: tr|F8SPG7|F8SPG7_CAMSI (Ferredoxin OS=Camellia sinensis OX=4442 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.5e-47
Identity = 101/147 (68.71%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVK 60
           M    +L++ +  TSFL+RQQPVT  SLR  PNVGQ+LFG+K G  RGG +T MA YKVK
Sbjct: 1   MAMAASLSSTMVSTSFLQRQQPVT--SLRSLPNVGQALFGVKGG--RGGRVTAMAMYKVK 60

Query: 61  LITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDD 120
           L+TPEG +E EC  D YILD AEE G+DLPYSCRAG+CSSC GKL  GKVDQSD SFLDD
Sbjct: 61  LLTPEGPQEFECPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKLTGGKVDQSDGSFLDD 120

Query: 121 QQMEDGWVLTCVARPESDIVIETHKEE 147
            QM+ GWVLTCVA P+SD+VIETHKEE
Sbjct: 121 DQMDGGWVLTCVAYPQSDVVIETHKEE 143

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BLAST of Carg13204 vs. TrEMBL
Match: tr|A0A2P5BC06|A0A2P5BC06_PARAD (Ferredoxin OS=Parasponia andersonii OX=3476 GN=PanWU01x14_252590 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 5.9e-47
Identity = 98/148 (66.22%), Postives = 116/148 (78.38%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVM-AYKVKLI 62
           +  AL++ +  TSF+RRQ   T  SLR  PNVGQ+LFGLK   +RGG +T M AYKVKLI
Sbjct: 4   TAAALSSTMVSTSFVRRQPTTT--SLRALPNVGQALFGLKATPNRGGRVTAMAAYKVKLI 63

Query: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122
           TPEGE E EC  D Y+LD AEE+G+DLPYSCRAG+CSSC+GK+  G+VDQSDNSFLDD Q
Sbjct: 64  TPEGEVEFECPDDVYVLDQAEENGIDLPYSCRAGSCSSCVGKVVKGEVDQSDNSFLDDDQ 123

Query: 123 MEDGWVLTCVARPESDIVIETHKEEVFA 150
           +  GWVLTCVA P+SD+VIETHKEE  A
Sbjct: 124 LAGGWVLTCVAYPQSDVVIETHKEEELA 149

The following BLAST results are available for this feature:

BLAST of Carg13204 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941964.1	6.1e-80	100.00	ferredoxin-like [Cucurbita moschata] >XP_022983176.1 ferredoxin-like [Cucurbita ...	[more]
XP_008456052.1	6.2e-56	75.17	PREDICTED: ferredoxin-like [Cucumis melo]	[more]
XP_004146259.1	2.0e-54	71.14	PREDICTED: ferredoxin, leaf L-A-like [Cucumis sativus] >KGN57598.1 hypothetical ...	[more]
XP_022136604.1	2.2e-53	73.15	ferredoxin-like [Momordica charantia]	[more]
XP_012071291.1	2.4e-47	72.41	ferredoxin-A [Jatropha curcas] >KDP38815.1 hypothetical protein JCGZ_04972 [Jatr...	[more]

BLAST of Carg13204 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10960.1	2.3e-49	68.03	ferredoxin 1	[more]
AT1G60950.1	2.4e-46	63.70	2Fe-2S ferredoxin-like superfamily protein	[more]
AT2G27510.1	2.1e-34	63.89	ferredoxin 3	[more]
AT5G10000.1	8.1e-26	55.14	ferredoxin 4	[more]
AT4G14890.1	6.0e-13	34.75	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of Carg13204 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04090\|FER1_ARATH	4.2e-48	68.03	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1	[more]
sp\|P16972\|FER2_ARATH	4.4e-45	63.70	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1	[more]
sp\|Q9ZTS2\|FER_CAPAN	1.6e-42	61.70	Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1	[more]
sp\|O04683\|FER1_MESCR	1.7e-41	57.64	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
sp\|P00221\|FER1_SPIOL	1.1e-40	58.33	Ferredoxin-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETF PE=1 SV=2	[more]

