CsGy3G018990 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G018990
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Ferredoxin
Location	Chr3 : 15219868 .. 15221094 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGCACCACTGCAATCACCTCCCCATTTCCGGCCACCTCCTTCATCCGTCGGAATCCTACCGGTGGAGTGAGTTTCAAGCCATTTCCCAACATGGGTGAGTCTCTGTACGGGCTGAAACACCGCGGCGGACGACTGGCGATGAAGGCATACAAGGTGAAACTCATAACCCCAGATGGAGAGAAAACGGTTGAATGTGATGCTGATCTTTACATTTTGGATGCGGCTGAGGAAAGTGGGCTTGATCTTCCTTACTCTTGCAGAGCTGGGGCTTGTTCTTCATGCGTTGGGAAAGTGGTATCAGGGAAATTGGATCAATCTGATCAGAGTTTTCTTGATGATGAGCAAGTGGCTGAAGGTTGGGTTTTAACTTGTGTTGCTAGGCCTGAGTCTGATCTTGTAATTGAGACTCACAAGGAGGATTCCTTTGCTGGTTAAAACAGAGGAACAAGAAGGGATTAAACTTATTTTTTCTTTTTATCTTTTCTATCTTTGTTGATGAGAGTAAGCATAATGGACATTGTTTTCTTAGCTTGATGATGATGATGATGATGATGATGATATCTCTCTTTTAAAGTGTTTGTTGAAAATTGTATTGTTCATTACTGGTTTAAGTTTATTTACAACTCGGGTTTTGTTTATCTGTTGTTGGGTTCTTAACTTTCATTTCTTTTTGGCTTCTTTACTTTCATGTGAATGATACTGTCTTTTAGCTTCACGTATATCACTTTAGCTCTCCATTGTAAATCATTTTGTTTATTGTTTTATTTATATGTTGTTGGGTGGTTGTTATTTATTTCTCTTTGATATCCAAGTTGTGAATGATACTATAGATTAATCCATCTTTATTTTGGGGAATGGTAAAAAATAGTCCATTTTTTAGGGCAATATATGAGTGAAAAGTTCAATTTACCCTCAACGAAATTTTCCTTCTCTTTCACCTAAATCACAACAAACTCAATTTCTTCTTCCACTTGTTATCTTCTTCCTCTAACCTCTTCCAATCGTGGAGGACCAATTTCAATTTGATCTTTTAGGGCTTTCTTCTTCCTAAAGGACATTAAGGAACAAAATATTGCTGACAGACTAAGATGGTGAGGAGAATTGTGGCTTGTTAAGAGGTGAGAGGAAGAAGGAAAGAAGAATTACTTTTCAGTTGTAGTTGCTGTTGACCGTCGTAGGGTGTTGAGTCGTGAGGGGAGAACCAATGCATGCGTGAGATAA

mRNA sequence

ATGAGCAGCACCACTGCAATCACCTCCCCATTTCCGGCCACCTCCTTCATCCGTCGGAATCCTACCGGTGGAGTGAGTTTCAAGCCATTTCCCAACATGGGTGAGTCTCTGTACGGGCTGAAACACCGCGGCGGACGACTGGCGATGAAGGCATACAAGGTGAAACTCATAACCCCAGATGGAGAGAAAACGGTTGAATGTGATGCTGATCTTTACATTTTGGATGCGGCTGAGGAAAGTGGGCTTGATCTTCCTTACTCTTGCAGAGCTGGGGCTTGTTCTTCATGCGTTGGGAAAGTGGTATCAGGGAAATTGGATCAATCTGATCAGAGTTTTCTTGATGATGAGCAAGTGGCTGAAGGTTGGGTTTTAACTTGTGTTGCTAGGCCTGAGTCTGATCTTGTAATTGAGACTCACAAGGAGGATTCCTTTGCTGTTGCTGTTGACCGTCGTAGGGTGTTGAGTCGTGAGGGGAGAACCAATGCATGCGTGAGATAA

