CmoCh16G004200 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G004200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	2Fe-2S ferredoxin, iron-sulphur binding site
Location	Cmo_Chr16 : 1963144 .. 1963587 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGTGCACCAGTACTTTCCGGCGCTACAATCAACACCATCCTCCTCCAGAAGCAGCCAGCAACTAGCCTACGATCGGTGTCGAACTTCGGCCAGGGTCTTTTCGGGCTGAAGGACAGCACCCTTGGTGGGCGATTGGTTGCCAAGGCAGTGTACAGTGTGAAGCTACTCACCCCAGAAGGAGAGAAGGAGTTCATGTGCCCGGACGACGTATACATCCTCGATCAGGCCGAGGAAATAGGAATCGACCTTCCATATTCATGCCGTGCAGGGTCTTGCTCTTCTTGCGCAGGGAAAGTAGTGGGAGGGCAGGTGGAACAGTCGGACGGCAGCTACCTTGACGACGACCAGATTGAAGATGGTTGGGTTCTAACTTGTGTTGCATACCCTCAATCTAATGTTGTCATTCAGACCCACAAGGAGGAAGAGCTTGTTAGTTAG

mRNA sequence

ATGGCCAGTGCACCAGTACTTTCCGGCGCTACAATCAACACCATCCTCCTCCAGAAGCAGCCAGCAACTAGCCTACGATCGGTGTCGAACTTCGGCCAGGGTCTTTTCGGGCTGAAGGACAGCACCCTTGGTGGGCGATTGGTTGCCAAGGCAGTGTACAGTGTGAAGCTACTCACCCCAGAAGGAGAGAAGGAGTTCATGTGCCCGGACGACGTATACATCCTCGATCAGGCCGAGGAAATAGGAATCGACCTTCCATATTCATGCCGTGCAGGGTCTTGCTCTTCTTGCGCAGGGAAAGTAGTGGGAGGGCAGGTGGAACAGTCGGACGGCAGCTACCTTGACGACGACCAGATTGAAGATGGTTGGGTTCTAACTTGTGTTGCATACCCTCAATCTAATGTTGTCATTCAGACCCACAAGGAGGAAGAGCTTGTTAGTTAG

Coding sequence (CDS)

ATGGCCAGTGCACCAGTACTTTCCGGCGCTACAATCAACACCATCCTCCTCCAGAAGCAGCCAGCAACTAGCCTACGATCGGTGTCGAACTTCGGCCAGGGTCTTTTCGGGCTGAAGGACAGCACCCTTGGTGGGCGATTGGTTGCCAAGGCAGTGTACAGTGTGAAGCTACTCACCCCAGAAGGAGAGAAGGAGTTCATGTGCCCGGACGACGTATACATCCTCGATCAGGCCGAGGAAATAGGAATCGACCTTCCATATTCATGCCGTGCAGGGTCTTGCTCTTCTTGCGCAGGGAAAGTAGTGGGAGGGCAGGTGGAACAGTCGGACGGCAGCTACCTTGACGACGACCAGATTGAAGATGGTTGGGTTCTAACTTGTGTTGCATACCCTCAATCTAATGTTGTCATTCAGACCCACAAGGAGGAAGAGCTTGTTAGTTAG

Homology

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BLAST of CmoCh16G004200 vs. Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.1e-48
Identity = 92/146 (63.01%), Postives = 108/146 (73.97%), Query Frame = 1


Query: 2   ASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKDSTLGGRLVAKAVYSVKLLTPE 61
           A+   LSGAT++T    K P  +    +N G+ LFGLK S   GR+ A A Y V L+TPE
Sbjct: 3   ATTAALSGATMSTAFAPKTPPMTAALPTNVGRALFGLKSSASRGRVTAMAAYKVTLVTPE 62

Query: 62  GEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQIED 121
           G++E  CPDDVYILD AEE GIDLPYSCRAGSCSSCAGKV  G V Q DGS+LDDDQI++
Sbjct: 63  GKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKE 122

Query: 122 GWVLTCVAYPQSNVVIQTHKEEELVS 148
           GWVLTCVAYP  +V I+THKEEEL +
Sbjct: 123 GWVLTCVAYPTGDVTIETHKEEELTA 148

