Carg11316 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11316
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ferredoxin
Location	Cucurbita_argyrosperma_scaffold_025 : 229745 .. 230188 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGTGCACCAGTACTTTCCGGCGCTACAATCAACACCATCCTCCTCCAGAAGCAGCCAGCAACTAGCCTACGATCGGTGTCGAACTTCGGCCAGGGTCTTTTCGGGCTGAAGGGCAGCAGCCGTGGTGGGCGATTGGTTGCCATGGCAGAGTACAATGTGAAGCTGATCACACCAGAAGGAGAGAAGGAGTTCGTCTGCCCCGACGATGTATACGTCCTAGATCAGGCCGAGGAAATGGGAATCGACCTTCCATATTCATGCAGGGCAGGGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTGGGAGGGAAGGTGGAACAGTCGGACGGCAGCTTCCTTGACGACGACCAGATTGAAGAAGGTTGGGTTCTAACTTGTGTTGCATACCCTCAATCTGATATTGTCATTGAGACCCACAAGGAGGAAGATCTTGTGAGTTAG

mRNA sequence

ATGGCCAGTGCACCAGTACTTTCCGGCGCTACAATCAACACCATCCTCCTCCAGAAGCAGCCAGCAACTAGCCTACGATCGGTGTCGAACTTCGGCCAGGGTCTTTTCGGGCTGAAGGGCAGCAGCCGTGGTGGGCGATTGGTTGCCATGGCAGAGTACAATGTGAAGCTGATCACACCAGAAGGAGAGAAGGAGTTCGTCTGCCCCGACGATGTATACGTCCTAGATCAGGCCGAGGAAATGGGAATCGACCTTCCATATTCATGCAGGGCAGGGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTGGGAGGGAAGGTGGAACAGTCGGACGGCAGCTTCCTTGACGACGACCAGATTGAAGAAGGTTGGGTTCTAACTTGTGTTGCATACCCTCAATCTGATATTGTCATTGAGACCCACAAGGAGGAAGATCTTGTGAGTTAG

Coding sequence (CDS)

ATGGCCAGTGCACCAGTACTTTCCGGCGCTACAATCAACACCATCCTCCTCCAGAAGCAGCCAGCAACTAGCCTACGATCGGTGTCGAACTTCGGCCAGGGTCTTTTCGGGCTGAAGGGCAGCAGCCGTGGTGGGCGATTGGTTGCCATGGCAGAGTACAATGTGAAGCTGATCACACCAGAAGGAGAGAAGGAGTTCGTCTGCCCCGACGATGTATACGTCCTAGATCAGGCCGAGGAAATGGGAATCGACCTTCCATATTCATGCAGGGCAGGGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTGGGAGGGAAGGTGGAACAGTCGGACGGCAGCTTCCTTGACGACGACCAGATTGAAGAAGGTTGGGTTCTAACTTGTGTTGCATACCCTCAATCTGATATTGTCATTGAGACCCACAAGGAGGAAGATCTTGTGAGTTAG

Protein sequence

MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKGSSRGGRLVAMAEYNVKLITPEGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQIEEGWVLTCVAYPQSDIVIETHKEEDLVS

Homology

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BLAST of Carg11316 vs. NCBI nr
Match: XP_023552303.1 (ferredoxin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.4 bits (755), Expect = 1.0e-76
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKGSSRGGRLVAMAEYNVKLITP 60
           MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKGSSRGGRLVAMAEYNVKLITP
Sbjct: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKGSSRGGRLVAMAEYNVKLITP 60

Query: 61  EGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQIE 120
           EGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQIE
Sbjct: 61  EGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQIE 120

Query: 121 EGWVLTCVAYPQSDIVIETHKEEDLVS 148
           EGWVLTCVAYPQSDIVIETHKEEDLVS
Sbjct: 121 EGWVLTCVAYPQSDIVIETHKEEDLVS 147

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BLAST of Carg11316 vs. NCBI nr
Match: XP_022984878.1 (ferredoxin-A-like [Cucurbita maxima])

HSP 1 Score: 272.3 bits (695), Expect = 9.5e-70
Identity = 133/147 (90.48%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKGSSRGGRLVAMAEYNVKLITP 60
           MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLK S+ GGRLVA A Y+VKL+TP
Sbjct: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKDSTLGGRLVAKAVYSVKLLTP 60