Coding sequence (CDS)

ATGAGCAGCACCACTGCAATCACCTCCCCATTTCCGGCCACCTCCTTCATCCGTCGGAATCCTACCGGTGGAGTGAGTTTCAAGCCATTTCCCAACATGGGTGAGTCTCTGTACGGGCTGAAACACCGCGGCGGACGACTGGCGATGAAGGCATACAAGGTGAAACTCATAACCCCAGATGGAGAGAAAACGGTTGAATGTGATGCTGATCTTTACATTTTGGATGCGGCTGAGGAAAGTGGGCTTGATCTTCCTTACTCTTGCAGAGCTGGGGCTTGTTCTTCATGCGTTGGGAAAGTGGTATCAGGGAAATTGGATCAATCTGATCAGAGTTTTCTTGATGATGAGCAAGTGGCTGAAGGTTGGGTTTTAACTTGTGTTGCTAGGCCTGAGTCTGATCTTGTAATTGAGACTCACAAGGAGGATTCCTTTGCTGTTGCTGTTGACCGTCGTAGGGTGTTGAGTCGTGAGGGGAGAACCAATGCATGCGTGAGATAA

Protein sequence

MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKHRGGRLAMKAYKVKLITPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAEGWVLTCVARPESDLVIETHKEDSFAVAVDRRRVLSREGRTNACVR

Homology

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BLAST of CsGy3G018990 vs. NCBI nr
Match: XP_004146259.1 (PREDICTED: ferredoxin, leaf L-A-like [Cucumis sativus] >KGN57598.1 hypothetical protein Csa_3G222800 [Cucumis sativus])

HSP 1 Score: 296.6 bits (758), Expect = 5.3e-77
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKHRGGRLAMKAYKVKLITPD 60
           MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKHRGGRLAMKAYKVKLITPD
Sbjct: 1   MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKHRGGRLAMKAYKVKLITPD 60

Query: 61  GEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAE 120
           GEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAE
Sbjct: 61  GEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAE 120

Query: 121 GWVLTCVARPESDLVIETHKEDSFA 146
           GWVLTCVARPESDLVIETHKEDSFA
Sbjct: 121 GWVLTCVARPESDLVIETHKEDSFA 145

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BLAST of CsGy3G018990 vs. NCBI nr
Match: XP_008456052.1 (PREDICTED: ferredoxin-like [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 4.6e-65
Identity = 121/145 (83.45%), Postives = 132/145 (91.03%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKHRGGRLAMKAYKVKLITPD 60
           M STTA TSPFPATSF+RRNPTGGVS KPFPNMGESL+GLKHRGGR+   AY VKLITP+
Sbjct: 1   MGSTTAFTSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVTAMAYNVKLITPE 60

Query: 61  GEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAE 120
           GEK++ C  D YILDAAEE+G+DLPYSCRAGACSSC+GKVVSGKLDQSDQSFLDD+QVAE
Sbjct: 61  GEKSITCPDDAYILDAAEENGIDLPYSCRAGACSSCIGKVVSGKLDQSDQSFLDDDQVAE 120

Query: 121 GWVLTCVARPESDLVIETHKEDSFA 146
           GWVLTCVAR ESD+VIETHKED FA
Sbjct: 121 GWVLTCVARAESDVVIETHKEDVFA 145

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BLAST of CsGy3G018990 vs. NCBI nr
Match: XP_022941964.1 (ferredoxin-like [Cucurbita moschata] >XP_022983176.1 ferredoxin-like [Cucurbita maxima] >XP_023547581.1 ferredoxin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.2 bits (565), Expect = 1.3e-54
Identity = 106/149 (71.14%), Postives = 126/149 (84.56%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFIRR-NPTGGVSFKPFPNMGESLYGLK---HRGGRLAMKAYKVKL 60
           M STTA+T+P P TSF+RR  P  GVS +PFPN+G+SL+GLK    RGG + + AYKVKL
Sbjct: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60

