CmaCh04G005340 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G005340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Benzoate 1,2-dioxygenase electron transfer component
Location	Cma_Chr04 : 2719362 .. 2720677 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGCACCACCGCACTCACCGCCCCAATTCCGGTCACCTCCTTCCTCCGACGGCAGCAGCCGGTGACCGGGGTAAGCCTGAGGCCATTTCCCAACGTGGGTCAGTCTCTGTTTGGGCTGAAACTCGGCAGCAGTCGCGGTGGAAGCATGACAGTGATGGCATACAAGGTGAAGCTGATTACACCAGAGGGAGAGAAAGAGATTGAATGCAGCGGCGATGATTACATTCTTGATGCGGCGGAAGAAAGCGGCGTTGATCTGCCGTACTCTTGCAGAGCAGGGGCGTGTTCTTCGTGCATTGGGAAGCTGAAATCAGGGAAAGTGGATCAATCTGATAACAGCTTTCTTGATGATCAACAAATGGAAGATGGGTGGGTTCTGACTTGTGTTGCAAGGCCTGAATCTGATATTGTAATTGAGACCCACAAGGAGGAGGTCTTTGCTGATTCTGCCTAATTCTTTTGTTTACATCTTGTTGTTCATCAGTCATTACGGTGTGATGAGAGTAAGCAAAATGGATACTGTTTTTACCTTTGAACTTGATTTGATATTATCTCTCTGTTTAATGTTTGTATGTCTTTGTTTATCAATGGTTTAATCTGATTTTGTTGACTTGGGTTCTGTTCATCTGTTGTCTGAGCTCTTCATCTTCGTTTCTTTTTGGCATCTAAGATGTTGAAGCAAAGTTATTGGTGATGCAATCTCTTAGCTTAATATACTCAAAATATTGTTCTTGTTCATCAGTTCATGTAGGTTCATTTTCGCTACTTTTAGCTTAATAAAGTGGTTGAATGTTGGGTTTCTTGGTTGTGTTAGTACTCCTCCTAGCTATGGATTTCTCAACGAATTGAAATATACTAAAACTTTGCTCAATAATACCATTCTATCACGTAAATCTTGGTGAGTAGATTGATGTGCTATCTTTAAAATTTAACATGTTTAATATAAGTTTGATATGATGTTTTAGATCATAAAAGCGTCAAAATTATGTGTGTATATATATTTTATAAATGCTAATGATGAGTAGGGAGTTATCCATAAGAGATGAATCTCATGAAATTATGCCTTATCATTGGTCATTGAAAGATAAGGTTAGCCATAGCCAAAGCCACATGCTCTGATTTCACTCTCCAAATTAAAGCCACACAGCCATTATCTCACTTTCACCATACCCTCAGTCCATTCCAAGTAGCAAAATGGCCAGCACCACCATTGTAGTTTTCGGCCCCATCACCGACAATTCCTTCCTCAGGCGATCACTGAGGACGGTGTTGGGCGTGCATCTGTTCAGGCTGCAGAAGGGCAGCAAATGA

mRNA sequence

ATGGGCAGCACCACCGCACTCACCGCCCCAATTCCGGTCACCTCCTTCCTCCGACGGCAGCAGCCGGTGACCGGGGTAAGCCTGAGGCCATTTCCCAACGTGGGTCAGTCTCTGTTTGGGCTGAAACTCGGCAGCAGTCGCGGTGGAAGCATGACAGTGATGGCATACAAGGTGAAGCTGATTACACCAGAGGGAGAGAAAGAGATTGAATGCAGCGGCGATGATTACATTCTTGATGCGGCGGAAGAAAGCGGCGTTGATCTGCCGTACTCTTGCAGAGCAGGGGCGTGTTCTTCGTGCATTGGGAAGCTGAAATCAGGGAAAGTGGATCAATCTGATAACAGCTTTCTTGATGATCAACAAATGGAAGATGGGTGGGTTCTGACTTGTGTTGCAAGGCCTGAATCTGATATTGTAATTGAGACCCACAAGGAGGAGTCCATTCCAAGTAGCAAAATGGCCAGCACCACCATTGTAGTTTTCGGCCCCATCACCGACAATTCCTTCCTCAGGCGATCACTGAGGACGGTGTTGGGCGTGCATCTGTTCAGGCTGCAGAAGGGCAGCAAATGA