Query: 61  EGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQIE 120
           EGEKEF+CPDDVY+LDQAEE+GIDLPYSCRAGSCSSCAGKVVGGKVEQSDGS+LDDDQIE
Sbjct: 61  EGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSYLDDDQIE 120

Query: 121 EGWVLTCVAYPQSDIVIETHKEEDLVS 148
           +GWVLTCVAYPQS+IVIETHKEE+LVS
Sbjct: 121 DGWVLTCVAYPQSNIVIETHKEEELVS 147

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BLAST of Carg11316 vs. NCBI nr
Match: XP_022922723.1 (ferredoxin-A-like [Cucurbita moschata])

HSP 1 Score: 269.2 bits (687), Expect = 8.0e-69
Identity = 130/147 (88.44%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKGSSRGGRLVAMAEYNVKLITP 60
           MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLK S+ GGRLVA A Y+VKL+TP
Sbjct: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKDSTLGGRLVAKAVYSVKLLTP 60

Query: 61  EGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQIE 120
           EGEKEF+CPDDVY+LDQAEE+GIDLPYSCRAGSCSSCAGKVVGG+VEQSDGS+LDDDQIE
Sbjct: 61  EGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGQVEQSDGSYLDDDQIE 120

Query: 121 EGWVLTCVAYPQSDIVIETHKEEDLVS 148
           +GWVLTCVAYPQS++VI+THKEE+LVS
Sbjct: 121 DGWVLTCVAYPQSNVVIQTHKEEELVS 147

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BLAST of Carg11316 vs. NCBI nr
Match: XP_022136608.1 (ferredoxin [Momordica charantia])

HSP 1 Score: 251.9 bits (642), Expect = 1.3e-63
Identity = 123/147 (83.67%), Postives = 131/147 (89.12%), Query Frame = 0


Query: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKGSSRGGRLVAMAEYNVKLITP 60
           MAS+  LSGA ++T  L+KQPA  LRSVSNFGQGLFGLKG SRGGR+ AMA Y VKLITP
Sbjct: 1   MASSTALSGAMMSTSFLRKQPAGGLRSVSNFGQGLFGLKGGSRGGRVTAMATYKVKLITP 60

Query: 61  EGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQIE 120
           EGEKEF CPDDVYVLDQAEE G DLPYSCRAGSCSSCAGKVV GKV+QSD SFLDDDQ+E
Sbjct: 61  EGEKEFSCPDDVYVLDQAEEQGFDLPYSCRAGSCSSCAGKVVSGKVDQSDNSFLDDDQLE 120

Query: 121 EGWVLTCVAYPQSDIVIETHKEEDLVS 148
           EGWVLTCVAYPQSDIVIETHKEE+LVS
Sbjct: 121 EGWVLTCVAYPQSDIVIETHKEEELVS 147

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BLAST of Carg11316 vs. NCBI nr
Match: XP_008456053.1 (PREDICTED: ferredoxin-like [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 3.4e-59
Identity = 117/148 (79.05%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLK-GSSRGGRLVAMAEYNVKLIT 60
           MAS+P LS AT+NT  L+KQPAT L SV NFGQ LFGLK GSSRGGR++AMAEYNVKLIT
Sbjct: 1   MASSPALSSATLNTSFLRKQPATRLGSVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PEGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQI 120
           P GE EF C DD Y+LD+AEEMG DLPYSCRAGSCSSCAGKVV GKV+QSDGS+LD+DQ+
Sbjct: 61  PAGETEFKCQDDDYILDRAEEMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLDEDQM 120

Query: 121 EEGWVLTCVAYPQSDIVIETHKEEDLVS 148
            EGWVLTCVAYPQSD+VIETHKEE L S
Sbjct: 121 NEGWVLTCVAYPQSDVVIETHKEEYLFS 148

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BLAST of Carg11316 vs. TAIR10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 188.7 bits (478), Expect = 2.5e-48
Identity = 98/147 (66.67%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 3   SAPVLSGATINTILLQKQPA-TSLRSVSNFG-QGLFGLK-GSSRGGRLVAMAEYNVKLIT 62
           ++  LS A + T  +++ PA  SLRS+ +   Q LFGLK G++RGGR+ AMA Y VK IT
Sbjct: 2   ASTALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFIT 61

