CsaV3_3G019210 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G019210
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Ferredoxin
Location	chr3 : 14987817 .. 14988263 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAGTTCACCAGCACTTTCCAGTGTGACATTGAACACCTCGTTTCTCCAGAAGCAGCCAACAACAAGGATAAGGTTGGTGTTGAACTTTGGCCAAGATTTGTTTAAGCTGAAGGGTGGCAGCAGCCGAGGTGGGCGAGTGATTGCAATGGCAGAGTACAACGTGAAGTTGATCACACCAACAGGAGAGACGGAGTTCAAGTGCCCGGATGACGAATACATTCTTGATCGAGCTGAGCAAATGGGATTTGATCTTCCATATTCATGTAGAGCAGGGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTATCAGGGAAGGTGGATCAGTCAGATGGGAGCTACCTTGAGGATGATCAGATGGATGAAGGTTGGGTTTTAACTTGTGTTGCTTACCCGCAGTCAGATGTTGTCATTGAGACACACAAGGAGGAATATCTATTTAGTTAG

mRNA sequence

ATGACCAGTTCACCAGCACTTTCCAGTGTGACATTGAACACCTCGTTTCTCCAGAAGCAGCCAACAACAAGGATAAGGTTGGTGTTGAACTTTGGCCAAGATTTGTTTAAGCTGAAGGGTGGCAGCAGCCGAGGTGGGCGAGTGATTGCAATGGCAGAGTACAACGTGAAGTTGATCACACCAACAGGAGAGACGGAGTTCAAGTGCCCGGATGACGAATACATTCTTGATCGAGCTGAGCAAATGGGATTTGATCTTCCATATTCATGTAGAGCAGGGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTATCAGGGAAGGTGGATCAGTCAGATGGGAGCTACCTTGAGGATGATCAGATGGATGAAGGTTGGGTTTTAACTTGTGTTGCTTACCCGCAGTCAGATGTTGTCATTGAGACACACAAGGAGGAATATCTATTTAGTTAG

Coding sequence (CDS)

ATGACCAGTTCACCAGCACTTTCCAGTGTGACATTGAACACCTCGTTTCTCCAGAAGCAGCCAACAACAAGGATAAGGTTGGTGTTGAACTTTGGCCAAGATTTGTTTAAGCTGAAGGGTGGCAGCAGCCGAGGTGGGCGAGTGATTGCAATGGCAGAGTACAACGTGAAGTTGATCACACCAACAGGAGAGACGGAGTTCAAGTGCCCGGATGACGAATACATTCTTGATCGAGCTGAGCAAATGGGATTTGATCTTCCATATTCATGTAGAGCAGGGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTATCAGGGAAGGTGGATCAGTCAGATGGGAGCTACCTTGAGGATGATCAGATGGATGAAGGTTGGGTTTTAACTTGTGTTGCTTACCCGCAGTCAGATGTTGTCATTGAGACACACAAGGAGGAATATCTATTTAGTTAG

Protein sequence

MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLITPTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQMDEGWVLTCVAYPQSDVVIETHKEEYLFS

Homology

[Close]

BLAST of CsaV3_3G019210 vs. NCBI nr
Match: XP_004146260.1 (PREDICTED: ferredoxin-like [Cucumis sativus] >KGN57597.1 Ferredoxin-2 [Cucumis sativus])

HSP 1 Score: 303.1 bits (775), Expect = 5.1e-79
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT 60
           MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT
Sbjct: 1   MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM
Sbjct: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           DEGWVLTCVAYPQSDVVIETHKEEYLFS
Sbjct: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 148

[Close]

BLAST of CsaV3_3G019210 vs. NCBI nr
Match: XP_008456053.1 (PREDICTED: ferredoxin-like [Cucumis melo])