[Close]

BLAST of CmoCh16G004200 vs. Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-47
Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = 1


Query: 7   LSGATINTILLQKQPA-TSLRSVSNFGQGLFGLKDSTLGGRLVAKAVYSVKLLTPEGEKE 66
           +S   I+T  + ++PA TSL+ + N G+ LFGLK +  GG++   A Y VKL+TP+G  E
Sbjct: 4   VSATMISTSFMPRKPAVTSLKPIPNVGEALFGLKSAN-GGKVTCMASYKVKLITPDGPIE 63

Query: 67  FMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQIEDGWVL 126
           F CPD+VYILDQAEE G DLPYSCRAGSCSSCAGK+ GG V+Q+DG++LDDDQ+E+GWVL
Sbjct: 64  FDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVL 123

Query: 127 TCVAYPQSNVVIQTHKEEELV 147
           TCVAYPQS+V I+THKE ELV
Sbjct: 124 TCVAYPQSDVTIETHKEAELV 143

[Close]

BLAST of CmoCh16G004200 vs. Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 188.7 bits (478), Expect = 4.4e-47
Identity = 95/149 (63.76%), Postives = 114/149 (76.51%), Query Frame = 1


Query: 1   MASAPVLSGATINTILLQKQPAT-SLRSVSNFGQGLFGLKDSTLGGRL-VAKAVYSVKLL 60
           MA+ P L G  ++T  L+ QP   S+ +   F  G  GLK S   G L VA A Y VKL+
Sbjct: 1   MATTPALYGTAVSTSFLRTQPMPMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLV 60

Query: 61  TPEGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQ 120
           TP+G +EF CP DVYILD AEE+GIDLPYSCRAGSCSSCAGKVVGG+V+QSDGS+LDD+Q
Sbjct: 61  TPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQ 120

Query: 121 IEDGWVLTCVAYPQSNVVIQTHKEEELVS 148
           IE G+VLTCVAYP S+VVI+THKEE+L +
Sbjct: 121 IEAGFVLTCVAYPTSDVVIETHKEEDLTA 149

[Close]

BLAST of CmoCh16G004200 vs. Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-45
Identity = 92/142 (64.79%), Postives = 111/142 (78.17%), Query Frame = 1


Query: 7   LSGATINTILLQKQPA-TSLRSVSNFGQGLFGLKDSTLGGRLVAKAVYSVKLLTPEGEKE 66
           +SG  I+T  L ++PA TSL+++SN G+ LFGLK S   GR+   A Y VKL+TPEG  E
Sbjct: 4   ISGTMISTSFLPRKPAVTSLKAISNVGEALFGLK-SGRNGRITCMASYKVKLITPEGPIE 63

Query: 67  FMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQIEDGWVL 126
           F CPDDVYILDQAEE G DLPYSCRAGSCSSCAGKV  G V+QSDG++LD+DQ   G+VL
Sbjct: 64  FECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVL 123

Query: 127 TCVAYPQSNVVIQTHKEEELVS 148
           TCVAYP+ +V I+THKEEEL +
Sbjct: 124 TCVAYPKGDVTIETHKEEELTA 144

[Close]

BLAST of CmoCh16G004200 vs. Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.0e-43
Identity = 90/147 (61.22%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 3   SAPVLSGATINTILLQKQPAT-SLRSVSNFG-QGLFGLKDSTL-GGRLVAKAVYSVKLLT 62
           ++  LS A + T  +++ PA  SLRS+ +   Q LFGLK  T  GGR+ A A Y VK +T
Sbjct: 2   ASTALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFIT 61

Query: 63  PEGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQI 122
           PEGE E  C DDVY+LD AEE GIDLPYSCRAGSCSSCAGKVV G V+QSD S+LDD+QI
Sbjct: 62  PEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 121

Query: 123 EDGWVLTCVAYPQSNVVIQTHKEEELV 147
            +G+VLTC AYP S+V I+THKEE++V
Sbjct: 122 GEGFVLTCAAYPTSDVTIETHKEEDIV 148

[Close]