Query: 61  ITPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDE 120
           ITP+GEK +EC  D YILDAAEESG+DLPYSCRAGACSSC+GK+ SGK+DQSD SFLDD+
Sbjct: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120

Query: 121 QVAEGWVLTCVARPESDLVIETHKEDSFA 146
           Q+ +GWVLTCVARPESD+VIETHKE+ FA
Sbjct: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 149

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BLAST of CsGy3G018990 vs. NCBI nr
Match: XP_022136604.1 (ferredoxin-like [Momordica charantia])

HSP 1 Score: 214.2 bits (544), Expect = 3.4e-52
Identity = 104/147 (70.75%), Postives = 121/147 (82.31%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLK--HRGGRLAMKAYKVKLIT 60
           M STTA++ P PATSF+R  P  G+  +PFPNMG+ ++GLK   RGGR+   AYKV LIT
Sbjct: 1   MGSTTALSGPIPATSFLRGQPAAGL--RPFPNMGQGVFGLKGGSRGGRVRAMAYKVTLIT 60

Query: 61  PDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQV 120
           P GEK+V+C  D YILDAAEE GLDLPYSCRAGACSSCVGKVVSGK+DQSD SFLDD+Q+
Sbjct: 61  PSGEKSVKCPPDSYILDAAEEDGLDLPYSCRAGACSSCVGKVVSGKVDQSDNSFLDDDQM 120

Query: 121 AEGWVLTCVARPESDLVIETHKEDSFA 146
           AEGWVLTCVA P+SD+VIETHKE  F+
Sbjct: 121 AEGWVLTCVAYPQSDVVIETHKEGEFS 145

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BLAST of CsGy3G018990 vs. NCBI nr
Match: PON46312.1 (Ferredoxin [2Fe-2S] [Parasponia andersonii])

HSP 1 Score: 189.9 bits (481), Expect = 7.0e-45
Identity = 93/148 (62.84%), Postives = 119/148 (80.41%), Query Frame = 0


Query: 2   SSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLK---HRGGRL-AMKAYKVKLI 61
           ++  A++S   +TSF+RR PT   S +  PN+G++L+GLK   +RGGR+ AM AYKVKLI
Sbjct: 3   ATAAALSSTMVSTSFVRRQPT-TTSLRALPNVGQALFGLKATPNRGGRVTAMAAYKVKLI 62

Query: 62  TPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQ 121
           TP+GE   EC  D+Y+LD AEE+G+DLPYSCRAG+CSSCVGKVV G++DQSD SFLDD+Q
Sbjct: 63  TPEGEVEFECPDDVYVLDQAEENGIDLPYSCRAGSCSSCVGKVVKGEVDQSDNSFLDDDQ 122

Query: 122 VAEGWVLTCVARPESDLVIETHKEDSFA 146
           +A GWVLTCVA P+SD+VIETHKE+  A
Sbjct: 123 LAGGWVLTCVAYPQSDVVIETHKEEELA 149

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BLAST of CsGy3G018990 vs. TAIR10
Match: AT1G10960.1 (ferredoxin 1)

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-46
Identity = 94/146 (64.38%), Postives = 118/146 (80.82%), Query Frame = 0


Query: 3   STTAITSPFPATSFIRRNPTG-GVSFKPFPNMGESLYGLKH---RGGRL-AMKAYKVKLI 62
           ++TA++S   +TSF+RR  T   +   PF N  +SL+GLK    RGGR+ AM  YKVK I
Sbjct: 2   ASTALSSAIVSTSFLRRQQTPISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVKFI 61

Query: 63  TPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQ 122
           TP+GE+ VEC+ D+Y+LDAAEE+GLDLPYSCRAG+CSSC GKVVSG +DQSDQSFLDDEQ
Sbjct: 62  TPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQ 121