Query: 63  PEGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQI 122
           PEGE E  C DDVYVLD AEE GIDLPYSCRAGSCSSCAGKVV G V+QSD SFLDD+QI
Sbjct: 62  PEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 121

Query: 123 EEGWVLTCVAYPQSDIVIETHKEEDLV 147
            EG+VLTC AYP SD+ IETHKEED+V
Sbjct: 122 GEGFVLTCAAYPTSDVTIETHKEEDIV 148

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BLAST of Carg11316 vs. TAIR10
Match: AT1G10960.1 (ferredoxin 1)

HSP 1 Score: 182.2 bits (461), Expect = 2.3e-46
Identity = 94/148 (63.51%), Postives = 112/148 (75.68%), Query Frame = 0


Query: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFG-QGLFGLKGS-SRGGRLVAMAEYNVKLI 60
           MAS  + S     + L ++Q   SLRS+     Q LFGLK S +RGGR+ AMA Y VK I
Sbjct: 1   MASTALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFI 60

Query: 61  TPEGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQ 120
           TPEGE+E  C +DVYVLD AEE G+DLPYSCRAGSCSSCAGKVV G ++QSD SFLDD+Q
Sbjct: 61  TPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQ 120

Query: 121 IEEGWVLTCVAYPQSDIVIETHKEEDLV 147
           + EG+VLTCVAYP SD+VIETHKEE ++
Sbjct: 121 MSEGYVLTCVAYPTSDVVIETHKEEAIM 148

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BLAST of Carg11316 vs. TAIR10
Match: AT2G27510.1 (ferredoxin 3)

HSP 1 Score: 151.8 bits (382), Expect = 3.4e-37
Identity = 77/141 (54.61%), Postives = 96/141 (68.09%), Query Frame = 0


Query: 6   VLSGATINTILLQKQPATSLRSVSNFGQGLFGLKGSSRGGRLVAMAEYNVKLITPEG-EK 65
           VL   T N ++  K    S+ S     +  FGLK S+  G     A Y VKL+ P+G E 
Sbjct: 15  VLRSQTTNKLITNKSYNLSVGSTKRVSRS-FGLKCSANSGGATMSAVYKVKLLGPDGQED 74

Query: 66  EFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQIEEGWV 125
           EF   DD Y+LD AEE G+DLPYSCRAG+CS+CAG++V G V+QSDGSFL+D  +E+G+V
Sbjct: 75  EFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYV 134

Query: 126 LTCVAYPQSDIVIETHKEEDL 146
           LTCVAYPQSD VI THKE +L
Sbjct: 135 LTCVAYPQSDCVIHTHKETEL 154

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BLAST of Carg11316 vs. TAIR10
Match: AT5G10000.1 (ferredoxin 4)

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-28
Identity = 62/132 (46.97%), Postives = 89/132 (67.42%), Query Frame = 0


Query: 18  QKQPATSLRSVSNFGQGLFGLKGSSRG--GRLVAMAEYNVKLITPEG-EKEFVCPDDVYV 77
           Q Q  T L + + FG        SSRG  G++ A     VKLI+PEG E+E    +D  +
Sbjct: 23  QAQLTTRLNNTTYFG------LSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCI 82

Query: 78  LDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQIEEGWVLTCVAYPQSD 137
           L+ AE  G++LPYSCR+G+C +C GK+V GKV+QS GSFL+++QI++G++LTC+A P  D
Sbjct: 83  LESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLED 142

Query: 138 IVIETHKEEDLV 147
            V+ THK+ DL+
Sbjct: 143 CVVYTHKQSDLI 148

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BLAST of Carg11316 vs. TAIR10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-14
Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 45  GRLVAMAEYNVKLITPEGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGG 104
           GR++A A Y V +       E     D  +L +A + G+D+PY C  G C +C  K+V G
Sbjct: 46  GRIIARA-YKVVVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTG 105