HSP 1 Score: 275.8 bits (704), Expect = 8.7e-71
Identity = 133/148 (89.86%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT 60
           M SSPALSS TLNTSFL+KQP TR+  VLNFGQDLF LKGGSSRGGRVIAMAEYNVKLIT
Sbjct: 1   MASSPALSSATLNTSFLRKQPATRLGSVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           P GETEFKC DD+YILDRAE+MGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYL++DQM
Sbjct: 61  PAGETEFKCQDDDYILDRAEEMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLDEDQM 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           +EGWVLTCVAYPQSDVVIETHKEEYLFS
Sbjct: 121 NEGWVLTCVAYPQSDVVIETHKEEYLFS 148

[Close]

BLAST of CsaV3_3G019210 vs. NCBI nr
Match: XP_023552303.1 (ferredoxin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 113/148 (76.35%), Postives = 127/148 (85.81%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT 60
           M S+P LS  T+NT  LQKQP T +R V NFGQ LF LK GSSRGGR++AMAEYNVKLIT
Sbjct: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLK-GSSRGGRLVAMAEYNVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           P GE EF CPDD Y+LD+AE+MG DLPYSCRAGSCSSCAGKVV GKV+QSDGS+L+DDQ+
Sbjct: 61  PEGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQI 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           +EGWVLTCVAYPQSD+VIETHKEE L S
Sbjct: 121 EEGWVLTCVAYPQSDIVIETHKEEDLVS 147

[Close]

BLAST of CsaV3_3G019210 vs. NCBI nr
Match: XP_022136608.1 (ferredoxin [Momordica charantia])

HSP 1 Score: 229.2 bits (583), Expect = 9.3e-57
Identity = 112/148 (75.68%), Postives = 124/148 (83.78%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT 60
           M SS ALS   ++TSFL+KQP   +R V NFGQ LF LKGG SRGGRV AMA Y VKLIT
Sbjct: 1   MASSTALSGAMMSTSFLRKQPAGGLRSVSNFGQGLFGLKGG-SRGGRVTAMATYKVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           P GE EF CPDD Y+LD+AE+ GFDLPYSCRAGSCSSCAGKVVSGKVDQSD S+L+DDQ+
Sbjct: 61  PEGEKEFSCPDDVYVLDQAEEQGFDLPYSCRAGSCSSCAGKVVSGKVDQSDNSFLDDDQL 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           +EGWVLTCVAYPQSD+VIETHKEE L S
Sbjct: 121 EEGWVLTCVAYPQSDIVIETHKEEELVS 147

[Close]

BLAST of CsaV3_3G019210 vs. NCBI nr
Match: XP_022984878.1 (ferredoxin-A-like [Cucurbita maxima])

HSP 1 Score: 219.2 bits (557), Expect = 9.7e-54
Identity = 105/148 (70.95%), Postives = 123/148 (83.11%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT 60
           M S+P LS  T+NT  LQKQP T +R V NFGQ LF LK  S+ GGR++A A Y+VKL+T
Sbjct: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLK-DSTLGGRLVAKAVYSVKLLT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           P GE EF CPDD YILD+AE++G DLPYSCRAGSCSSCAGKVV GKV+QSDGSYL+DDQ+
Sbjct: 61  PEGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSYLDDDQI 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           ++GWVLTCVAYPQS++VIETHKEE L S
Sbjct: 121 EDGWVLTCVAYPQSNIVIETHKEEELVS 147

[Close]

BLAST of CsaV3_3G019210 vs. TAIR10
Match: AT1G10960.1 (ferredoxin 1)

HSP 1 Score: 186.8 bits (473), Expect = 9.6e-48
Identity = 94/144 (65.28%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 3   SSPALSSVTLNTSFLQKQPTTRIRLVLNFG--QDLFKLKGGSSRGGRVIAMAEYNVKLIT 62
           +S ALSS  ++TSFL++Q T      L F   Q LF LK  ++RGGRV AMA Y VK IT
Sbjct: 2   ASTALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFIT 61