Coding sequence (CDS)

ATGGGCAGCACCACCGCACTCACCGCCCCAATTCCGGTCACCTCCTTCCTCCGACGGCAGCAGCCGGTGACCGGGGTAAGCCTGAGGCCATTTCCCAACGTGGGTCAGTCTCTGTTTGGGCTGAAACTCGGCAGCAGTCGCGGTGGAAGCATGACAGTGATGGCATACAAGGTGAAGCTGATTACACCAGAGGGAGAGAAAGAGATTGAATGCAGCGGCGATGATTACATTCTTGATGCGGCGGAAGAAAGCGGCGTTGATCTGCCGTACTCTTGCAGAGCAGGGGCGTGTTCTTCGTGCATTGGGAAGCTGAAATCAGGGAAAGTGGATCAATCTGATAACAGCTTTCTTGATGATCAACAAATGGAAGATGGGTGGGTTCTGACTTGTGTTGCAAGGCCTGAATCTGATATTGTAATTGAGACCCACAAGGAGGAGTCCATTCCAAGTAGCAAAATGGCCAGCACCACCATTGTAGTTTTCGGCCCCATCACCGACAATTCCTTCCTCAGGCGATCACTGAGGACGGTGTTGGGCGTGCATCTGTTCAGGCTGCAGAAGGGCAGCAAATGA

Protein sequence

MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQMEDGWVLTCVARPESDIVIETHKEESIPSSKMASTTIVVFGPITDNSFLRRSLRTVLGVHLFRLQKGSK

Homology

[Close]

BLAST of CmaCh04G005340 vs. Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-48
Identity = 101/149 (67.79%), Postives = 122/149 (81.88%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLR--PFPNVGQSLFGLKLGSSRGGSMTVMA-YKVK 62
           ++TAL++ I  TSFLRRQQ  T +SLR  PF N  QSLFGLK  ++RGG +T MA YKVK
Sbjct: 2   ASTALSSAIVSTSFLRRQQ--TPISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVK 61

Query: 63  LITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDD 122
            ITPEGE+E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG +DQSD SFLDD
Sbjct: 62  FITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD 121

Query: 123 QQMEDGWVLTCVARPESDIVIETHKEESI 149
           +QM +G+VLTCVA P SD+VIETHKEE+I
Sbjct: 122 EQMSEGYVLTCVAYPTSDVVIETHKEEAI 147

[Close]

BLAST of CmaCh04G005340 vs. Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.8e-45
Identity = 94/148 (63.51%), Postives = 115/148 (77.70%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVG-QSLFGLKLGSSRGGSMTVMA-YKVKL 62
           ++TAL++ I  TSF+RR      +SLR  P+   QSLFGLK G++RGG +T MA YKVK 
Sbjct: 2   ASTALSSAIVGTSFIRRSP--APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 122
           ITPEGE E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG VDQSD SFLDD+
Sbjct: 62  ITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDE 121

Query: 123 QMEDGWVLTCVARPESDIVIETHKEESI 149
           Q+ +G+VLTC A P SD+ IETHKEE I
Sbjct: 122 QIGEGFVLTCAAYPTSDVTIETHKEEDI 147

[Close]

BLAST of CmaCh04G005340 vs. Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-42
Identity = 87/144 (60.42%), Postives = 111/144 (77.08%), Query Frame = 1


Query: 6   ALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLITPE 65
           +++A +  TSF+ R+  VT  SL+P PNVG++LFGLK  S+ GG +T MA YKVKLITP+
Sbjct: 3   SVSATMISTSFMPRKPAVT--SLKPIPNVGEALFGLK--SANGGKVTCMASYKVKLITPD 62

Query: 66  GEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQMED 125
           G  E +C  + YILD AEE+G DLPYSCRAG+CSSC GK+  G VDQ+D +FLDD Q+E+
Sbjct: 63  GPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEE 122

Query: 126 GWVLTCVARPESDIVIETHKEESI 149
           GWVLTCVA P+SD+ IETHKE  +
Sbjct: 123 GWVLTCVAYPQSDVTIETHKEAEL 142

[Close]