BLAST of CmoCh16G004200 vs. TrEMBL
Match: A0A0A0LAD3_CUCSA (Ferredoxin-2 OS=Cucumis sativus GN=Csa_3G222790 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.9e-53
Identity = 104/148 (70.27%), Postives = 123/148 (83.11%), Query Frame = 1


Query: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKD-STLGGRLVAKAVYSVKLLT 60
           M S+P LS  T+NT  LQKQP T +R V NFGQ LF LK  S+ GGR++A A Y+VKL+T
Sbjct: 1   MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PEGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQI 120
           P GE EF CPDD YILD+AE++G DLPYSCRAGSCSSCAGKVV G+V+QSDGSYL+DDQ+
Sbjct: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120

Query: 121 EDGWVLTCVAYPQSNVVIQTHKEEELVS 148
           ++GWVLTCVAYPQS+VVI+THKEE L S
Sbjct: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 148

[Close]

BLAST of CmoCh16G004200 vs. TrEMBL
Match: F8SPG7_CAMSI (Chloroplast ferredoxin I OS=Camellia sinensis PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.4e-53
Identity = 106/148 (71.62%), Postives = 123/148 (83.11%), Query Frame = 1


Query: 1   MASAPVLSGATINTILLQKQ-PATSLRSVSNFGQGLFGLKDSTLGGRLVAKAVYSVKLLT 60
           MA A  LS   ++T  LQ+Q P TSLRS+ N GQ LFG+K    GGR+ A A+Y VKLLT
Sbjct: 1   MAMAASLSSTMVSTSFLQRQQPVTSLRSLPNVGQALFGVKGGR-GGRVTAMAMYKVKLLT 60

Query: 61  PEGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQI 120
           PEG +EF CPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGK+ GG+V+QSDGS+LDDDQ+
Sbjct: 61  PEGPQEFECPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKLTGGKVDQSDGSFLDDDQM 120

Query: 121 EDGWVLTCVAYPQSNVVIQTHKEEELVS 148
           + GWVLTCVAYPQS+VVI+THKEEEL +
Sbjct: 121 DGGWVLTCVAYPQSDVVIETHKEEELTA 147

[Close]

BLAST of CmoCh16G004200 vs. TrEMBL
Match: F6HK77_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00270 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.1e-51
Identity = 99/141 (70.21%), Postives = 120/141 (85.11%), Query Frame = 1


Query: 7   LSGATINTILLQKQPATSLRSVSNFGQGLFGLKDSTLGGRLVAKAVYSVKLLTPEGEKEF 66
           LSGA ++T  +++QP TSLR++ N GQ LFGLK     GR+ A AVY VKL+TPEG KEF
Sbjct: 4   LSGAMVSTSFIRRQPVTSLRALPNVGQALFGLKAGR--GRVTAMAVYKVKLITPEGAKEF 63

Query: 67  MCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQIEDGWVLT 126
            CPDDVY+LD AEEIGIDLPYSCRAGSCSSCAG+VV G V+QSDGS+L+D+Q+E+GWVLT
Sbjct: 64  ECPDDVYVLDHAEEIGIDLPYSCRAGSCSSCAGRVVEGTVDQSDGSFLEDEQMEEGWVLT 123

Query: 127 CVAYPQSNVVIQTHKEEELVS 148
           CVAYPQS++VI+THKEEEL +
Sbjct: 124 CVAYPQSDLVIETHKEEELTA 142

[Close]

BLAST of CmoCh16G004200 vs. TrEMBL
Match: A0A067L2U1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04972 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.6e-51
Identity = 100/145 (68.97%), Postives = 120/145 (82.76%), Query Frame = 1


Query: 3   SAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKDSTLGGRLVAKAVYSVKLLTPEG 62
           ++  LS A ++T   ++QP TSLR++ N GQ LFGLK S  GG+  A A Y VKLLTPEG
Sbjct: 2   ASTALSSAMVSTSFTRRQPVTSLRALPNVGQALFGLKSSR-GGKFKAMASYKVKLLTPEG 61

Query: 63  EKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQIEDG 122
           EK   CPDDVYILD AEE G+DLPYSCRAGSCSSCAGKVVGG+V+QSDGS+LDD+Q+E+G
Sbjct: 62  EKVIECPDDVYILDAAEEAGVDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQMEEG 121