Query: 63  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 122
           P GE E +C +D Y+LD AE+ G DLPYSCRAGSCSSCAGKVVSG +DQSD S+L+D+QM
Sbjct: 62  PEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQM 121

Query: 123 DEGWVLTCVAYPQSDVVIETHKEE 145
            EG+VLTCVAYP SDVVIETHKEE
Sbjct: 122 SEGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of CsaV3_3G019210 vs. TAIR10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 181.0 bits (458), Expect = 5.3e-46
Identity = 91/144 (63.19%), Postives = 109/144 (75.69%), Query Frame = 0


Query: 3   SSPALSSVTLNTSFLQKQPT-TRIRLVLNFG-QDLFKLKGGSSRGGRVIAMAEYNVKLIT 62
           +S ALSS  + TSF+++ P    +R + +   Q LF LK G++RGGRV AMA Y VK IT
Sbjct: 2   ASTALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFIT 61

Query: 63  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 122
           P GE E +C DD Y+LD AE+ G DLPYSCRAGSCSSCAGKVVSG VDQSD S+L+D+Q+
Sbjct: 62  PEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 121

Query: 123 DEGWVLTCVAYPQSDVVIETHKEE 145
            EG+VLTC AYP SDV IETHKEE
Sbjct: 122 GEGFVLTCAAYPTSDVTIETHKEE 145

[Close]

BLAST of CsaV3_3G019210 vs. TAIR10
Match: AT2G27510.1 (ferredoxin 3)

HSP 1 Score: 148.3 bits (373), Expect = 3.8e-36
Identity = 79/153 (51.63%), Postives = 104/153 (67.97%), Query Frame = 0


Query: 7   LSSVTLNTSFLQKQPTTRIRLVLNFGQDL-----------FKLKGGSSRGGRVIAMAEYN 66
           +SS ++  + L+ Q T   +L+ N   +L           F LK  ++ GG  ++ A Y 
Sbjct: 6   ISSTSMTKAVLRSQTTN--KLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMS-AVYK 65

Query: 67  VKLITPTG-ETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSY 126
           VKL+ P G E EF+  DD+YILD AE+ G DLPYSCRAG+CS+CAG++VSG VDQSDGS+
Sbjct: 66  VKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSF 125

Query: 127 LEDDQMDEGWVLTCVAYPQSDVVIETHKEEYLF 148
           LED  +++G+VLTCVAYPQSD VI THKE  LF
Sbjct: 126 LEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of CsaV3_3G019210 vs. TAIR10
Match: AT5G10000.1 (ferredoxin 4)

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-27
Identity = 64/132 (48.48%), Postives = 85/132 (64.39%), Query Frame = 0


Query: 18  QKQPTTRIRLVLNFGQDLFKLKGGSSRG--GRVIAMAEYNVKLITPTG-ETEFKCPDDEY 77
           Q Q TTR+     FG         SSRG  G+V A     VKLI+P G E E +  +D  
Sbjct: 23  QAQLTTRLNNTTYFGL-------SSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCC 82

Query: 78  ILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQMDEGWVLTCVAYPQS 137
           IL+ AE  G +LPYSCR+G+C +C GK+VSGKVDQS GS+LE++Q+ +G++LTC+A P  
Sbjct: 83  ILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLE 142

Query: 138 DVVIETHKEEYL 147
           D V+ THK+  L
Sbjct: 143 DCVVYTHKQSDL 147

[Close]

BLAST of CsaV3_3G019210 vs. TAIR10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-16
Identity = 45/103 (43.69%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 46  GRVIAMAEYNVKLITPTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSG 105
           GR+IA A Y V +      TE +   DE IL +A   G D+PY C  G C +C  K+V+G
Sbjct: 46  GRIIARA-YKVVVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTG 105

