CmoCh04G005700 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G005700
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Benzoate 1,2-dioxygenase electron transfer component
Location	Cmo_Chr04 : 2838921 .. 2839379 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGCACCACCGCACTCACCGCCCCAATTCCGGTCACCTCCTTCCTCCGGCGGCAGCAGCCGGTGACCGGGGTAAGCCTGAGGCCATTTCCCAACGTGGGTCAGTCTCTGTTTGGGCTGAAACTCGGCAGCAGCCGCGGTGGAAGCATGACAGTGATGGCATACAAGGTGAAGCTGATTACACCAGAGGGAGAGAAAGAGATTGAATGCAGCGGCGATGATTACATTCTTGATGCGGCGGAGGAAAGCGGCGTTGATCTGCCGTACTCTTGCAGAGCAGGGGCGTGTTCTTCGTGCATTGGGAAGCTGAAATCAGGGAAAGTGGATCAATCTGATAACAGCTTTCTTGATGATCAACAAATGGAAGATGGGTGGGTTCTGACTTGTGTTGCAAGGCCTGAATCTGATATTGTAATTGAGACCCACAAGGAGGAGGTCTTTGCTGATTCTGCCTAA

mRNA sequence

ATGGGCAGCACCACCGCACTCACCGCCCCAATTCCGGTCACCTCCTTCCTCCGGCGGCAGCAGCCGGTGACCGGGGTAAGCCTGAGGCCATTTCCCAACGTGGGTCAGTCTCTGTTTGGGCTGAAACTCGGCAGCAGCCGCGGTGGAAGCATGACAGTGATGGCATACAAGGTGAAGCTGATTACACCAGAGGGAGAGAAAGAGATTGAATGCAGCGGCGATGATTACATTCTTGATGCGGCGGAGGAAAGCGGCGTTGATCTGCCGTACTCTTGCAGAGCAGGGGCGTGTTCTTCGTGCATTGGGAAGCTGAAATCAGGGAAAGTGGATCAATCTGATAACAGCTTTCTTGATGATCAACAAATGGAAGATGGGTGGGTTCTGACTTGTGTTGCAAGGCCTGAATCTGATATTGTAATTGAGACCCACAAGGAGGAGGTCTTTGCTGATTCTGCCTAA

Coding sequence (CDS)

ATGGGCAGCACCACCGCACTCACCGCCCCAATTCCGGTCACCTCCTTCCTCCGGCGGCAGCAGCCGGTGACCGGGGTAAGCCTGAGGCCATTTCCCAACGTGGGTCAGTCTCTGTTTGGGCTGAAACTCGGCAGCAGCCGCGGTGGAAGCATGACAGTGATGGCATACAAGGTGAAGCTGATTACACCAGAGGGAGAGAAAGAGATTGAATGCAGCGGCGATGATTACATTCTTGATGCGGCGGAGGAAAGCGGCGTTGATCTGCCGTACTCTTGCAGAGCAGGGGCGTGTTCTTCGTGCATTGGGAAGCTGAAATCAGGGAAAGTGGATCAATCTGATAACAGCTTTCTTGATGATCAACAAATGGAAGATGGGTGGGTTCTGACTTGTGTTGCAAGGCCTGAATCTGATATTGTAATTGAGACCCACAAGGAGGAGGTCTTTGCTGATTCTGCCTAA

Homology

[Close]

BLAST of CmoCh04G005700 vs. Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.2e-48
Identity = 100/147 (68.03%), Postives = 120/147 (81.63%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLR--PFPNVGQSLFGLKLGSSRGGSMTVMA-YKVK 62
           ++TAL++ I  TSFLRRQQ  T +SLR  PF N  QSLFGLK  ++RGG +T MA YKVK
Sbjct: 2   ASTALSSAIVSTSFLRRQQ--TPISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVK 61

Query: 63  LITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDD 122
            ITPEGE+E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG +DQSD SFLDD
Sbjct: 62  FITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD 121

Query: 123 QQMEDGWVLTCVARPESDIVIETHKEE 147
           +QM +G+VLTCVA P SD+VIETHKEE
Sbjct: 122 EQMSEGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of CmoCh04G005700 vs. Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.3e-45
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVG-QSLFGLKLGSSRGGSMTVMA-YKVKL 62
           ++TAL++ I  TSF+RR      +SLR  P+   QSLFGLK G++RGG +T MA YKVK 
Sbjct: 2   ASTALSSAIVGTSFIRRSP--APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 122
           ITPEGE E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG VDQSD SFLDD+
Sbjct: 62  ITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDE 121