Query: 123 WVLTCVAYPQSNVVIQTHKEEELVS 148
           WVLTCVAYP S+VVI+THKEE+LV+
Sbjct: 122 WVLTCVAYPTSDVVIETHKEEDLVA 145

[Close]

BLAST of CmoCh16G004200 vs. TrEMBL
Match: A0A151UBX8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_021070 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.0e-50
Identity = 100/147 (68.03%), Postives = 121/147 (82.31%), Query Frame = 1


Query: 1   MASAPVLSGATINTILLQKQP-ATSLRSVSNFGQGLFGLKDSTLGGRLVAKAVYSVKLLT 60
           MA+ P LSG  ++T  L++QP  TSL++  N GQ +FGLK    GGR+ A A+Y VKLLT
Sbjct: 1   MATTPALSGTMVSTSFLRRQPMTTSLKAFPNVGQAVFGLKGGR-GGRVTAMALYKVKLLT 60

Query: 61  PEGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQI 120
           PEG +EF CPDDVYI+D AEE+GIDLPYSCRAGSCSSCAGKV+ G+V+QSDGS+LDD+QI
Sbjct: 61  PEGPQEFECPDDVYIVDHAEELGIDLPYSCRAGSCSSCAGKVIEGKVDQSDGSFLDDEQI 120

Query: 121 EDGWVLTCVAYPQSNVVIQTHKEEELV 147
             GWVLTCVA P+SNVVI+THKEEEL+
Sbjct: 121 NGGWVLTCVAQPRSNVVIETHKEEELI 146

[Close]

BLAST of CmoCh16G004200 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 176.0 bits (445), Expect = 1.7e-44
Identity = 90/147 (61.22%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 3   SAPVLSGATINTILLQKQPAT-SLRSVSNFG-QGLFGLKDSTL-GGRLVAKAVYSVKLLT 62
           ++  LS A + T  +++ PA  SLRS+ +   Q LFGLK  T  GGR+ A A Y VK +T
Sbjct: 2   ASTALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFIT 61

Query: 63  PEGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQI 122
           PEGE E  C DDVY+LD AEE GIDLPYSCRAGSCSSCAGKVV G V+QSD S+LDD+QI
Sbjct: 62  PEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 121

Query: 123 EDGWVLTCVAYPQSNVVIQTHKEEELV 147
            +G+VLTC AYP S+V I+THKEE++V
Sbjct: 122 GEGFVLTCAAYPTSDVTIETHKEEDIV 148

[Close]

BLAST of CmoCh16G004200 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 174.5 bits (441), Expect = 4.9e-44
Identity = 88/148 (59.46%), Postives = 110/148 (74.32%), Query Frame = 1


Query: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFG-QGLFGLKDSTL-GGRLVAKAVYSVKLL 60
           MAS  + S     + L ++Q   SLRS+     Q LFGLK ST  GGR+ A A Y VK +
Sbjct: 1   MASTALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFI 60

Query: 61  TPEGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQ 120
           TPEGE+E  C +DVY+LD AEE G+DLPYSCRAGSCSSCAGKVV G ++QSD S+LDD+Q
Sbjct: 61  TPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQ 120

Query: 121 IEDGWVLTCVAYPQSNVVIQTHKEEELV 147
           + +G+VLTCVAYP S+VVI+THKEE ++
Sbjct: 121 MSEGYVLTCVAYPTSDVVIETHKEEAIM 148

[Close]

BLAST of CmoCh16G004200 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 151.8 bits (382), Expect = 3.4e-37
Identity = 79/141 (56.03%), Postives = 95/141 (67.38%), Query Frame = 1


Query: 6   VLSGATINTILLQKQPATSLRSVSNFGQGLFGLKDSTLGGRLVAKAVYSVKLLTPEG-EK 65
           VL   T N ++  K    S+ S     +  FGLK S   G     AVY VKLL P+G E 
Sbjct: 15  VLRSQTTNKLITNKSYNLSVGSTKRVSRS-FGLKCSANSGGATMSAVYKVKLLGPDGQED 74

Query: 66  EFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQIEDGWV 125
           EF   DD YILD AEE G+DLPYSCRAG+CS+CAG++V G V+QSDGS+L+D  +E G+V
Sbjct: 75  EFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYV 134