Query: 106 KVDQSDGSYLEDDQMDEGWVLTCVAYPQSDVVIETHKEEYLFS 149
            VDQS G  L DD ++ G+ L C +YP SD  I+   EE L S
Sbjct: 106 TVDQS-GGMLSDDVVERGYTLLCASYPTSDCHIKMIPEEELLS 146

[Close]

BLAST of CsaV3_3G019210 vs. Swiss-Prot
Match: sp|O04090|FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.7e-46
Identity = 94/144 (65.28%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 3   SSPALSSVTLNTSFLQKQPTTRIRLVLNFG--QDLFKLKGGSSRGGRVIAMAEYNVKLIT 62
           +S ALSS  ++TSFL++Q T      L F   Q LF LK  ++RGGRV AMA Y VK IT
Sbjct: 2   ASTALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFIT 61

Query: 63  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 122
           P GE E +C +D Y+LD AE+ G DLPYSCRAGSCSSCAGKVVSG +DQSD S+L+D+QM
Sbjct: 62  PEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQM 121

Query: 123 DEGWVLTCVAYPQSDVVIETHKEE 145
            EG+VLTCVAYP SDVVIETHKEE
Sbjct: 122 SEGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of CsaV3_3G019210 vs. Swiss-Prot
Match: sp|O04683|FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.0e-46
Identity = 91/144 (63.19%), Postives = 106/144 (73.61%), Query Frame = 0


Query: 3   SSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLITPT 62
           ++ ALS  T++T+F  K P     L  N G+ LF LK  +SR GRV AMA Y V L+TP 
Sbjct: 4   TTAALSGATMSTAFAPKTPPMTAALPTNVGRALFGLKSSASR-GRVTAMAAYKVTLVTPE 63

Query: 63  GETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQMDE 122
           G+ E +CPDD YILD AE+ G DLPYSCRAGSCSSCAGKV SG V+Q DGS+L+DDQ+ E
Sbjct: 64  GKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKE 123

Query: 123 GWVLTCVAYPQSDVVIETHKEEYL 147
           GWVLTCVAYP  DV IETHKEE L
Sbjct: 124 GWVLTCVAYPTGDVTIETHKEEEL 146

[Close]

BLAST of CsaV3_3G019210 vs. Swiss-Prot
Match: sp|Q9ZTS2|FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 8.6e-46
Identity = 87/142 (61.27%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 6   ALSSVTLNTSFLQKQP-TTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLITPTGE 65
           ++S+  ++TSF+ ++P  T ++ + N G+ LF LK  S+ GG+V  MA Y VKLITP G 
Sbjct: 3   SVSATMISTSFMPRKPAVTSLKPIPNVGEALFGLK--SANGGKVTCMASYKVKLITPDGP 62

Query: 66  TEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQMDEGW 125
            EF CPD+ YILD+AE+ G DLPYSCRAGSCSSCAGK+  G VDQ+DG++L+DDQ++EGW
Sbjct: 63  IEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGW 122

Query: 126 VLTCVAYPQSDVVIETHKEEYL 147
           VLTCVAYPQSDV IETHKE  L
Sbjct: 123 VLTCVAYPQSDVTIETHKEAEL 142

[Close]

BLAST of CsaV3_3G019210 vs. Swiss-Prot
Match: sp|P16972|FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 9.5e-45
Identity = 91/144 (63.19%), Postives = 109/144 (75.69%), Query Frame = 0


Query: 3   SSPALSSVTLNTSFLQKQPT-TRIRLVLNFG-QDLFKLKGGSSRGGRVIAMAEYNVKLIT 62
           +S ALSS  + TSF+++ P    +R + +   Q LF LK G++RGGRV AMA Y VK IT
Sbjct: 2   ASTALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFIT 61

Query: 63  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 122
           P GE E +C DD Y+LD AE+ G DLPYSCRAGSCSSCAGKVVSG VDQSD S+L+D+Q+
Sbjct: 62  PEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 121