Query: 123 QMEDGWVLTCVARPESDIVIETHKEE 147
           Q+ +G+VLTC A P SD+ IETHKEE
Sbjct: 122 QIGEGFVLTCAAYPTSDVTIETHKEE 145

[Close]

BLAST of CmoCh04G005700 vs. Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-42
Identity = 87/141 (61.70%), Postives = 110/141 (78.01%), Query Frame = 1


Query: 6   ALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLITPE 65
           +++A +  TSF+ R+  VT  SL+P PNVG++LFGLK  S+ GG +T MA YKVKLITP+
Sbjct: 3   SVSATMISTSFMPRKPAVT--SLKPIPNVGEALFGLK--SANGGKVTCMASYKVKLITPD 62

Query: 66  GEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQMED 125
           G  E +C  + YILD AEE+G DLPYSCRAG+CSSC GK+  G VDQ+D +FLDD Q+E+
Sbjct: 63  GPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEE 122

Query: 126 GWVLTCVARPESDIVIETHKE 146
           GWVLTCVA P+SD+ IETHKE
Sbjct: 123 GWVLTCVAYPQSDVTIETHKE 139

[Close]

BLAST of CmoCh04G005700 vs. Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-41
Identity = 83/144 (57.64%), Postives = 105/144 (72.92%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLIT 62
           +T AL+     T+F  +  P+T        NVG++LFGLK  +SRG    + AYKV L+T
Sbjct: 4   TTAALSGATMSTAFAPKTPPMTAALPT---NVGRALFGLKSSASRGRVTAMAAYKVTLVT 63

Query: 63  PEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQM 122
           PEG++E+EC  D YILDAAEE+G+DLPYSCRAG+CSSC GK+ SG V+Q D SFLDD Q+
Sbjct: 64  PEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQI 123

Query: 123 EDGWVLTCVARPESDIVIETHKEE 147
           ++GWVLTCVA P  D+ IETHKEE
Sbjct: 124 KEGWVLTCVAYPTGDVTIETHKEE 144

[Close]

BLAST of CmoCh04G005700 vs. Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-40
Identity = 84/144 (58.33%), Postives = 103/144 (71.53%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLIT 62
           + T  T     T+F+ + Q    ++  P  N G+SLFGLK GS RGG MT+ AYKV L+T
Sbjct: 2   AATTTTMMGMATTFVPKPQAPPMMAALP-SNTGRSLFGLKTGS-RGGRMTMAAYKVTLVT 61

Query: 63  PEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQM 122
           P G  E +C  D YILDAAEE G+DLPYSCRAG+CSSC GKLK+G ++Q D SFLDD Q+
Sbjct: 62  PTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQI 121

Query: 123 EDGWVLTCVARPESDIVIETHKEE 147
           ++GWVLTC A P SD+ IETHKEE
Sbjct: 122 DEGWVLTCAAYPVSDVTIETHKEE 143

[Close]

BLAST of CmoCh04G005700 vs. TrEMBL
Match: A0A0A0L764_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G222800 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 7.1e-55
Identity = 106/149 (71.14%), Postives = 126/149 (84.56%), Query Frame = 1


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           M STTA+T+P P TSF+RR  P  GVS +PFPN+G+SL+GLK    RGG + + AYKVKL
Sbjct: 1   MSSTTAITSPFPATSFIRRN-PTGGVSFKPFPNMGESLYGLK---HRGGRLAMKAYKVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITP+GEK +EC  D YILDAAEESG+DLPYSCRAGACSSC+GK+ SGK+DQSD SFLDD+
Sbjct: 61  ITPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDE 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           Q+ +GWVLTCVARPESD+VIETHKE+ FA
Sbjct: 121 QVAEGWVLTCVARPESDLVIETHKEDSFA 145

[Close]

BLAST of CmoCh04G005700 vs. TrEMBL
Match: A0A067L2U1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04972 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.4e-48
Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLI 62
           ++TAL++ +  TSF RRQ PVT  SLR  PNVGQ+LFGLK  SSRGG    MA YKVKL+
Sbjct: 2   ASTALSSAMVSTSFTRRQ-PVT--SLRALPNVGQALFGLK--SSRGGKFKAMASYKVKLL 61

Query: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122
           TPEGEK IEC  D YILDAAEE+GVDLPYSCRAG+CSSC GK+  G+VDQSD SFLDD+Q
Sbjct: 62  TPEGEKVIECPDDVYILDAAEEAGVDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQ 121