Query: 105 KVEQSDGSFLDDDQIEEGWVLTCVAYPQSDIVIETHKEEDLVS 148
            V+QS G  L DD +E G+ L C +YP SD  I+   EE+L+S
Sbjct: 106 TVDQS-GGMLSDDVVERGYTLLCASYPTSDCHIKMIPEEELLS 146

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BLAST of Carg11316 vs. Swiss-Prot
Match: sp|O04683|FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.3e-50
Identity = 94/146 (64.38%), Postives = 110/146 (75.34%), Query Frame = 0


Query: 2   ASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKGSSRGGRLVAMAEYNVKLITPE 61
           A+   LSGAT++T    K P  +    +N G+ LFGLK S+  GR+ AMA Y V L+TPE
Sbjct: 3   ATTAALSGATMSTAFAPKTPPMTAALPTNVGRALFGLKSSASRGRVTAMAAYKVTLVTPE 62

Query: 62  GEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQIEE 121
           G++E  CPDDVY+LD AEE GIDLPYSCRAGSCSSCAGKV  G V Q DGSFLDDDQI+E
Sbjct: 63  GKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKE 122

Query: 122 GWVLTCVAYPQSDIVIETHKEEDLVS 148
           GWVLTCVAYP  D+ IETHKEE+L +
Sbjct: 123 GWVLTCVAYPTGDVTIETHKEEELTA 148

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BLAST of Carg11316 vs. Swiss-Prot
Match: sp|Q9ZTS2|FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.7e-50
Identity = 94/141 (66.67%), Postives = 115/141 (81.56%), Query Frame = 0


Query: 7   LSGATINTILLQKQPA-TSLRSVSNFGQGLFGLKGSSRGGRLVAMAEYNVKLITPEGEKE 66
           +S   I+T  + ++PA TSL+ + N G+ LFGLK S+ GG++  MA Y VKLITP+G  E
Sbjct: 4   VSATMISTSFMPRKPAVTSLKPIPNVGEALFGLK-SANGGKVTCMASYKVKLITPDGPIE 63

Query: 67  FVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQIEEGWVL 126
           F CPD+VY+LDQAEE G DLPYSCRAGSCSSCAGK+ GG V+Q+DG+FLDDDQ+EEGWVL
Sbjct: 64  FDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVL 123

Query: 127 TCVAYPQSDIVIETHKEEDLV 147
           TCVAYPQSD+ IETHKE +LV
Sbjct: 124 TCVAYPQSDVTIETHKEAELV 143

[Close]

BLAST of Carg11316 vs. Swiss-Prot
Match: sp|P09911|FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum OX=3888 GN=PETF PE=1 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-49
Identity = 98/149 (65.77%), Postives = 115/149 (77.18%), Query Frame = 0


Query: 1   MASAPVLSGATINTILLQKQP-ATSLRSVSNFGQGLFGLKGS-SRGGRLVAMAEYNVKLI 60
           MA+ P L G  ++T  L+ QP   S+ +   F  G  GLK S  RG   VAMA Y VKL+
Sbjct: 1   MATTPALYGTAVSTSFLRTQPMPMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLV 60

Query: 61  TPEGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQ 120
           TP+G +EF CP DVY+LD AEE+GIDLPYSCRAGSCSSCAGKVVGG+V+QSDGSFLDD+Q
Sbjct: 61  TPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQ 120

Query: 121 IEEGWVLTCVAYPQSDIVIETHKEEDLVS 148
           IE G+VLTCVAYP SD+VIETHKEEDL +
Sbjct: 121 IEAGFVLTCVAYPTSDVVIETHKEEDLTA 149

[Close]

BLAST of Carg11316 vs. Swiss-Prot
Match: sp|Q43517|FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SEND33 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-48
Identity = 95/142 (66.90%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 7   LSGATINTILLQKQPA-TSLRSVSNFGQGLFGLKGSSRGGRLVAMAEYNVKLITPEGEKE 66
           +SG  I+T  L ++PA TSL+++SN G+ LFGLK S R GR+  MA Y VKLITPEG  E
Sbjct: 4   ISGTMISTSFLPRKPAVTSLKAISNVGEALFGLK-SGRNGRITCMASYKVKLITPEGPIE 63

Query: 67  FVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQIEEGWVL 126
           F CPDDVY+LDQAEE G DLPYSCRAGSCSSCAGKV  G V+QSDG+FLD+DQ   G+VL
Sbjct: 64  FECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVL 123