Query: 123 DEGWVLTCVAYPQSDVVIETHKEE 145
            EG+VLTC AYP SDV IETHKEE
Sbjct: 122 GEGFVLTCAAYPTSDVTIETHKEE 145

[Close]

BLAST of CsaV3_3G019210 vs. Swiss-Prot
Match: sp|Q43517|FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SEND33 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-44
Identity = 87/142 (61.27%), Postives = 108/142 (76.06%), Query Frame = 0


Query: 6   ALSSVTLNTSFLQKQP-TTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLITPTGE 65
           ++S   ++TSFL ++P  T ++ + N G+ LF LK G  R GR+  MA Y VKLITP G 
Sbjct: 3   SISGTMISTSFLPRKPAVTSLKAISNVGEALFGLKSG--RNGRITCMASYKVKLITPEGP 62

Query: 66  TEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQMDEGW 125
            EF+CPDD YILD+AE+ G DLPYSCRAGSCSSCAGKV +G VDQSDG++L++DQ   G+
Sbjct: 63  IEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGF 122

Query: 126 VLTCVAYPQSDVVIETHKEEYL 147
           VLTCVAYP+ DV IETHKEE L
Sbjct: 123 VLTCVAYPKGDVTIETHKEEEL 142

[Close]

BLAST of CsaV3_3G019210 vs. TrEMBL
Match: tr|A0A0A0LAD3|A0A0A0LAD3_CUCSA (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G222790 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 3.4e-79
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT 60
           MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT
Sbjct: 1   MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM
Sbjct: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           DEGWVLTCVAYPQSDVVIETHKEEYLFS
Sbjct: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 148

[Close]

BLAST of CsaV3_3G019210 vs. TrEMBL
Match: tr|A0A1S3C2F7|A0A1S3C2F7_CUCME (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496101 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 5.8e-71
Identity = 133/148 (89.86%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT 60
           M SSPALSS TLNTSFL+KQP TR+  VLNFGQDLF LKGGSSRGGRVIAMAEYNVKLIT
Sbjct: 1   MASSPALSSATLNTSFLRKQPATRLGSVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           P GETEFKC DD+YILDRAE+MGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYL++DQM
Sbjct: 61  PAGETEFKCQDDDYILDRAEEMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLDEDQM 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           +EGWVLTCVAYPQSDVVIETHKEEYLFS
Sbjct: 121 NEGWVLTCVAYPQSDVVIETHKEEYLFS 148

[Close]

BLAST of CsaV3_3G019210 vs. TrEMBL
Match: tr|F8SPG7|F8SPG7_CAMSI (Ferredoxin OS=Camellia sinensis OX=4442 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 5.1e-51
Identity = 104/147 (70.75%), Postives = 120/147 (81.63%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQK-QPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLI 60
           M  + +LSS  ++TSFLQ+ QP T +R + N GQ LF +KGG  RGGRV AMA Y VKL+
Sbjct: 1   MAMAASLSSTMVSTSFLQRQQPVTSLRSLPNVGQALFGVKGG--RGGRVTAMAMYKVKLL 60

Query: 61  TPTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQ 120
           TP G  EF+CPDD YILD+AE++G DLPYSCRAGSCSSCAGK+  GKVDQSDGS+L+DDQ
Sbjct: 61  TPEGPQEFECPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKLTGGKVDQSDGSFLDDDQ 120

Query: 121 MDEGWVLTCVAYPQSDVVIETHKEEYL 147
           MD GWVLTCVAYPQSDVVIETHKEE L
Sbjct: 121 MDGGWVLTCVAYPQSDVVIETHKEEEL 145

[Close]