Query: 123 MEDGWVLTCVARPESDIVIETHKEE 147
           ME+GWVLTCVA P SD+VIETHKEE
Sbjct: 122 MEEGWVLTCVAYPTSDVVIETHKEE 141

[Close]

BLAST of CmoCh04G005700 vs. TrEMBL
Match: F8SPG7_CAMSI (Chloroplast ferredoxin I OS=Camellia sinensis PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.5e-47
Identity = 101/147 (68.71%), Postives = 116/147 (78.91%), Query Frame = 1


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVK 60
           M    +L++ +  TSFL+RQQPVT  SLR  PNVGQ+LFG+K G  RGG +T MA YKVK
Sbjct: 1   MAMAASLSSTMVSTSFLQRQQPVT--SLRSLPNVGQALFGVKGG--RGGRVTAMAMYKVK 60

Query: 61  LITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDD 120
           L+TPEG +E EC  D YILD AEE G+DLPYSCRAG+CSSC GKL  GKVDQSD SFLDD
Sbjct: 61  LLTPEGPQEFECPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKLTGGKVDQSDGSFLDD 120

Query: 121 QQMEDGWVLTCVARPESDIVIETHKEE 147
            QM+ GWVLTCVA P+SD+VIETHKEE
Sbjct: 121 DQMDGGWVLTCVAYPQSDVVIETHKEE 143

[Close]

BLAST of CmoCh04G005700 vs. TrEMBL
Match: V4L7K7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009020mg PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.1e-46
Identity = 99/146 (67.81%), Postives = 117/146 (80.14%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVG-QSLFGLKLGSSRGGSMTVMA-YKVKL 62
           ++TAL++ I  TSFLRRQQ  T +SLR  P    QSLFGLK  ++RGG +T MA YKVK 
Sbjct: 2   ASTALSSAIVSTSFLRRQQ--TPISLRSLPAANTQSLFGLKSSTARGGRVTAMATYKVKF 61

Query: 63  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 122
           ITPEGE+E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG +DQSD SFLDD 
Sbjct: 62  ITPEGEQEVECEDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDD 121

Query: 123 QMEDGWVLTCVARPESDIVIETHKEE 147
           QM DG+VLTCVA P SD+VIETHKEE
Sbjct: 122 QMNDGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of CmoCh04G005700 vs. TrEMBL
Match: B9SXF4_RICCO (Ferredoxin-2, chloroplast, putative OS=Ricinus communis GN=RCOM_0321060 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 6.0e-46
Identity = 102/145 (70.34%), Postives = 117/145 (80.69%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLI 62
           ++TAL++ +  TSF RRQ PVT  SLR  PNVGQ+LFGL   SSRGG    MA +KVKLI
Sbjct: 2   ASTALSSAVVSTSFTRRQ-PVT--SLRALPNVGQALFGLN--SSRGGKFKAMAVHKVKLI 61

Query: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122
           TPEGEKE+EC  D YILD  EE+GVDLPYSCRAG+CSSC GK+ SG +DQSD SFLDD+Q
Sbjct: 62  TPEGEKELECPDDVYILDHFEEAGVDLPYSCRAGSCSSCAGKVVSGTLDQSDGSFLDDEQ 121

Query: 123 MEDGWVLTCVARPESDIVIETHKEE 147
           ME GWVLTCVA P+SD+VIETHKEE
Sbjct: 122 MEAGWVLTCVAYPQSDLVIETHKEE 141

[Close]

BLAST of CmoCh04G005700 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 192.2 bits (487), Expect = 2.3e-49
Identity = 100/147 (68.03%), Postives = 120/147 (81.63%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLR--PFPNVGQSLFGLKLGSSRGGSMTVMA-YKVK 62
           ++TAL++ I  TSFLRRQQ  T +SLR  PF N  QSLFGLK  ++RGG +T MA YKVK
Sbjct: 2   ASTALSSAIVSTSFLRRQQ--TPISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVK 61

Query: 63  LITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDD 122
            ITPEGE+E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG +DQSD SFLDD
Sbjct: 62  FITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD 121

Query: 123 QQMEDGWVLTCVARPESDIVIETHKEE 147
           +QM +G+VLTCVA P SD+VIETHKEE
Sbjct: 122 EQMSEGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of CmoCh04G005700 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 182.2 bits (461), Expect = 2.4e-46
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVG-QSLFGLKLGSSRGGSMTVMA-YKVKL 62
           ++TAL++ I  TSF+RR      +SLR  P+   QSLFGLK G++RGG +T MA YKVK 
Sbjct: 2   ASTALSSAIVGTSFIRRSP--APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 122
           ITPEGE E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG VDQSD SFLDD+
Sbjct: 62  ITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDE 121