Query: 123 VAEGWVLTCVARPESDLVIETHKEDS 144
           ++EG+VLTCVA P SD+VIETHKE++
Sbjct: 122 MSEGYVLTCVAYPTSDVVIETHKEEA 146

[Close]

BLAST of CsGy3G018990 vs. TAIR10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 180.6 bits (457), Expect = 7.7e-46
Identity = 92/145 (63.45%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 3   STTAITSPFPATSFIRRNPTGGVSFKPFPNMG-ESLYGLKH---RGGRL-AMKAYKVKLI 62
           ++TA++S    TSFIRR+P   +S +  P+   +SL+GLK    RGGR+ AM  YKVK I
Sbjct: 2   ASTALSSAIVGTSFIRRSP-APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFI 61

Query: 63  TPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQ 122
           TP+GE  VECD D+Y+LDAAEE+G+DLPYSCRAG+CSSC GKVVSG +DQSDQSFLDDEQ
Sbjct: 62  TPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQ 121

Query: 123 VAEGWVLTCVARPESDLVIETHKED 143
           + EG+VLTC A P SD+ IETHKE+
Sbjct: 122 IGEGFVLTCAAYPTSDVTIETHKEE 145

[Close]

BLAST of CsGy3G018990 vs. TAIR10
Match: AT2G27510.1 (ferredoxin 3)

HSP 1 Score: 132.9 bits (333), Expect = 1.8e-31
Identity = 66/108 (61.11%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 38  YGLK---HRGGRLAMKAYKVKLITPDG-EKTVECDADLYILDAAEESGLDLPYSCRAGAC 97
           +GLK   + GG      YKVKL+ PDG E   E   D YILDAAEE+G+DLPYSCRAGAC
Sbjct: 44  FGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGAC 103

Query: 98  SSCVGKVVSGKLDQSDQSFLDDEQVAEGWVLTCVARPESDLVIETHKE 142
           S+C G++VSG +DQSD SFL+D  + +G+VLTCVA P+SD VI THKE
Sbjct: 104 STCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKE 151

[Close]

BLAST of CsGy3G018990 vs. TAIR10
Match: AT5G10000.1 (ferredoxin 4)

HSP 1 Score: 112.5 bits (280), Expect = 2.6e-25
Identity = 52/99 (52.53%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 44  GGRLAMKAYKVKLITPDG-EKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVS 103
           G   A ++ KVKLI+P+G E+ +E + D  IL++AE +GL+LPYSCR+G C +C GK+VS
Sbjct: 46  GKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVS 105

Query: 104 GKLDQSDQSFLDDEQVAEGWVLTCVARPESDLVIETHKE 142
           GK+DQS  SFL++EQ+ +G++LTC+A P  D V+ THK+
Sbjct: 106 GKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQ 144

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BLAST of CsGy3G018990 vs. TAIR10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 4.5e-14
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 45  GRLAMKAYKVKLITPDGEKT-VECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSG 104
           GR+  +AYKV ++  DG+ T +E + D  IL  A +SGLD+PY C  G C +C  K+V+G
Sbjct: 46  GRIIARAYKV-VVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTG 105

Query: 105 KLDQSDQSFLDDEQVAEGWVLTCVARPESDLVIETHKED 143
            +DQS    L D+ V  G+ L C + P SD  I+   E+
Sbjct: 106 TVDQSG-GMLSDDVVERGYTLLCASYPTSDCHIKMIPEE 142

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BLAST of CsGy3G018990 vs. Swiss-Prot
Match: sp|O04090|FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.6e-45
Identity = 94/146 (64.38%), Postives = 118/146 (80.82%), Query Frame = 0


Query: 3   STTAITSPFPATSFIRRNPTG-GVSFKPFPNMGESLYGLKH---RGGRL-AMKAYKVKLI 62
           ++TA++S   +TSF+RR  T   +   PF N  +SL+GLK    RGGR+ AM  YKVK I
Sbjct: 2   ASTALSSAIVSTSFLRRQQTPISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVKFI 61