BLAST of CsaV3_3G019210 vs. TrEMBL
Match: tr|A0A2P5BHJ1|A0A2P5BHJ1_9ROSA (Ferredoxin OS=Trema orientalis OX=63057 GN=TorRG33x02_320950 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.5e-50
Identity = 100/145 (68.97%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 3   SSPALSSVTLNTSFLQKQP-TTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLITP 62
           ++ ALSS  ++TSF+++QP TT +R + N GQ LF LK   SRGGRV AMA Y VKL+TP
Sbjct: 4   TAAALSSAMVSTSFVRRQPTTTSLRALPNVGQALFGLKATPSRGGRVTAMAAYKVKLLTP 63

Query: 63  TGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQMD 122
            GE EF+CPDD Y+LD+AE++G DLPYSCRAGSCSSC GKVV G+VDQSD S+L+DDQ+ 
Sbjct: 64  EGEVEFECPDDVYVLDQAEEVGIDLPYSCRAGSCSSCVGKVVKGEVDQSDNSFLDDDQVA 123

Query: 123 EGWVLTCVAYPQSDVVIETHKEEYL 147
            GWVLTCVAYPQSDVVIETHKEE L
Sbjct: 124 GGWVLTCVAYPQSDVVIETHKEEEL 148

[Close]

BLAST of CsaV3_3G019210 vs. TrEMBL
Match: tr|A0A200QV92|A0A200QV92_9MAGN (Ferredoxin OS=Macleaya cordata OX=56857 GN=BVC80_8551g11 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.3e-50
Identity = 99/141 (70.21%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 6   ALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLITPTGET 65
           +LS   ++TSF+++QP T +R   N GQ LF LK G    GR+ AMA Y VKL+TP G  
Sbjct: 4   SLSGTMVSTSFIRRQPVTSLRSFSNVGQALFGLKAGR---GRITAMATYKVKLVTPEGTQ 63

Query: 66  EFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQMDEGWV 125
           EF+CPDD YILD AE++G DLPYSCRAGSCSSCAGKVV GKVDQSDGS+L+DDQM+EGWV
Sbjct: 64  EFECPDDVYILDHAEEIGVDLPYSCRAGSCSSCAGKVVEGKVDQSDGSFLDDDQMEEGWV 123

Query: 126 LTCVAYPQSDVVIETHKEEYL 147
           LTCVAYPQSDVVIETHKEE L
Sbjct: 124 LTCVAYPQSDVVIETHKEEEL 141

The following BLAST results are available for this feature:

BLAST of CsaV3_3G019210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146260.1	5.1e-79	100.00	PREDICTED: ferredoxin-like [Cucumis sativus] >KGN57597.1 Ferredoxin-2 [Cucumis s...	[more]
XP_008456053.1	8.7e-71	89.86	PREDICTED: ferredoxin-like [Cucumis melo]	[more]
XP_023552303.1	1.3e-58	76.35	ferredoxin-like [Cucurbita pepo subsp. pepo]	[more]
XP_022136608.1	9.3e-57	75.68	ferredoxin [Momordica charantia]	[more]
XP_022984878.1	9.7e-54	70.95	ferredoxin-A-like [Cucurbita maxima]	[more]

BLAST of CsaV3_3G019210 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10960.1	9.6e-48	65.28	ferredoxin 1	[more]
AT1G60950.1	5.3e-46	63.19	2Fe-2S ferredoxin-like superfamily protein	[more]
AT2G27510.1	3.8e-36	51.63	ferredoxin 3	[more]
AT5G10000.1	1.9e-27	48.48	ferredoxin 4	[more]
AT4G14890.1	1.5e-16	43.69	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of CsaV3_3G019210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04090\|FER1_ARATH	1.7e-46	65.28	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1	[more]
sp\|O04683\|FER1_MESCR	3.0e-46	63.19	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
sp\|Q9ZTS2\|FER_CAPAN	8.6e-46	61.27	Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1	[more]
sp\|P16972\|FER2_ARATH	9.5e-45	63.19	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1	[more]
sp\|Q43517\|FER1_SOLLC	1.6e-44	61.27	Ferredoxin-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SEND33 PE=2 SV=1	[more]