Query: 127 TCVAYPQSDIVIETHKEEDLVS 148
           TCVAYP+ D+ IETHKEE+L +
Sbjct: 124 TCVAYPKGDVTIETHKEEELTA 144

[Close]

BLAST of Carg11316 vs. Swiss-Prot
Match: sp|P16972|FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.5e-47
Identity = 98/147 (66.67%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 3   SAPVLSGATINTILLQKQPA-TSLRSVSNFG-QGLFGLK-GSSRGGRLVAMAEYNVKLIT 62
           ++  LS A + T  +++ PA  SLRS+ +   Q LFGLK G++RGGR+ AMA Y VK IT
Sbjct: 2   ASTALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFIT 61

Query: 63  PEGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQI 122
           PEGE E  C DDVYVLD AEE GIDLPYSCRAGSCSSCAGKVV G V+QSD SFLDD+QI
Sbjct: 62  PEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 121

Query: 123 EEGWVLTCVAYPQSDIVIETHKEEDLV 147
            EG+VLTC AYP SD+ IETHKEED+V
Sbjct: 122 GEGFVLTCAAYPTSDVTIETHKEEDIV 148

[Close]

BLAST of Carg11316 vs. TrEMBL
Match: tr|A0A1S3C2F7|A0A1S3C2F7_CUCME (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496101 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.2e-59
Identity = 117/148 (79.05%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLK-GSSRGGRLVAMAEYNVKLIT 60
           MAS+P LS AT+NT  L+KQPAT L SV NFGQ LFGLK GSSRGGR++AMAEYNVKLIT
Sbjct: 1   MASSPALSSATLNTSFLRKQPATRLGSVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PEGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQI 120
           P GE EF C DD Y+LD+AEEMG DLPYSCRAGSCSSCAGKVV GKV+QSDGS+LD+DQ+
Sbjct: 61  PAGETEFKCQDDDYILDRAEEMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLDEDQM 120

Query: 121 EEGWVLTCVAYPQSDIVIETHKEEDLVS 148
            EGWVLTCVAYPQSD+VIETHKEE L S
Sbjct: 121 NEGWVLTCVAYPQSDVVIETHKEEYLFS 148

[Close]

BLAST of Carg11316 vs. TrEMBL
Match: tr|A0A0A0LAD3|A0A0A0LAD3_CUCSA (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G222790 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.5e-58
Identity = 113/148 (76.35%), Postives = 127/148 (85.81%), Query Frame = 0


Query: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLK-GSSRGGRLVAMAEYNVKLIT 60
           M S+P LS  T+NT  LQKQP T +R V NFGQ LF LK GSSRGGR++AMAEYNVKLIT
Sbjct: 1   MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PEGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQI 120
           P GE EF CPDD Y+LD+AE+MG DLPYSCRAGSCSSCAGKVV GKV+QSDGS+L+DDQ+
Sbjct: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120

Query: 121 EEGWVLTCVAYPQSDIVIETHKEEDLVS 148
           +EGWVLTCVAYPQSD+VIETHKEE L S
Sbjct: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 148

[Close]

BLAST of Carg11316 vs. TrEMBL
Match: tr|F8SPG7|F8SPG7_CAMSI (Ferredoxin OS=Camellia sinensis OX=4442 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-54
Identity = 108/148 (72.97%), Postives = 125/148 (84.46%), Query Frame = 0


Query: 1   MASAPVLSGATINTILLQK-QPATSLRSVSNFGQGLFGLKGSSRGGRLVAMAEYNVKLIT 60
           MA A  LS   ++T  LQ+ QP TSLRS+ N GQ LFG+KG  RGGR+ AMA Y VKL+T
Sbjct: 1   MAMAASLSSTMVSTSFLQRQQPVTSLRSLPNVGQALFGVKG-GRGGRVTAMAMYKVKLLT 60

Query: 61  PEGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQI 120
           PEG +EF CPDDVY+LDQAEE+GIDLPYSCRAGSCSSCAGK+ GGKV+QSDGSFLDDDQ+
Sbjct: 61  PEGPQEFECPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKLTGGKVDQSDGSFLDDDQM 120