Query: 63  TPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQ 122
           TP+GE+ VEC+ D+Y+LDAAEE+GLDLPYSCRAG+CSSC GKVVSG +DQSDQSFLDDEQ
Sbjct: 62  TPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQ 121

Query: 123 VAEGWVLTCVARPESDLVIETHKEDS 144
           ++EG+VLTCVA P SD+VIETHKE++
Sbjct: 122 MSEGYVLTCVAYPTSDVVIETHKEEA 146

[Close]

BLAST of CsGy3G018990 vs. Swiss-Prot
Match: sp|P16972|FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-44
Identity = 92/145 (63.45%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 3   STTAITSPFPATSFIRRNPTGGVSFKPFPNMG-ESLYGLKH---RGGRL-AMKAYKVKLI 62
           ++TA++S    TSFIRR+P   +S +  P+   +SL+GLK    RGGR+ AM  YKVK I
Sbjct: 2   ASTALSSAIVGTSFIRRSP-APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFI 61

Query: 63  TPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQ 122
           TP+GE  VECD D+Y+LDAAEE+G+DLPYSCRAG+CSSC GKVVSG +DQSDQSFLDDEQ
Sbjct: 62  TPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQ 121

Query: 123 VAEGWVLTCVARPESDLVIETHKED 143
           + EG+VLTC A P SD+ IETHKE+
Sbjct: 122 IGEGFVLTCAAYPTSDVTIETHKEE 145

[Close]

BLAST of CsGy3G018990 vs. Swiss-Prot
Match: sp|Q9ZTS2|FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.0e-40
Identity = 80/138 (57.97%), Postives = 105/138 (76.09%), Query Frame = 0


Query: 6   AITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKH-RGGRL-AMKAYKVKLITPDGEK 65
           ++++   +TSF+ R P    S KP PN+GE+L+GLK   GG++  M +YKVKLITPDG  
Sbjct: 3   SVSATMISTSFMPRKP-AVTSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGPI 62

Query: 66  TVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAEGWV 125
             +C  ++YILD AEE+G DLPYSCRAG+CSSC GK+  G +DQ+D +FLDD+Q+ EGWV
Sbjct: 63  EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWV 122

Query: 126 LTCVARPESDLVIETHKE 142
           LTCVA P+SD+ IETHKE
Sbjct: 123 LTCVAYPQSDVTIETHKE 139

[Close]

BLAST of CsGy3G018990 vs. Swiss-Prot
Match: sp|O04683|FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.5e-38
Identity = 78/144 (54.17%), Postives = 104/144 (72.22%), Query Frame = 0


Query: 2   SSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLK---HRGGRLAMKAYKVKLIT 61
           ++T A++    +T+F  + P    +     N+G +L+GLK    RG   AM AYKV L+T
Sbjct: 3   ATTAALSGATMSTAFAPKTPPMTAALP--TNVGRALFGLKSSASRGRVTAMAAYKVTLVT 62

Query: 62  PDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQV 121
           P+G++ +EC  D+YILDAAEE+G+DLPYSCRAG+CSSC GKV SG ++Q D SFLDD+Q+
Sbjct: 63  PEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQI 122

Query: 122 AEGWVLTCVARPESDLVIETHKED 143
            EGWVLTCVA P  D+ IETHKE+
Sbjct: 123 KEGWVLTCVAYPTGDVTIETHKEE 144

[Close]

BLAST of CsGy3G018990 vs. Swiss-Prot
Match: sp|P00221|FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETF PE=1 SV=2)

HSP 1 Score: 159.5 bits (402), Expect = 3.3e-38
Identity = 79/142 (55.63%), Postives = 98/142 (69.01%), Query Frame = 0


Query: 3   STTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLK--HRGGRLAMKAYKVKLITPD 62
           + T  T    AT+F+ +     +      N G SL+GLK   RGGR+ M AYKV L+TP 
Sbjct: 2   AATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTPT 61