Query: 123 QMEDGWVLTCVARPESDIVIETHKEE 147
           Q+ +G+VLTC A P SD+ IETHKEE
Sbjct: 122 QIGEGFVLTCAAYPTSDVTIETHKEE 145

[Close]

BLAST of CmoCh04G005700 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 142.5 bits (358), Expect = 2.1e-34
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 1


Query: 39  FGLKLGSSRGGSMTVMAYKVKLITPEG-EKEIECSGDDYILDAAEESGVDLPYSCRAGAC 98
           FGLK  ++ GG+     YKVKL+ P+G E E E   D YILDAAEE+GVDLPYSCRAGAC
Sbjct: 44  FGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGAC 103

Query: 99  SSCIGKLKSGKVDQSDNSFLDDQQMEDGWVLTCVARPESDIVIETHKE 146
           S+C G++ SG VDQSD SFL+D  +E G+VLTCVA P+SD VI THKE
Sbjct: 104 STCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKE 151

[Close]

BLAST of CmoCh04G005700 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4)

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-26
Identity = 59/107 (55.14%), Postives = 79/107 (73.83%), Query Frame = 1


Query: 43  LGSSRGGSMTVMAY---KVKLITPEGEK-EIECSGDDYILDAAEESGVDLPYSCRAGACS 102
           L SSRG    V A    KVKLI+PEGE+ EIE + D  IL++AE +G++LPYSCR+G C 
Sbjct: 38  LSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCG 97

Query: 103 SCIGKLKSGKVDQSDNSFLDDQQMEDGWVLTCVARPESDIVIETHKE 146
           +C GKL SGKVDQS  SFL+++Q++ G++LTC+A P  D V+ THK+
Sbjct: 98  TCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQ 144

[Close]

BLAST of CmoCh04G005700 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 6.0e-13
Identity = 49/141 (34.75%), Postives = 66/141 (46.81%), Query Frame = 1


Query: 8   TAPIPV-TSFLRRQQPVTGVSLR-PFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLITPEG 67
           T P+P  TS +   +P    S   P  N   S    +      G +   AYKV +     
Sbjct: 3   TLPLPTQTSTISLPKPYLSNSFSFPLRNATLSTTTNRRNFLTTGRIIARAYKVVVEHDGK 62

Query: 68  EKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQMEDG 127
             E+E   D+ IL  A +SG+D+PY C  G C +C  KL +G VDQS    L D  +E G
Sbjct: 63  TTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-GGMLSDDVVERG 122

Query: 128 WVLTCVARPESDIVIETHKEE 147
           + L C + P SD  I+   EE
Sbjct: 123 YTLLCASYPTSDCHIKMIPEE 142

[Close]

BLAST of CmoCh04G005700 vs. NCBI nr
Match: gi|659112074|ref|XP_008456052.1| (PREDICTED: ferredoxin-like [Cucumis melo])

HSP 1 Score: 226.5 bits (576), Expect = 3.2e-56
Identity = 112/149 (75.17%), Postives = 125/149 (83.89%), Query Frame = 1


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           MGSTTA T+P P TSFLRR  P  GVSL+PFPN+G+SLFGLK    RGG +T MAY VKL
Sbjct: 1   MGSTTAFTSPFPATSFLRRN-PTGGVSLKPFPNMGESLFGLK---HRGGRVTAMAYNVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITPEGEK I C  D YILDAAEE+G+DLPYSCRAGACSSCIGK+ SGK+DQSD SFLDD 
Sbjct: 61  ITPEGEKSITCPDDAYILDAAEENGIDLPYSCRAGACSSCIGKVVSGKLDQSDQSFLDDD 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           Q+ +GWVLTCVAR ESD+VIETHKE+VFA
Sbjct: 121 QVAEGWVLTCVARAESDVVIETHKEDVFA 145

[Close]

BLAST of CmoCh04G005700 vs. NCBI nr
Match: gi|449457045|ref|XP_004146259.1| (PREDICTED: ferredoxin, leaf L-A-like [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 1.0e-54
Identity = 106/149 (71.14%), Postives = 126/149 (84.56%), Query Frame = 1