BLAST of Carg13204 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1X0\|A0A1S3C1X0_CUCME	4.1e-56	75.17	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496100 PE=3 SV=1	[more]
tr\|A0A0A0L764\|A0A0A0L764_CUCSA	1.3e-54	71.14	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G222800 PE=3 SV=1	[more]
tr\|A0A067L2U1\|A0A067L2U1_JATCU	1.6e-47	72.41	Ferredoxin OS=Jatropha curcas OX=180498 GN=JCGZ_04972 PE=3 SV=1	[more]
tr\|F8SPG7\|F8SPG7_CAMSI	4.5e-47	68.71	Ferredoxin OS=Camellia sinensis OX=4442 PE=2 SV=1	[more]
tr\|A0A2P5BC06\|A0A2P5BC06_PARAD	5.9e-47	66.22	Ferredoxin OS=Parasponia andersonii OX=3476 GN=PanWU01x14_252590 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

Vocabulary: **Molecular Function**
Term	Definition
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0051536	iron-sulfur cluster binding
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036010	2Fe-2S_ferredoxin-like_sf
IPR006058	2Fe2S_fd_BS
IPR010241	Fd_pln
IPR012675	Beta-grasp_dom_sf
IPR001041	2Fe-2S_ferredoxin-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13204-RA	Carg13204-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 62..134 e-value: 2.7E-19 score: 68.8
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 56..146 score: 13.204
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 58..141 e-value: 5.67464E-32 score: 110.177
IPR012675	Beta-grasp domain superfamily	GENE3D	G3DSA:3.10.20.30		coord: 53..151 e-value: 6.7E-34 score: 117.7
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 55..146 e-value: 4.7E-47 score: 155.7
None	No IPR available	PANTHER	PTHR43112:SF4	FERREDOXIN-3, CHLOROPLASTIC-RELATED	coord: 26..146
None	No IPR available	PANTHER	PTHR43112	FAMILY NOT NAMED	coord: 26..146
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 92..100
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	SSF54292	2Fe-2S ferredoxin-like	coord: 53..148

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13204	Cla013019	Watermelon (97103) v1	carwmB0048
Carg13204	Csa3G222790	Cucumber (Chinese Long) v2	carcuB0043
Carg13204	MELO3C019438	Melon (DHL92) v3.5.1	carmeB0041
Carg13204	ClCG05G009510	Watermelon (Charleston Gray)	carwcgB0045
Carg13204	CSPI03G19080	Wild cucumber (PI 183967)	carcpiB0047
Carg13204	Cucsa.032940	Cucumber (Gy14) v1	carcgyB0048
Carg13204	CmaCh04G005340	Cucurbita maxima (Rimu)	carcmaB0055
Carg13204	CmoCh04G005700	Cucurbita moschata (Rifu)	carcmoB0058
Carg13204	CmoCh16G004200	Cucurbita moschata (Rifu)	carcmoB0055
Carg13204	Lsi05G001640	Bottle gourd (USVL1VR-Ls)	carlsiB039
Carg13204	Cp4.1LG01g01870	Cucurbita pepo (Zucchini)	carcpeB0061
Carg13204	CsGy3G018990	Cucumber (Gy14) v2	carcgybB0043
Carg13204	MELO3C019438.2	Melon (DHL92) v3.6.1	carmedB0042
Carg13204	CsaV3_3G019210	Cucumber (Chinese Long) v3	carcucB0048
Carg13204	Cla97C05G091890	Watermelon (97103) v2	carwmbB0042
Carg13204	Bhi01G001192	Wax gourd	carwgoB0050

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg13204	Carg11316	Silver-seed gourd	carcarB051

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13204	Cucurbita maxima (Rimu)	carcmaB0053
Carg13204	Cucurbita pepo (Zucchini)	carcpeB0059