BLAST of CsaV3_3G019210 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAD3\|A0A0A0LAD3_CUCSA	3.4e-79	100.00	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G222790 PE=3 SV=1	[more]
tr\|A0A1S3C2F7\|A0A1S3C2F7_CUCME	5.8e-71	89.86	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496101 PE=3 SV=1	[more]
tr\|F8SPG7\|F8SPG7_CAMSI	5.1e-51	70.75	Ferredoxin OS=Camellia sinensis OX=4442 PE=2 SV=1	[more]
tr\|A0A2P5BHJ1\|A0A2P5BHJ1_9ROSA	2.5e-50	68.97	Ferredoxin OS=Trema orientalis OX=63057 GN=TorRG33x02_320950 PE=3 SV=1	[more]
tr\|A0A200QV92\|A0A200QV92_9MAGN	3.3e-50	70.21	Ferredoxin OS=Macleaya cordata OX=56857 GN=BVC80_8551g11 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0051536	iron-sulfur cluster binding
GO:0009055	electron carrier activity

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

Vocabulary: **INTERPRO**
Term	Definition
IPR036010	2Fe-2S_ferredoxin-like_sf
IPR006058	2Fe2S_fd_BS
IPR010241	Fd_pln
IPR001041	2Fe-2S_ferredoxin-type
IPR012675	Beta-grasp_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0009639	response to red or far red light
biological_process	GO:0009688	abscisic acid biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009536	plastid
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G019210.1	CsaV3_3G019210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	G3DSA:3.10.20.30		coord: 51..147 e-value: 4.4E-34 score: 118.3
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 62..133 e-value: 4.9E-19 score: 68.0
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 54..144 score: 12.636
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 56..139 e-value: 2.90252E-31 score: 108.251
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 53..146 e-value: 8.6E-48 score: 158.1
None	No IPR available	PANTHER	PTHR43112	FAMILY NOT NAMED	coord: 32..146
None	No IPR available	PANTHER	PTHR43112:SF4	FERREDOXIN-3, CHLOROPLASTIC-RELATED	coord: 32..146
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 90..98
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	SSF54292	2Fe-2S ferredoxin-like	coord: 35..145

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G019210	CSPI03G19080	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G019210	Cucsa.032940	Cucumber (Gy14) v1	cgycucB006
CsaV3_3G019210	CmaCh04G005340	Cucurbita maxima (Rimu)	cmacucB0829
CsaV3_3G019210	CmoCh16G004200	Cucurbita moschata (Rifu)	cmocucB0370
CsaV3_3G019210	CmoCh04G005700	Cucurbita moschata (Rifu)	cmocucB0814
CsaV3_3G019210	Cp4.1LG01g01870	Cucurbita pepo (Zucchini)	cpecucB0484
CsaV3_3G019210	CsGy3G018990	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G019210	Carg13204	Silver-seed gourd	carcucB0048
CsaV3_3G019210	Carg11316	Silver-seed gourd	carcucB0687
CsaV3_3G019210	Cla013019	Watermelon (97103) v1	cucwmB252
CsaV3_3G019210	MELO3C019438	Melon (DHL92) v3.5.1	cucmeB247
CsaV3_3G019210	ClCG05G009510	Watermelon (Charleston Gray)	cucwcgB238
CsaV3_3G019210	Lsi05G001640	Bottle gourd (USVL1VR-Ls)	cuclsiB230
CsaV3_3G019210	MELO3C019438.2	Melon (DHL92) v3.6.1	cucmedB246
CsaV3_3G019210	Cla97C05G091890	Watermelon (97103) v2	cucwmbB217
CsaV3_3G019210	Bhi01G001192	Wax gourd	cucwgoB287

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G019210	Cucurbita maxima (Rimu)	cmacucB0373
CsaV3_3G019210	Cucurbita pepo (Zucchini)	cpecucB0247