BLAST of CmaCh04G005340 vs. Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-41
Identity = 83/146 (56.85%), Postives = 106/146 (72.60%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLIT 62
           +T AL+     T+F  +  P+T        NVG++LFGLK  +SRG    + AYKV L+T
Sbjct: 4   TTAALSGATMSTAFAPKTPPMTAALPT---NVGRALFGLKSSASRGRVTAMAAYKVTLVT 63

Query: 63  PEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQM 122
           PEG++E+EC  D YILDAAEE+G+DLPYSCRAG+CSSC GK+ SG V+Q D SFLDD Q+
Sbjct: 64  PEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQI 123

Query: 123 EDGWVLTCVARPESDIVIETHKEESI 149
           ++GWVLTCVA P  D+ IETHKEE +
Sbjct: 124 KEGWVLTCVAYPTGDVTIETHKEEEL 146

[Close]

BLAST of CmaCh04G005340 vs. Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-40
Identity = 84/146 (57.53%), Postives = 104/146 (71.23%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLIT 62
           + T  T     T+F+ + Q    ++  P  N G+SLFGLK GS RGG MT+ AYKV L+T
Sbjct: 2   AATTTTMMGMATTFVPKPQAPPMMAALP-SNTGRSLFGLKTGS-RGGRMTMAAYKVTLVT 61

Query: 63  PEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQM 122
           P G  E +C  D YILDAAEE G+DLPYSCRAG+CSSC GKLK+G ++Q D SFLDD Q+
Sbjct: 62  PTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQI 121

Query: 123 EDGWVLTCVARPESDIVIETHKEESI 149
           ++GWVLTC A P SD+ IETHKEE +
Sbjct: 122 DEGWVLTCAAYPVSDVTIETHKEEEL 145

[Close]

BLAST of CmaCh04G005340 vs. TrEMBL
Match: A0A0A0L764_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G222800 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.6e-54
Identity = 105/147 (71.43%), Postives = 125/147 (85.03%), Query Frame = 1


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           M STTA+T+P P TSF+RR  P  GVS +PFPN+G+SL+GLK    RGG + + AYKVKL
Sbjct: 1   MSSTTAITSPFPATSFIRRN-PTGGVSFKPFPNMGESLYGLK---HRGGRLAMKAYKVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITP+GEK +EC  D YILDAAEESG+DLPYSCRAGACSSC+GK+ SGK+DQSD SFLDD+
Sbjct: 61  ITPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDE 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEES 148
           Q+ +GWVLTCVARPESD+VIETHKE+S
Sbjct: 121 QVAEGWVLTCVARPESDLVIETHKEDS 143

[Close]

BLAST of CmaCh04G005340 vs. TrEMBL
Match: A0A067L2U1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04972 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 8.1e-48
Identity = 105/147 (71.43%), Postives = 120/147 (81.63%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLI 62
           ++TAL++ +  TSF RRQ PVT  SLR  PNVGQ+LFGLK  SSRGG    MA YKVKL+
Sbjct: 2   ASTALSSAMVSTSFTRRQ-PVT--SLRALPNVGQALFGLK--SSRGGKFKAMASYKVKLL 61

Query: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122
           TPEGEK IEC  D YILDAAEE+GVDLPYSCRAG+CSSC GK+  G+VDQSD SFLDD+Q
Sbjct: 62  TPEGEKVIECPDDVYILDAAEEAGVDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQ 121

Query: 123 MEDGWVLTCVARPESDIVIETHKEESI 149
           ME+GWVLTCVA P SD+VIETHKEE +
Sbjct: 122 MEEGWVLTCVAYPTSDVVIETHKEEDL 143

[Close]

BLAST of CmaCh04G005340 vs. TrEMBL
Match: F8SPG7_CAMSI (Chloroplast ferredoxin I OS=Camellia sinensis PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.8e-47
Identity = 101/149 (67.79%), Postives = 117/149 (78.52%), Query Frame = 1


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVK 60
           M    +L++ +  TSFL+RQQPVT  SLR  PNVGQ+LFG+K G  RGG +T MA YKVK
Sbjct: 1   MAMAASLSSTMVSTSFLQRQQPVT--SLRSLPNVGQALFGVKGG--RGGRVTAMAMYKVK 60

Query: 61  LITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDD 120
           L+TPEG +E EC  D YILD AEE G+DLPYSCRAG+CSSC GKL  GKVDQSD SFLDD
Sbjct: 61  LLTPEGPQEFECPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKLTGGKVDQSDGSFLDD 120

Query: 121 QQMEDGWVLTCVARPESDIVIETHKEESI 149
            QM+ GWVLTCVA P+SD+VIETHKEE +
Sbjct: 121 DQMDGGWVLTCVAYPQSDVVIETHKEEEL 145

[Close]

BLAST of CmaCh04G005340 vs. TrEMBL
Match: V4L7K7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009020mg PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.8e-47
Identity = 100/148 (67.57%), Postives = 119/148 (80.41%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVG-QSLFGLKLGSSRGGSMTVMA-YKVKL 62
           ++TAL++ I  TSFLRRQQ  T +SLR  P    QSLFGLK  ++RGG +T MA YKVK 
Sbjct: 2   ASTALSSAIVSTSFLRRQQ--TPISLRSLPAANTQSLFGLKSSTARGGRVTAMATYKVKF 61

Query: 63  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 122
           ITPEGE+E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG +DQSD SFLDD 
Sbjct: 62  ITPEGEQEVECEDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDD 121

Query: 123 QMEDGWVLTCVARPESDIVIETHKEESI 149
           QM DG+VLTCVA P SD+VIETHKEE+I
Sbjct: 122 QMNDGYVLTCVAYPTSDVVIETHKEEAI 147

[Close]

BLAST of CmaCh04G005340 vs. TrEMBL
Match: B9SXF4_RICCO (Ferredoxin-2, chloroplast, putative OS=Ricinus communis GN=RCOM_0321060 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.8e-46
Identity = 102/147 (69.39%), Postives = 118/147 (80.27%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLI 62
           ++TAL++ +  TSF RRQ PVT  SLR  PNVGQ+LFGL   SSRGG    MA +KVKLI
Sbjct: 2   ASTALSSAVVSTSFTRRQ-PVT--SLRALPNVGQALFGLN--SSRGGKFKAMAVHKVKLI 61

Query: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122
           TPEGEKE+EC  D YILD  EE+GVDLPYSCRAG+CSSC GK+ SG +DQSD SFLDD+Q
Sbjct: 62  TPEGEKELECPDDVYILDHFEEAGVDLPYSCRAGSCSSCAGKVVSGTLDQSDGSFLDDEQ 121

Query: 123 MEDGWVLTCVARPESDIVIETHKEESI 149
           ME GWVLTCVA P+SD+VIETHKEE +
Sbjct: 122 MEAGWVLTCVAYPQSDLVIETHKEEDL 143

[Close]

BLAST of CmaCh04G005340 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 193.7 bits (491), Expect = 1.0e-49
Identity = 101/149 (67.79%), Postives = 122/149 (81.88%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLR--PFPNVGQSLFGLKLGSSRGGSMTVMA-YKVK 62
           ++TAL++ I  TSFLRRQQ  T +SLR  PF N  QSLFGLK  ++RGG +T MA YKVK
Sbjct: 2   ASTALSSAIVSTSFLRRQQ--TPISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVK 61

Query: 63  LITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDD 122
            ITPEGE+E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG +DQSD SFLDD
Sbjct: 62  FITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD 121

Query: 123 QQMEDGWVLTCVARPESDIVIETHKEESI 149
           +QM +G+VLTCVA P SD+VIETHKEE+I
Sbjct: 122 EQMSEGYVLTCVAYPTSDVVIETHKEEAI 147

[Close]

BLAST of CmaCh04G005340 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-46
Identity = 94/148 (63.51%), Postives = 115/148 (77.70%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVG-QSLFGLKLGSSRGGSMTVMA-YKVKL 62
           ++TAL++ I  TSF+RR      +SLR  P+   QSLFGLK G++RGG +T MA YKVK 
Sbjct: 2   ASTALSSAIVGTSFIRRSP--APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 122
           ITPEGE E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG VDQSD SFLDD+
Sbjct: 62  ITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDE 121

Query: 123 QMEDGWVLTCVARPESDIVIETHKEESI 149
           Q+ +G+VLTC A P SD+ IETHKEE I
Sbjct: 122 QIGEGFVLTCAAYPTSDVTIETHKEEDI 147

[Close]

BLAST of CmaCh04G005340 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 142.9 bits (359), Expect = 2.0e-34
Identity = 69/111 (62.16%), Postives = 83/111 (74.77%), Query Frame = 1