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           M STTA+T+P P TSF+RR  P  GVS +PFPN+G+SL+GLK    RGG + + AYKVKL
Sbjct: 1   MSSTTAITSPFPATSFIRRN-PTGGVSFKPFPNMGESLYGLK---HRGGRLAMKAYKVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITP+GEK +EC  D YILDAAEESG+DLPYSCRAGACSSC+GK+ SGK+DQSD SFLDD+
Sbjct: 61  ITPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDE 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           Q+ +GWVLTCVARPESD+VIETHKE+ FA
Sbjct: 121 QVAEGWVLTCVARPESDLVIETHKEDSFA 145

[Close]

BLAST of CmoCh04G005700 vs. NCBI nr
Match: gi|802591910|ref|XP_012071291.1| (PREDICTED: ferredoxin-A-like [Jatropha curcas])

HSP 1 Score: 198.0 bits (502), Expect = 1.2e-47
Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLI 62
           ++TAL++ +  TSF RRQ PVT  SLR  PNVGQ+LFGLK  SSRGG    MA YKVKL+
Sbjct: 2   ASTALSSAMVSTSFTRRQ-PVT--SLRALPNVGQALFGLK--SSRGGKFKAMASYKVKLL 61

Query: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122
           TPEGEK IEC  D YILDAAEE+GVDLPYSCRAG+CSSC GK+  G+VDQSD SFLDD+Q
Sbjct: 62  TPEGEKVIECPDDVYILDAAEEAGVDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQ 121

Query: 123 MEDGWVLTCVARPESDIVIETHKEE 147
           ME+GWVLTCVA P SD+VIETHKEE
Sbjct: 122 MEEGWVLTCVAYPTSDVVIETHKEE 141

[Close]

BLAST of CmoCh04G005700 vs. NCBI nr
Match: gi|338173755|gb|AEI83424.1| (chloroplast ferredoxin I [Camellia sinensis])

HSP 1 Score: 196.4 bits (498), Expect = 3.5e-47
Identity = 101/147 (68.71%), Postives = 116/147 (78.91%), Query Frame = 1


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVK 60
           M    +L++ +  TSFL+RQQPVT  SLR  PNVGQ+LFG+K G  RGG +T MA YKVK
Sbjct: 1   MAMAASLSSTMVSTSFLQRQQPVT--SLRSLPNVGQALFGVKGG--RGGRVTAMAMYKVK 60

Query: 61  LITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDD 120
           L+TPEG +E EC  D YILD AEE G+DLPYSCRAG+CSSC GKL  GKVDQSD SFLDD
Sbjct: 61  LLTPEGPQEFECPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKLTGGKVDQSDGSFLDD 120

Query: 121 QQMEDGWVLTCVARPESDIVIETHKEE 147
            QM+ GWVLTCVA P+SD+VIETHKEE
Sbjct: 121 DQMDGGWVLTCVAYPQSDVVIETHKEE 143

[Close]

BLAST of CmoCh04G005700 vs. NCBI nr
Match: gi|567153134|ref|XP_006417400.1| (hypothetical protein EUTSA_v10009020mg [Eutrema salsugineum])

HSP 1 Score: 193.4 bits (490), Expect = 3.0e-46
Identity = 99/146 (67.81%), Postives = 117/146 (80.14%), Query Frame = 1


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVG-QSLFGLKLGSSRGGSMTVMA-YKVKL 62
           ++TAL++ I  TSFLRRQQ  T +SLR  P    QSLFGLK  ++RGG +T MA YKVK 
Sbjct: 2   ASTALSSAIVSTSFLRRQQ--TPISLRSLPAANTQSLFGLKSSTARGGRVTAMATYKVKF 61

Query: 63  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 122
           ITPEGE+E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG +DQSD SFLDD 
Sbjct: 62  ITPEGEQEVECEDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDD 121

Query: 123 QMEDGWVLTCVARPESDIVIETHKEE 147
           QM DG+VLTCVA P SD+VIETHKEE
Sbjct: 122 QMNDGYVLTCVAYPTSDVVIETHKEE 145

The following BLAST results are available for this feature:

BLAST of CmoCh04G005700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FER1_ARATH	4.2e-48	68.03	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1	[more]
FER2_ARATH	4.3e-45	63.70	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1	[more]
FER_CAPAN	1.5e-42	61.70	Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1	[more]
FER1_MESCR	1.7e-41	57.64	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1	[more]
FER1_SPIOL	1.1e-40	58.33	Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2	[more]