Query: 126 LTCVAYPQSNVVIQTHKEEEL 146
           LTCVAYPQS+ VI THKE EL
Sbjct: 135 LTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of CmoCh16G004200 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-25
Identity = 53/113 (46.90%), Postives = 81/113 (71.68%), Query Frame = 1


Query: 36  FGLKDSTLG-GRLVAKAVYSVKLLTPEGEK-EFMCPDDVYILDQAEEIGIDLPYSCRAGS 95
           FGL  S    G++ AK    VKL++PEGE+ E    +D  IL+ AE  G++LPYSCR+G+
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 96  CSSCAGKVVGGQVEQSDGSYLDDDQIEDGWVLTCVAYPQSNVVIQTHKEEELV 147
           C +C GK+V G+V+QS GS+L+++QI+ G++LTC+A P  + V+ THK+ +L+
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDLI 148

[Close]

BLAST of CmoCh16G004200 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-14
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 1


Query: 45  GRLVAKAVYSVKLLTPEGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGG 104
           GR++A+A Y V +       E     D  IL +A + G+D+PY C  G C +C  K+V G
Sbjct: 46  GRIIARA-YKVVVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTG 105

Query: 105 QVEQSDGSYLDDDQIEDGWVLTCVAYPQSNVVIQTHKEEELVS 148
            V+QS G  L DD +E G+ L C +YP S+  I+   EEEL+S
Sbjct: 106 TVDQS-GGMLSDDVVERGYTLLCASYPTSDCHIKMIPEEELLS 146

[Close]

BLAST of CmoCh16G004200 vs. NCBI nr
Match: gi|659112076|ref|XP_008456053.1| (PREDICTED: ferredoxin-like [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 3.8e-54
Identity = 108/148 (72.97%), Postives = 125/148 (84.46%), Query Frame = 1


Query: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKD-STLGGRLVAKAVYSVKLLT 60
           MAS+P LS AT+NT  L+KQPAT L SV NFGQ LFGLK  S+ GGR++A A Y+VKL+T
Sbjct: 1   MASSPALSSATLNTSFLRKQPATRLGSVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PEGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQI 120
           P GE EF C DD YILD+AEE+G DLPYSCRAGSCSSCAGKVV G+V+QSDGSYLD+DQ+
Sbjct: 61  PAGETEFKCQDDDYILDRAEEMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLDEDQM 120

Query: 121 EDGWVLTCVAYPQSNVVIQTHKEEELVS 148
            +GWVLTCVAYPQS+VVI+THKEE L S
Sbjct: 121 NEGWVLTCVAYPQSDVVIETHKEEYLFS 148

[Close]

BLAST of CmoCh16G004200 vs. NCBI nr
Match: gi|1009124224|ref|XP_015878951.1| (PREDICTED: ferredoxin [Ziziphus jujuba])

HSP 1 Score: 218.8 bits (556), Expect = 6.4e-54
Identity = 106/147 (72.11%), Postives = 123/147 (83.67%), Query Frame = 1


Query: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKDSTLGGRLVAKAVYSVKLLTP 60
           MA+A  LSG  ++T  +++QP TSLRS+ N GQ LFGLK S  GGR+ A A Y VKL+TP
Sbjct: 1   MATAAALSGTMVSTSFMRRQPVTSLRSLPNVGQALFGLKSSR-GGRVTAMASYKVKLVTP 60

Query: 61  EGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQIE 120
           +G +EF CPDDVYILD AEEIGIDLPYSCRAGSCSSCAGKVV G V+QSDGS+LDD+QIE
Sbjct: 61  DGPQEFECPDDVYILDHAEEIGIDLPYSCRAGSCSSCAGKVVQGSVDQSDGSFLDDEQIE 120

Query: 121 DGWVLTCVAYPQSNVVIQTHKEEELVS 148
            GWVLTCVAYPQS+VVI+THKEEEL +
Sbjct: 121 SGWVLTCVAYPQSDVVIETHKEEELTA 146

[Close]