Query: 63  GEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAE 122
           G    +C  D+YILDAAEE G+DLPYSCRAG+CSSC GK+ +G L+Q DQSFLDD+Q+ E
Sbjct: 62  GNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDE 121

Query: 123 GWVLTCVARPESDLVIETHKED 143
           GWVLTC A P SD+ IETHKE+
Sbjct: 122 GWVLTCAAYPVSDVTIETHKEE 143

[Close]

BLAST of CsGy3G018990 vs. TrEMBL
Match: tr|A0A0A0L764|A0A0A0L764_CUCSA (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G222800 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 3.5e-77
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKHRGGRLAMKAYKVKLITPD 60
           MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKHRGGRLAMKAYKVKLITPD
Sbjct: 1   MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKHRGGRLAMKAYKVKLITPD 60

Query: 61  GEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAE 120
           GEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAE
Sbjct: 61  GEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAE 120

Query: 121 GWVLTCVARPESDLVIETHKEDSFA 146
           GWVLTCVARPESDLVIETHKEDSFA
Sbjct: 121 GWVLTCVARPESDLVIETHKEDSFA 145

[Close]

BLAST of CsGy3G018990 vs. TrEMBL
Match: tr|A0A1S3C1X0|A0A1S3C1X0_CUCME (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496100 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 3.1e-65
Identity = 121/145 (83.45%), Postives = 132/145 (91.03%), Query Frame = 0


Query: 1   MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKHRGGRLAMKAYKVKLITPD 60
           M STTA TSPFPATSF+RRNPTGGVS KPFPNMGESL+GLKHRGGR+   AY VKLITP+
Sbjct: 1   MGSTTAFTSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKHRGGRVTAMAYNVKLITPE 60

Query: 61  GEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAE 120
           GEK++ C  D YILDAAEE+G+DLPYSCRAGACSSC+GKVVSGKLDQSDQSFLDD+QVAE
Sbjct: 61  GEKSITCPDDAYILDAAEENGIDLPYSCRAGACSSCIGKVVSGKLDQSDQSFLDDDQVAE 120

Query: 121 GWVLTCVARPESDLVIETHKEDSFA 146
           GWVLTCVAR ESD+VIETHKED FA
Sbjct: 121 GWVLTCVARAESDVVIETHKEDVFA 145

[Close]

BLAST of CsGy3G018990 vs. TrEMBL
Match: tr|A0A2P5BC06|A0A2P5BC06_PARAD (Ferredoxin OS=Parasponia andersonii OX=3476 GN=PanWU01x14_252590 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.6e-45
Identity = 93/148 (62.84%), Postives = 119/148 (80.41%), Query Frame = 0


Query: 2   SSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLK---HRGGRL-AMKAYKVKLI 61
           ++  A++S   +TSF+RR PT   S +  PN+G++L+GLK   +RGGR+ AM AYKVKLI
Sbjct: 3   ATAAALSSTMVSTSFVRRQPT-TTSLRALPNVGQALFGLKATPNRGGRVTAMAAYKVKLI 62

Query: 62  TPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQ 121
           TP+GE   EC  D+Y+LD AEE+G+DLPYSCRAG+CSSCVGKVV G++DQSD SFLDD+Q
Sbjct: 63  TPEGEVEFECPDDVYVLDQAEENGIDLPYSCRAGSCSSCVGKVVKGEVDQSDNSFLDDDQ 122

Query: 122 VAEGWVLTCVARPESDLVIETHKEDSFA 146
           +A GWVLTCVA P+SD+VIETHKE+  A
Sbjct: 123 LAGGWVLTCVAYPQSDVVIETHKEEELA 149

[Close]