BLAST of CmoCh04G005700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L764_CUCSA	7.1e-55	71.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G222800 PE=4 SV=1	[more]
A0A067L2U1_JATCU	8.4e-48	72.41	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04972 PE=4 SV=1	[more]
F8SPG7_CAMSI	2.5e-47	68.71	Chloroplast ferredoxin I OS=Camellia sinensis PE=2 SV=1	[more]
V4L7K7_EUTSA	2.1e-46	67.81	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009020mg PE=4 SV=1	[more]
B9SXF4_RICCO	6.0e-46	70.34	Ferredoxin-2, chloroplast, putative OS=Ricinus communis GN=RCOM_0321060 PE=4 SV=...	[more]

BLAST of CmoCh04G005700 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10960.1	2.3e-49	68.03	ferredoxin 1	[more]
AT1G60950.1	2.4e-46	63.70	2Fe-2S ferredoxin-like superfamily protein	[more]
AT2G27510.1	2.1e-34	63.89	ferredoxin 3	[more]
AT5G10000.1	8.1e-26	55.14	ferredoxin 4	[more]
AT4G14890.1	6.0e-13	34.75	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of CmoCh04G005700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112074\|ref\|XP_008456052.1\|	3.2e-56	75.17	PREDICTED: ferredoxin-like [Cucumis melo]	[more]
gi\|449457045\|ref\|XP_004146259.1\|	1.0e-54	71.14	PREDICTED: ferredoxin, leaf L-A-like [Cucumis sativus]	[more]
gi\|802591910\|ref\|XP_012071291.1\|	1.2e-47	72.41	PREDICTED: ferredoxin-A-like [Jatropha curcas]	[more]
gi\|338173755\|gb\|AEI83424.1\|	3.5e-47	68.71	chloroplast ferredoxin I [Camellia sinensis]	[more]
gi\|567153134\|ref\|XP_006417400.1\|	3.0e-46	67.81	hypothetical protein EUTSA_v10009020mg [Eutrema salsugineum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001041	2Fe-2S_ferredoxin-type
IPR006058	2Fe2S_fd_BS
IPR010241	Fd_pln
IPR012675	Beta-grasp_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0051536	iron-sulfur cluster binding
GO:0051537	2 iron, 2 sulfur cluster binding

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0009639	response to red or far red light
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009536	plastid
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G005700.1	CmoCh04G005700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 62..134 score: 2.6
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 56..146 score: 13
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 53..148 score: 2.36
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 92..100 scor
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAMs	TIGR02008	TIGR02008	coord: 55..146 score: 4.7
IPR012675	Beta-grasp domain	GENE3D	G3DSA:3.10.20.30		coord: 54..147 score: 3.1
None	No IPR available	PANTHER	PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	coord: 16..146 score: 2.9
None	No IPR available	PANTHER	PTHR19370:SF120	FERREDOXIN-1, CHLOROPLASTIC-RELATED	coord: 16..146 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G005700	Cucsa.032940	Cucumber (Gy14) v1	cgycmoB0012
CmoCh04G005700	CmaCh04G005340	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G005700	Cla013019	Watermelon (97103) v1	cmowmB699
CmoCh04G005700	Csa3G222790	Cucumber (Chinese Long) v2	cmocuB687
CmoCh04G005700	MELO3C019438	Melon (DHL92) v3.5.1	cmomeB683
CmoCh04G005700	ClCG05G009510	Watermelon (Charleston Gray)	cmowcgB660
CmoCh04G005700	CSPI03G19080	Wild cucumber (PI 183967)	cmocpiB698
CmoCh04G005700	Lsi05G001640	Bottle gourd (USVL1VR-Ls)	cmolsiB683
CmoCh04G005700	Cp4.1LG01g01870	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G005700	MELO3C019438.2	Melon (DHL92) v3.6.1	cmomedB774
CmoCh04G005700	CsaV3_3G019210	Cucumber (Chinese Long) v3	cmocucB0814
CmoCh04G005700	Cla97C05G091890	Watermelon (97103) v2	cmowmbB735
CmoCh04G005700	Bhi01G001192	Wax gourd	cmowgoB0849
CmoCh04G005700	CsGy3G018990	Cucumber (Gy14) v2	cgybcmoB386
CmoCh04G005700	Carg11316	Silver-seed gourd	carcmoB0899
CmoCh04G005700	Carg13204	Silver-seed gourd	carcmoB0058

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G005700	CmoCh16G004200	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G005700	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G005700	Cucurbita pepo (Zucchini)	cmocpeB668