BLAST of CmoCh16G004200 vs. NCBI nr
Match: gi|449457047|ref|XP_004146260.1| (PREDICTED: ferredoxin-like [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 4.2e-53
Identity = 104/148 (70.27%), Postives = 123/148 (83.11%), Query Frame = 1


Query: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKD-STLGGRLVAKAVYSVKLLT 60
           M S+P LS  T+NT  LQKQP T +R V NFGQ LF LK  S+ GGR++A A Y+VKL+T
Sbjct: 1   MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PEGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQI 120
           P GE EF CPDD YILD+AE++G DLPYSCRAGSCSSCAGKVV G+V+QSDGSYL+DDQ+
Sbjct: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120

Query: 121 EDGWVLTCVAYPQSNVVIQTHKEEELVS 148
           ++GWVLTCVAYPQS+VVI+THKEE L S
Sbjct: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 148

[Close]

BLAST of CmoCh16G004200 vs. NCBI nr
Match: gi|338173755|gb|AEI83424.1| (chloroplast ferredoxin I [Camellia sinensis])

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52
Identity = 106/148 (71.62%), Postives = 123/148 (83.11%), Query Frame = 1


Query: 1   MASAPVLSGATINTILLQKQ-PATSLRSVSNFGQGLFGLKDSTLGGRLVAKAVYSVKLLT 60
           MA A  LS   ++T  LQ+Q P TSLRS+ N GQ LFG+K    GGR+ A A+Y VKLLT
Sbjct: 1   MAMAASLSSTMVSTSFLQRQQPVTSLRSLPNVGQALFGVKGGR-GGRVTAMAMYKVKLLT 60

Query: 61  PEGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQI 120
           PEG +EF CPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGK+ GG+V+QSDGS+LDDDQ+
Sbjct: 61  PEGPQEFECPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKLTGGKVDQSDGSFLDDDQM 120

Query: 121 EDGWVLTCVAYPQSNVVIQTHKEEELVS 148
           + GWVLTCVAYPQS+VVI+THKEEEL +
Sbjct: 121 DGGWVLTCVAYPQSDVVIETHKEEELTA 147

[Close]

BLAST of CmoCh16G004200 vs. NCBI nr
Match: gi|225448219|ref|XP_002269617.1| (PREDICTED: ferredoxin-like [Vitis vinifera])

HSP 1 Score: 209.9 bits (533), Expect = 3.0e-51
Identity = 99/141 (70.21%), Postives = 120/141 (85.11%), Query Frame = 1


Query: 7   LSGATINTILLQKQPATSLRSVSNFGQGLFGLKDSTLGGRLVAKAVYSVKLLTPEGEKEF 66
           LSGA ++T  +++QP TSLR++ N GQ LFGLK     GR+ A AVY VKL+TPEG KEF
Sbjct: 4   LSGAMVSTSFIRRQPVTSLRALPNVGQALFGLKAGR--GRVTAMAVYKVKLITPEGAKEF 63

Query: 67  MCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQIEDGWVLT 126
            CPDDVY+LD AEEIGIDLPYSCRAGSCSSCAG+VV G V+QSDGS+L+D+Q+E+GWVLT
Sbjct: 64  ECPDDVYVLDHAEEIGIDLPYSCRAGSCSSCAGRVVEGTVDQSDGSFLEDEQMEEGWVLT 123

Query: 127 CVAYPQSNVVIQTHKEEELVS 148
           CVAYPQS++VI+THKEEEL +
Sbjct: 124 CVAYPQSDLVIETHKEEELTA 142

The following BLAST results are available for this feature:

BLAST of CmoCh16G004200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FER1_MESCR	3.1e-48	63.01	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1	[more]
FER_CAPAN	2.0e-47	63.83	Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1	[more]
FER1_PEA	4.4e-47	63.76	Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2	[more]
FER1_SOLLC	1.4e-45	64.79	Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1	[more]
FER2_ARATH	3.0e-43	61.22	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1	[more]