BLAST of CsGy3G018990 vs. TrEMBL
Match: tr|A0A067L2U1|A0A067L2U1_JATCU (Ferredoxin OS=Jatropha curcas OX=180498 GN=JCGZ_04972 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.0e-44
Identity = 92/142 (64.79%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 3   STTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLK-HRGGRL-AMKAYKVKLITPD 62
           ++TA++S   +TSF RR P    S +  PN+G++L+GLK  RGG+  AM +YKVKL+TP+
Sbjct: 2   ASTALSSAMVSTSFTRRQPV--TSLRALPNVGQALFGLKSSRGGKFKAMASYKVKLLTPE 61

Query: 63  GEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAE 122
           GEK +EC  D+YILDAAEE+G+DLPYSCRAG+CSSC GKVV G++DQSD SFLDDEQ+ E
Sbjct: 62  GEKVIECPDDVYILDAAEEAGVDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQMEE 121

Query: 123 GWVLTCVARPESDLVIETHKED 143
           GWVLTCVA P SD+VIETHKE+
Sbjct: 122 GWVLTCVAYPTSDVVIETHKEE 141

[Close]

BLAST of CsGy3G018990 vs. TrEMBL
Match: tr|A0A2P5BHJ1|A0A2P5BHJ1_9ROSA (Ferredoxin OS=Trema orientalis OX=63057 GN=TorRG33x02_320950 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.3e-44
Identity = 93/148 (62.84%), Postives = 117/148 (79.05%), Query Frame = 0


Query: 2   SSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLK---HRGGRL-AMKAYKVKLI 61
           ++  A++S   +TSF+RR PT   S +  PN+G++L+GLK    RGGR+ AM AYKVKL+
Sbjct: 3   ATAAALSSAMVSTSFVRRQPT-TTSLRALPNVGQALFGLKATPSRGGRVTAMAAYKVKLL 62

Query: 62  TPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQ 121
           TP+GE   EC  D+Y+LD AEE G+DLPYSCRAG+CSSCVGKVV G++DQSD SFLDD+Q
Sbjct: 63  TPEGEVEFECPDDVYVLDQAEEVGIDLPYSCRAGSCSSCVGKVVKGEVDQSDNSFLDDDQ 122

Query: 122 VAEGWVLTCVARPESDLVIETHKEDSFA 146
           VA GWVLTCVA P+SD+VIETHKE+  A
Sbjct: 123 VAGGWVLTCVAYPQSDVVIETHKEEELA 149

The following BLAST results are available for this feature:

BLAST of CsGy3G018990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146259.1	5.3e-77	100.00	PREDICTED: ferredoxin, leaf L-A-like [Cucumis sativus] >KGN57598.1 hypothetical ...	[more]
XP_008456052.1	4.6e-65	83.45	PREDICTED: ferredoxin-like [Cucumis melo]	[more]
XP_022941964.1	1.3e-54	71.14	ferredoxin-like [Cucurbita moschata] >XP_022983176.1 ferredoxin-like [Cucurbita ...	[more]
XP_022136604.1	3.4e-52	70.75	ferredoxin-like [Momordica charantia]	[more]
PON46312.1	7.0e-45	62.84	Ferredoxin [2Fe-2S] [Parasponia andersonii]	[more]

BLAST of CsGy3G018990 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10960.1	2.0e-46	64.38	ferredoxin 1	[more]
AT1G60950.1	7.7e-46	63.45	2Fe-2S ferredoxin-like superfamily protein	[more]
AT2G27510.1	1.8e-31	61.11	ferredoxin 3	[more]
AT5G10000.1	2.6e-25	52.53	ferredoxin 4	[more]
AT4G14890.1	4.5e-14	41.41	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of CsGy3G018990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04090\|FER1_ARATH	3.6e-45	64.38	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1	[more]
sp\|P16972\|FER2_ARATH	1.4e-44	63.45	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1	[more]
sp\|Q9ZTS2\|FER_CAPAN	6.0e-40	57.97	Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1	[more]
sp\|O04683\|FER1_MESCR	2.5e-38	54.17	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
sp\|P00221\|FER1_SPIOL	3.3e-38	55.63	Ferredoxin-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETF PE=1 SV=2	[more]