Query: 39  FGLKLGSSRGGSMTVMAYKVKLITPEG-EKEIECSGDDYILDAAEESGVDLPYSCRAGAC 98
           FGLK  ++ GG+     YKVKL+ P+G E E E   D YILDAAEE+GVDLPYSCRAGAC
Sbjct: 44  FGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGAC 103

Query: 99  SSCIGKLKSGKVDQSDNSFLDDQQMEDGWVLTCVARPESDIVIETHKEESI 149
           S+C G++ SG VDQSD SFL+D  +E G+VLTCVA P+SD VI THKE  +
Sbjct: 104 STCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of CmaCh04G005340 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4)

HSP 1 Score: 114.8 bits (286), Expect = 5.9e-26
Identity = 59/110 (53.64%), Postives = 80/110 (72.73%), Query Frame = 1


Query: 43  LGSSRGGSMTVMAY---KVKLITPEGEK-EIECSGDDYILDAAEESGVDLPYSCRAGACS 102
           L SSRG    V A    KVKLI+PEGE+ EIE + D  IL++AE +G++LPYSCR+G C 
Sbjct: 38  LSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCG 97

Query: 103 SCIGKLKSGKVDQSDNSFLDDQQMEDGWVLTCVARPESDIVIETHKEESI 149
           +C GKL SGKVDQS  SFL+++Q++ G++LTC+A P  D V+ THK+  +
Sbjct: 98  TCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147

[Close]

BLAST of CmaCh04G005340 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 74.3 bits (181), Expect = 8.9e-14
Identity = 51/150 (34.00%), Postives = 72/150 (48.00%), Query Frame = 1


Query: 8   TAPIPV-TSFLRRQQPVTGVSLR-PFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLITPEG 67
           T P+P  TS +   +P    S   P  N   S    +      G +   AYKV +     
Sbjct: 3   TLPLPTQTSTISLPKPYLSNSFSFPLRNATLSTTTNRRNFLTTGRIIARAYKVVVEHDGK 62

Query: 68  EKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQMEDG 127
             E+E   D+ IL  A +SG+D+PY C  G C +C  KL +G VDQS    L D  +E G
Sbjct: 63  TTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-GGMLSDDVVERG 122

Query: 128 WVLTCVARPESDIVIETHKEESIPSSKMAS 156
           + L C + P SD  I+   EE + S ++A+
Sbjct: 123 YTLLCASYPTSDCHIKMIPEEELLSLQLAT 151

[Close]

BLAST of CmaCh04G005340 vs. NCBI nr
Match: gi|659112074|ref|XP_008456052.1| (PREDICTED: ferredoxin-like [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 1.7e-54
Identity = 109/146 (74.66%), Postives = 122/146 (83.56%), Query Frame = 1


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           MGSTTA T+P P TSFLRR  P  GVSL+PFPN+G+SLFGLK    RGG +T MAY VKL
Sbjct: 1   MGSTTAFTSPFPATSFLRRN-PTGGVSLKPFPNMGESLFGLK---HRGGRVTAMAYNVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITPEGEK I C  D YILDAAEE+G+DLPYSCRAGACSSCIGK+ SGK+DQSD SFLDD 
Sbjct: 61  ITPEGEKSITCPDDAYILDAAEENGIDLPYSCRAGACSSCIGKVVSGKLDQSDQSFLDDD 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEE 147
           Q+ +GWVLTCVAR ESD+VIETHKE+
Sbjct: 121 QVAEGWVLTCVARAESDVVIETHKED 142

[Close]

BLAST of CmaCh04G005340 vs. NCBI nr
Match: gi|449457045|ref|XP_004146259.1| (PREDICTED: ferredoxin, leaf L-A-like [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 3.7e-54
Identity = 105/147 (71.43%), Postives = 125/147 (85.03%), Query Frame = 1


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           M STTA+T+P P TSF+RR  P  GVS +PFPN+G+SL+GLK    RGG + + AYKVKL
Sbjct: 1   MSSTTAITSPFPATSFIRRN-PTGGVSFKPFPNMGESLYGLK---HRGGRLAMKAYKVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITP+GEK +EC  D YILDAAEESG+DLPYSCRAGACSSC+GK+ SGK+DQSD SFLDD+
Sbjct: 61  ITPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDE 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEES 148
           Q+ +GWVLTCVARPESD+VIETHKE+S
Sbjct: 121 QVAEGWVLTCVARPESDLVIETHKEDS 143