BLAST of CmoCh16G004200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAD3_CUCSA	2.9e-53	70.27	Ferredoxin-2 OS=Cucumis sativus GN=Csa_3G222790 PE=4 SV=1	[more]
F8SPG7_CAMSI	8.4e-53	71.62	Chloroplast ferredoxin I OS=Camellia sinensis PE=2 SV=1	[more]
F6HK77_VITVI	2.1e-51	70.21	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00270 PE=4 SV=...	[more]
A0A067L2U1_JATCU	4.6e-51	68.97	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04972 PE=4 SV=1	[more]
A0A151UBX8_CAJCA	1.0e-50	68.03	Uncharacterized protein OS=Cajanus cajan GN=KK1_021070 PE=4 SV=1	[more]

BLAST of CmoCh16G004200 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G60950.1	1.7e-44	61.22	2Fe-2S ferredoxin-like superfamily protein	[more]
AT1G10960.1	4.9e-44	59.46	ferredoxin 1	[more]
AT2G27510.1	3.4e-37	56.03	ferredoxin 3	[more]
AT5G10000.1	1.3e-25	46.90	ferredoxin 4	[more]
AT4G14890.1	2.4e-14	40.78	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of CmoCh16G004200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112076\|ref\|XP_008456053.1\|	3.8e-54	72.97	PREDICTED: ferredoxin-like [Cucumis melo]	[more]
gi\|1009124224\|ref\|XP_015878951.1\|	6.4e-54	72.11	PREDICTED: ferredoxin [Ziziphus jujuba]	[more]
gi\|449457047\|ref\|XP_004146260.1\|	4.2e-53	70.27	PREDICTED: ferredoxin-like [Cucumis sativus]	[more]
gi\|338173755\|gb\|AEI83424.1\|	1.2e-52	71.62	chloroplast ferredoxin I [Camellia sinensis]	[more]
gi\|225448219\|ref\|XP_002269617.1\|	3.0e-51	70.21	PREDICTED: ferredoxin-like [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001041	2Fe-2S_ferredoxin-type
IPR006058	2Fe2S_fd_BS
IPR010241	Fd_pln
IPR012675	Beta-grasp_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0051536	iron-sulfur cluster binding
GO:0051537	2 iron, 2 sulfur cluster binding

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0009639	response to red or far red light
cellular_component	GO:0009536	plastid
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G004200.1	CmoCh16G004200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 60..132 score: 2.7
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 53..143 score: 12
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 46..144 score: 5.39
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 89..97 scor
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAMs	TIGR02008	TIGR02008	coord: 51..145 score: 1.6
IPR012675	Beta-grasp domain	GENE3D	G3DSA:3.10.20.30		coord: 53..146 score: 5.9
None	No IPR available	PANTHER	PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	coord: 24..146 score: 1.4
None	No IPR available	PANTHER	PTHR19370:SF120	FERREDOXIN-1, CHLOROPLASTIC-RELATED	coord: 24..146 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G004200	Cucsa.032940	Cucumber (Gy14) v1	cgycmoB0006
CmoCh16G004200	CmaCh04G005340	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G004200	Cla013019	Watermelon (97103) v1	cmowmB311
CmoCh16G004200	Csa3G222790	Cucumber (Chinese Long) v2	cmocuB307
CmoCh16G004200	MELO3C019438	Melon (DHL92) v3.5.1	cmomeB290
CmoCh16G004200	ClCG05G009510	Watermelon (Charleston Gray)	cmowcgB291
CmoCh16G004200	CSPI03G19080	Wild cucumber (PI 183967)	cmocpiB315
CmoCh16G004200	Lsi05G001640	Bottle gourd (USVL1VR-Ls)	cmolsiB304
CmoCh16G004200	Cp4.1LG01g01870	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G004200	MELO3C019438.2	Melon (DHL92) v3.6.1	cmomedB332
CmoCh16G004200	CsaV3_3G019210	Cucumber (Chinese Long) v3	cmocucB0370
CmoCh16G004200	Cla97C05G091890	Watermelon (97103) v2	cmowmbB332
CmoCh16G004200	Bhi01G001192	Wax gourd	cmowgoB0434
CmoCh16G004200	CsGy3G018990	Cucumber (Gy14) v2	cgybcmoB301
CmoCh16G004200	Carg11316	Silver-seed gourd	carcmoB0898
CmoCh16G004200	Carg13204	Silver-seed gourd	carcmoB0055

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G004200	CmoCh04G005700	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G004200	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G004200	Cucurbita pepo (Zucchini)	cmocpeB307