Query: 121 EEGWVLTCVAYPQSDIVIETHKEEDLVS 148
           + GWVLTCVAYPQSD+VIETHKEE+L +
Sbjct: 121 DGGWVLTCVAYPQSDVVIETHKEEELTA 147

[Close]

BLAST of Carg11316 vs. TrEMBL
Match: tr|A0A200QV92|A0A200QV92_9MAGN (Ferredoxin OS=Macleaya cordata OX=56857 GN=BVC80_8551g11 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.7e-54
Identity = 105/144 (72.92%), Postives = 121/144 (84.03%), Query Frame = 0


Query: 4   APVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKGSSRGGRLVAMAEYNVKLITPEGE 63
           A  LSG  ++T  +++QP TSLRS SN GQ LFGLK     GR+ AMA Y VKL+TPEG 
Sbjct: 2   AASLSGTMVSTSFIRRQPVTSLRSFSNVGQALFGLKAGR--GRITAMATYKVKLVTPEGT 61

Query: 64  KEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQIEEGW 123
           +EF CPDDVY+LD AEE+G+DLPYSCRAGSCSSCAGKVV GKV+QSDGSFLDDDQ+EEGW
Sbjct: 62  QEFECPDDVYILDHAEEIGVDLPYSCRAGSCSSCAGKVVEGKVDQSDGSFLDDDQMEEGW 121

Query: 124 VLTCVAYPQSDIVIETHKEEDLVS 148
           VLTCVAYPQSD+VIETHKEE+L +
Sbjct: 122 VLTCVAYPQSDVVIETHKEEELTA 143

[Close]

BLAST of Carg11316 vs. TrEMBL
Match: tr|A0A2P4MTV1|A0A2P4MTV1_QUESU (Ferredoxin OS=Quercus suber OX=58331 GN=CFP56_39999 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.7e-54
Identity = 104/145 (71.72%), Postives = 125/145 (86.21%), Query Frame = 0


Query: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLKGSSRGGRLVAMAEYNVKLITP 60
           MA+   LSG  ++T  +++QP TSLRS+   G+ LFG+KG  RGGR+ AMA + VKLITP
Sbjct: 1   MATTAALSGTMVSTSFIRRQPVTSLRSLPCVGRALFGVKG-GRGGRITAMAVHKVKLITP 60

Query: 61  EGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQIE 120
           +G +EF CPDDVY+LDQAEE+GID+PYSCRAGSCSSCAGKV GGKV+QSDGSFLDD+QIE
Sbjct: 61  DGPQEFECPDDVYILDQAEELGIDIPYSCRAGSCSSCAGKVQGGKVDQSDGSFLDDEQIE 120

Query: 121 EGWVLTCVAYPQSDIVIETHKEEDL 146
           +GWVLTCVAYPQSD+VIETHKEE+L
Sbjct: 121 QGWVLTCVAYPQSDVVIETHKEEEL 144

The following BLAST results are available for this feature:

BLAST of Carg11316 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023552303.1	1.0e-76	100.00	ferredoxin-like [Cucurbita pepo subsp. pepo]	[more]
XP_022984878.1	9.5e-70	90.48	ferredoxin-A-like [Cucurbita maxima]	[more]
XP_022922723.1	8.0e-69	88.44	ferredoxin-A-like [Cucurbita moschata]	[more]
XP_022136608.1	1.3e-63	83.67	ferredoxin [Momordica charantia]	[more]
XP_008456053.1	3.4e-59	79.05	PREDICTED: ferredoxin-like [Cucumis melo]	[more]

BLAST of Carg11316 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G60950.1	2.5e-48	66.67	2Fe-2S ferredoxin-like superfamily protein	[more]
AT1G10960.1	2.3e-46	63.51	ferredoxin 1	[more]
AT2G27510.1	3.4e-37	54.61	ferredoxin 3	[more]
AT5G10000.1	2.9e-28	46.97	ferredoxin 4	[more]
AT4G14890.1	1.4e-14	39.81	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of Carg11316 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04683\|FER1_MESCR	3.3e-50	64.38	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
sp\|Q9ZTS2\|FER_CAPAN	5.7e-50	66.67	Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1	[more]
sp\|P09911\|FER1_PEA	1.3e-49	65.77	Ferredoxin-1, chloroplastic OS=Pisum sativum OX=3888 GN=PETF PE=1 SV=2	[more]
sp\|Q43517\|FER1_SOLLC	1.1e-48	66.90	Ferredoxin-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SEND33 PE=2 SV=1	[more]
sp\|P16972\|FER2_ARATH	4.5e-47	66.67	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1	[more]