[Close]

BLAST of CmaCh04G005340 vs. NCBI nr
Match: gi|802591910|ref|XP_012071291.1| (PREDICTED: ferredoxin-A-like [Jatropha curcas])

HSP 1 Score: 198.4 bits (503), Expect = 1.2e-47
Identity = 105/147 (71.43%), Postives = 120/147 (81.63%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLI 62
           ++TAL++ +  TSF RRQ PVT  SLR  PNVGQ+LFGLK  SSRGG    MA YKVKL+
Sbjct: 2   ASTALSSAMVSTSFTRRQ-PVT--SLRALPNVGQALFGLK--SSRGGKFKAMASYKVKLL 61

Query: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122
           TPEGEK IEC  D YILDAAEE+GVDLPYSCRAG+CSSC GK+  G+VDQSD SFLDD+Q
Sbjct: 62  TPEGEKVIECPDDVYILDAAEEAGVDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQ 121

Query: 123 MEDGWVLTCVARPESDIVIETHKEESI 149
           ME+GWVLTCVA P SD+VIETHKEE +
Sbjct: 122 MEEGWVLTCVAYPTSDVVIETHKEEDL 143

[Close]

BLAST of CmaCh04G005340 vs. NCBI nr
Match: gi|338173755|gb|AEI83424.1| (chloroplast ferredoxin I [Camellia sinensis])

HSP 1 Score: 197.2 bits (500), Expect = 2.6e-47
Identity = 101/149 (67.79%), Postives = 117/149 (78.52%), Query Frame = 1


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVK 60
           M    +L++ +  TSFL+RQQPVT  SLR  PNVGQ+LFG+K G  RGG +T MA YKVK
Sbjct: 1   MAMAASLSSTMVSTSFLQRQQPVT--SLRSLPNVGQALFGVKGG--RGGRVTAMAMYKVK 60

Query: 61  LITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDD 120
           L+TPEG +E EC  D YILD AEE G+DLPYSCRAG+CSSC GKL  GKVDQSD SFLDD
Sbjct: 61  LLTPEGPQEFECPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKLTGGKVDQSDGSFLDD 120

Query: 121 QQMEDGWVLTCVARPESDIVIETHKEESI 149
            QM+ GWVLTCVA P+SD+VIETHKEE +
Sbjct: 121 DQMDGGWVLTCVAYPQSDVVIETHKEEEL 145

[Close]

BLAST of CmaCh04G005340 vs. NCBI nr
Match: gi|567153134|ref|XP_006417400.1| (hypothetical protein EUTSA_v10009020mg [Eutrema salsugineum])

HSP 1 Score: 195.3 bits (495), Expect = 9.8e-47
Identity = 100/148 (67.57%), Postives = 119/148 (80.41%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVG-QSLFGLKLGSSRGGSMTVMA-YKVKL 62
           ++TAL++ I  TSFLRRQQ  T +SLR  P    QSLFGLK  ++RGG +T MA YKVK 
Sbjct: 2   ASTALSSAIVSTSFLRRQQ--TPISLRSLPAANTQSLFGLKSSTARGGRVTAMATYKVKF 61

Query: 63  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 122
           ITPEGE+E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG +DQSD SFLDD 
Sbjct: 62  ITPEGEQEVECEDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDD 121

Query: 123 QMEDGWVLTCVARPESDIVIETHKEESI 149
           QM DG+VLTCVA P SD+VIETHKEE+I
Sbjct: 122 QMNDGYVLTCVAYPTSDVVIETHKEEAI 147

The following BLAST results are available for this feature:

BLAST of CmaCh04G005340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FER1_ARATH	1.8e-48	67.79	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1	[more]
FER2_ARATH	1.8e-45	63.51	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1	[more]
FER_CAPAN	1.9e-42	60.42	Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1	[more]
FER1_MESCR	1.2e-41	56.85	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1	[more]
FER1_SPIOL	1.0e-40	57.53	Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2	[more]