BLAST of CsGy3G018990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L764\|A0A0A0L764_CUCSA	3.5e-77	100.00	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G222800 PE=3 SV=1	[more]
tr\|A0A1S3C1X0\|A0A1S3C1X0_CUCME	3.1e-65	83.45	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496100 PE=3 SV=1	[more]
tr\|A0A2P5BC06\|A0A2P5BC06_PARAD	4.6e-45	62.84	Ferredoxin OS=Parasponia andersonii OX=3476 GN=PanWU01x14_252590 PE=3 SV=1	[more]
tr\|A0A067L2U1\|A0A067L2U1_JATCU	1.0e-44	64.79	Ferredoxin OS=Jatropha curcas OX=180498 GN=JCGZ_04972 PE=3 SV=1	[more]
tr\|A0A2P5BHJ1\|A0A2P5BHJ1_9ROSA	1.3e-44	62.84	Ferredoxin OS=Trema orientalis OX=63057 GN=TorRG33x02_320950 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0051536	iron-sulfur cluster binding
GO:0009055	electron carrier activity

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

Vocabulary: **INTERPRO**
Term	Definition
IPR036010	2Fe-2S_ferredoxin-like_sf
IPR006058	2Fe2S_fd_BS
IPR010241	Fd_pln
IPR012675	Beta-grasp_dom_sf
IPR001041	2Fe-2S_ferredoxin-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G018990.1	CsGy3G018990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 58..130 e-value: 8.1E-20 score: 70.5
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 52..142 score: 13.488
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 54..137 e-value: 2.10933E-33 score: 114.414
IPR012675	Beta-grasp domain superfamily	GENE3D	G3DSA:3.10.20.30		coord: 49..153 e-value: 7.2E-35 score: 120.8
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 51..143 e-value: 1.0E-46 score: 154.6
None	No IPR available	PANTHER	PTHR43112	FAMILY NOT NAMED	coord: 39..143
None	No IPR available	PANTHER	PTHR43112:SF4	FERREDOXIN-3, CHLOROPLASTIC-RELATED	coord: 39..143
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 88..96
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	SSF54292	2Fe-2S ferredoxin-like	coord: 48..145

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G018990	Cla013019	Watermelon (97103) v1	cgybwmB229
CsGy3G018990	Csa3G222790	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G018990	MELO3C019438	Melon (DHL92) v3.5.1	cgybmeB210
CsGy3G018990	ClCG05G009510	Watermelon (Charleston Gray)	cgybwcgB214
CsGy3G018990	CSPI03G19080	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G018990	CmaCh04G005340	Cucurbita maxima (Rimu)	cgybcmaB410
CsGy3G018990	CmoCh04G005700	Cucurbita moschata (Rifu)	cgybcmoB386
CsGy3G018990	CmoCh16G004200	Cucurbita moschata (Rifu)	cgybcmoB301
CsGy3G018990	Lsi05G001640	Bottle gourd (USVL1VR-Ls)	cgyblsiB198
CsGy3G018990	Cp4.1LG01g01870	Cucurbita pepo (Zucchini)	cgybcpeB362
CsGy3G018990	MELO3C019438.2	Melon (DHL92) v3.6.1	cgybmedB215
CsGy3G018990	CsaV3_3G019210	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G018990	Cla97C05G091890	Watermelon (97103) v2	cgybwmbB206
CsGy3G018990	Bhi01G001192	Wax gourd	cgybwgoB271
CsGy3G018990	Carg11316	Silver-seed gourd	carcgybB0650
CsGy3G018990	Carg13204	Silver-seed gourd	carcgybB0043

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G018990	Cucurbita maxima (Rimu)	cgybcmaB332
CsGy3G018990	Cucurbita pepo (Zucchini)	cgybcpeB317