BLAST of Carg11316 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2F7\|A0A1S3C2F7_CUCME	2.2e-59	79.05	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496101 PE=3 SV=1	[more]
tr\|A0A0A0LAD3\|A0A0A0LAD3_CUCSA	2.5e-58	76.35	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G222790 PE=3 SV=1	[more]
tr\|F8SPG7\|F8SPG7_CAMSI	1.3e-54	72.97	Ferredoxin OS=Camellia sinensis OX=4442 PE=2 SV=1	[more]
tr\|A0A200QV92\|A0A200QV92_9MAGN	1.7e-54	72.92	Ferredoxin OS=Macleaya cordata OX=56857 GN=BVC80_8551g11 PE=3 SV=1	[more]
tr\|A0A2P4MTV1\|A0A2P4MTV1_QUESU	1.7e-54	71.72	Ferredoxin OS=Quercus suber OX=58331 GN=CFP56_39999 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051536	iron-sulfur cluster binding
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0009055	electron carrier activity

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

Vocabulary: **INTERPRO**
Term	Definition
IPR036010	2Fe-2S_ferredoxin-like_sf
IPR006058	2Fe2S_fd_BS
IPR001041	2Fe-2S_ferredoxin-type
IPR012675	Beta-grasp_dom_sf
IPR010241	Fd_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11316-RA	Carg11316-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 52..145 e-value: 2.7E-49 score: 162.9
IPR012675	Beta-grasp domain superfamily	GENE3D	G3DSA:3.10.20.30		coord: 50..147 e-value: 3.9E-34 score: 118.5
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 59..132 e-value: 4.3E-19 score: 68.2
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 53..143 score: 12.8
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 55..138 e-value: 7.67289E-32 score: 109.407
None	No IPR available	PANTHER	PTHR43112:SF4	FERREDOXIN-3, CHLOROPLASTIC-RELATED	coord: 16..146
None	No IPR available	PANTHER	PTHR43112	FAMILY NOT NAMED	coord: 16..146
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 89..97
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	SSF54292	2Fe-2S ferredoxin-like	coord: 50..143

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11316	Cla013019	Watermelon (97103) v1	carwmB0655
Carg11316	Csa3G222790	Cucumber (Chinese Long) v2	carcuB0675
Carg11316	MELO3C019438	Melon (DHL92) v3.5.1	carmeB0651
Carg11316	ClCG05G009510	Watermelon (Charleston Gray)	carwcgB0636
Carg11316	CSPI03G19080	Wild cucumber (PI 183967)	carcpiB0685
Carg11316	Cucsa.032940	Cucumber (Gy14) v1	carcgyB0730
Carg11316	CmaCh04G005340	Cucurbita maxima (Rimu)	carcmaB0925
Carg11316	CmoCh04G005700	Cucurbita moschata (Rifu)	carcmoB0899
Carg11316	CmoCh16G004200	Cucurbita moschata (Rifu)	carcmoB0898
Carg11316	Lsi05G001640	Bottle gourd (USVL1VR-Ls)	carlsiB595
Carg11316	Cp4.1LG01g01870	Cucurbita pepo (Zucchini)	carcpeB0927
Carg11316	CsGy3G018990	Cucumber (Gy14) v2	carcgybB0650
Carg11316	MELO3C019438.2	Melon (DHL92) v3.6.1	carmedB0661
Carg11316	CsaV3_3G019210	Cucumber (Chinese Long) v3	carcucB0687
Carg11316	Cla97C05G091890	Watermelon (97103) v2	carwmbB0681
Carg11316	Bhi01G001192	Wax gourd	carwgoB0771

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11316	Carg13204	Silver-seed gourd	carcarB051

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11316	Cucurbita maxima (Rimu)	carcmaB0924
Carg11316	Cucurbita pepo (Zucchini)	carcpeB0926