BLAST of CmaCh04G005340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L764_CUCSA	2.6e-54	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G222800 PE=4 SV=1	[more]
A0A067L2U1_JATCU	8.1e-48	71.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04972 PE=4 SV=1	[more]
F8SPG7_CAMSI	1.8e-47	67.79	Chloroplast ferredoxin I OS=Camellia sinensis PE=2 SV=1	[more]
V4L7K7_EUTSA	6.8e-47	67.57	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009020mg PE=4 SV=1	[more]
B9SXF4_RICCO	5.8e-46	69.39	Ferredoxin-2, chloroplast, putative OS=Ricinus communis GN=RCOM_0321060 PE=4 SV=...	[more]

BLAST of CmaCh04G005340 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10960.1	1.0e-49	67.79	ferredoxin 1	[more]
AT1G60950.1	1.0e-46	63.51	2Fe-2S ferredoxin-like superfamily protein	[more]
AT2G27510.1	2.0e-34	62.16	ferredoxin 3	[more]
AT5G10000.1	5.9e-26	53.64	ferredoxin 4	[more]
AT4G14890.1	8.9e-14	34.00	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of CmaCh04G005340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112074\|ref\|XP_008456052.1\|	1.7e-54	74.66	PREDICTED: ferredoxin-like [Cucumis melo]	[more]
gi\|449457045\|ref\|XP_004146259.1\|	3.7e-54	71.43	PREDICTED: ferredoxin, leaf L-A-like [Cucumis sativus]	[more]
gi\|802591910\|ref\|XP_012071291.1\|	1.2e-47	71.43	PREDICTED: ferredoxin-A-like [Jatropha curcas]	[more]
gi\|338173755\|gb\|AEI83424.1\|	2.6e-47	67.79	chloroplast ferredoxin I [Camellia sinensis]	[more]
gi\|567153134\|ref\|XP_006417400.1\|	9.8e-47	67.57	hypothetical protein EUTSA_v10009020mg [Eutrema salsugineum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001041	2Fe-2S_ferredoxin-type
IPR006058	2Fe2S_fd_BS
IPR010241	Fd_pln
IPR012675	Beta-grasp_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0051536	iron-sulfur cluster binding
GO:0051537	2 iron, 2 sulfur cluster binding

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0009639	response to red or far red light
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G005340.1	CmaCh04G005340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 62..134 score: 4.5
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 56..146 score: 13
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 53..148 score: 4.85
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 92..100 scor
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAMs	TIGR02008	TIGR02008	coord: 55..148 score: 3.9
IPR012675	Beta-grasp domain	GENE3D	G3DSA:3.10.20.30		coord: 54..151 score: 1.4
None	No IPR available	PANTHER	PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	coord: 16..180 score: 1.0
None	No IPR available	PANTHER	PTHR19370:SF120	FERREDOXIN-1, CHLOROPLASTIC-RELATED	coord: 16..180 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G005340	Cucsa.032940	Cucumber (Gy14) v1	cgycmaB0012
CmaCh04G005340	Cla013019	Watermelon (97103) v1	cmawmB703
CmaCh04G005340	Csa3G222790	Cucumber (Chinese Long) v2	cmacuB697
CmaCh04G005340	MELO3C019438	Melon (DHL92) v3.5.1	cmameB691
CmaCh04G005340	ClCG05G009510	Watermelon (Charleston Gray)	cmawcgB659
CmaCh04G005340	CSPI03G19080	Wild cucumber (PI 183967)	cmacpiB705
CmaCh04G005340	CmoCh04G005700	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G005340	CmoCh16G004200	Cucurbita moschata (Rifu)	cmacmoB701
CmaCh04G005340	Lsi05G001640	Bottle gourd (USVL1VR-Ls)	cmalsiB690
CmaCh04G005340	Cp4.1LG01g01870	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G005340	MELO3C019438.2	Melon (DHL92) v3.6.1	cmamedB777
CmaCh04G005340	CsaV3_3G019210	Cucumber (Chinese Long) v3	cmacucB0829
CmaCh04G005340	Cla97C05G091890	Watermelon (97103) v2	cmawmbB763
CmaCh04G005340	Bhi01G001192	Wax gourd	cmawgoB0852
CmaCh04G005340	CsGy3G018990	Cucumber (Gy14) v2	cgybcmaB410
CmaCh04G005340	Carg11316	Silver-seed gourd	carcmaB0925
CmaCh04G005340	Carg13204	Silver-seed gourd	carcmaB0055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G005340	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh04G005340	Cucurbita pepo (Zucchini)	cmacpeB715