Lsi01G011580 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G011580
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Photosystem I reaction center subunit N
Location	chr01 : 9740127 .. 9741968 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAAAATAGAAGTTGCTTCATGGCAACGAAGAACTGGAATTTGAAGCGCTCGTTTAAGATTTCGAAGTGGGTCCAAAATTGAACCTCGCCACACAAATTTCCATGTCCGAAAACCCTAATCACAGCCATGGTTTGCCAATTGGGAGTGAGGAAATCTCACCTTATCCACACTCTCACCACAATCCCTTATCCAATTCCATCTCAAACATCCCCTCTTTTATCAGATTCCCTCATAATCCCATTATCCCATTAACAACTGACCGCCATTAATTCCATCTCTGAGTTTGTCCAACCAAGTTGCAATCCAATGGCGACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGCGCTGGATCGGCTGACCTGAACTCCAAACTCACTGCCGTCCCGTCTGTTGCGACTCCTGGGGTTGCGGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGTAACTATACATAAAAGTTCAAATTGCTTTTATCAAATGCTCTGTTTCCATACTTTGAGTTAGCATAAAATAATAAGAATGTGTTTTGGTTCCTGTTGTTGCTGAATTTCCATAGTATATGAAACAGAAATCTTATGTGGGATTTGTATATGTCAGTGCTTTCACCCATCCACTTAAATTTTTGGGTTAATCCAATTCCTACAATATTATATCCTCTCCGATTAATATTGATTTTCTACATATTTTAAGCCCACAAGTGAGAAAAATTATTAAATGGTATATTATTAAATTTACCTTCATCCATTTATTTAAGTTTTTGAATCAATAGGTGATTTAAGAGTGTCTTAAACTAGAAGTATCTATCAAGTACGCTGACTGTTTGAGTCTTTAAGATTCATGTTGAATGTTATGCTGAAGTTTGAAGCTGAGGACTAATATAGAAATAGAATGTTTCAAAGTATAAGGAAAGGATCAAAAGTAAAGGGACTGAAAACAGGATTTAGATGAAAAATCTTTCATGTTTCTTACCCTGTTATTGCAATTTGCAACAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGGTTTGGACATGGTTTAGTTGTAATCACTATTGGTATTTTTGAATTGTTAACAATATGGGATGAGTTTTTGCTGAGTACTAAGTTAGTTCTCTGTTCTGTTTTTGATGGATGCAGAAAGTTCCATTTATCACTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGAAGAGAACCATTTTATTGAAGTCTTTGTATCCCTCACCACCATTAGTTACTCTTCCCCTTGTATCTAATTTTCAACTCTTAAAAAGTGTGAAATTTTATTATGCCTTTTTGGGGACAGGTGTTCCAGTTCCATTGCTTTCATTCTTCTCTTGAGACCAAAAGAAGCAAAATGAGAAAGTAGAAACCCTAGATATCTATTGCATTAACTTTTGTTAGAATTCTTCCTCAATAAACATCATACGTGCATTTTTTACAAGTATAATTGGGGTTGGGATGTGAACCATGGACCTCTTGGTCTTTGACTCTTTAACATATACTAATGTTAGTTGAGCTAAGTTTTTTTTTTTA

mRNA sequence

TAATAAAATAGAAGTTGCTTCATGGCAACGAAGAACTGGAATTTGAAGCGCTCGTTTAAGATTTCGAAGTGGGTCCAAAATTGAACCTCGCCACACAAATTTCCATGTCCGAAAACCCTAATCACAGCCATGGTTTGCCAATTGGGAGTGAGGAAATCTCACCTTATCCACACTCTCACCACAATCCCTTATCCAATTCCATCTCAAACATCCCCTCTTTTATCAGATTCCCTCATAATCCCATTATCCCATTAACAACTGACCGCCATTAATTCCATCTCTGAGTTTGTCCAACCAAGTTGCAATCCAATGGCGACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGCGCTGGATCGGCTGACCTGAACTCCAAACTCACTGCCGTCCCGTCTGTTGCGACTCCTGGGGTTGCGGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGAAAGTTCCATTTATCACTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGAAGAGAACCATTTTATTGAAGTCTTTGTATCCCTCACCACCATTAGTTACTCTTCCCCTTGTATCTAATTTTCAACTCTTAAAAAGTGTGAAATTTTATTATGCCTTTTTGGGGACAGGTGTTCCAGTTCCATTGCTTTCATTCTTCTCTTGAGACCAAAAGAAGCAAAATGAGAAAGTAGAAACCCTAGATATCTATTGCATTAACTTTTGTTAGAATTCTTCCTCAATAAACATCATACGTGCATTTTTTACAAGTATAATTGGGGTTGGGATGTGAACCATGGACCTCTTGGTCTTTGACTCTTTAACATATACTAATGTTAGTTGAGCTAAGTTTTTTTTTTTA

Coding sequence (CDS)

ATGGCGACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGCGCTGGATCGGCTGACCTGAACTCCAAACTCACTGCCGTCCCGTCTGTTGCGACTCCTGGGGTTGCGGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGAAAGTTCCATTTATCACTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

Protein sequence

MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW

Homology

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BLAST of Lsi01G011580 vs. Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 219.2 bits (557), Expect = 3.6e-56
Identity = 114/173 (65.90%), Postives = 140/173 (80.92%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKL-PAIRAQQARVPEAK-N 60
           MA MNSSVL C+YAI+G+GS +LN K+  V S    G     + P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  EGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARA 120
            GRR+A+++L ATLF+ AA   ++SANAGVI++YLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAV--SASANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           +TV+FG+CKFPENFTGCQDLAKQKKVPFI++D+ LECEGKDKYKCGSNVFWKW
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

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BLAST of Lsi01G011580 vs. Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.3e-45
Identity = 97/143 (67.83%), Postives = 107/143 (74.83%), Query Frame = 1


Query: 29  AVPSVATPGVAGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGV 88
           AVP  A+P  A            RV  A  + RR+ALL L A    AA AAS  SA A V
Sbjct: 16  AVPQSASPAAA-----------KRVQVAPAKDRRSALLGLAAVF--AATAASAGSARASV 75

Query: 89  IEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFIT 148
            ++YLEKSK NKELNDKKR ATSGANFARAYTV+FG+CKFP NFTGCQDLAKQKKVPFIT
Sbjct: 76  FDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFIT 135

Query: 149 DDLELECEGKDKYKCGSNVFWKW 172
           DDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 136 DDLEIECEGKEKFKCGSNVFWKW 145

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BLAST of Lsi01G011580 vs. Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.2e-41
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 1


Query: 80  SNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLA 139
           +  SA A + ++YLEKSKANKELNDKKRLATSGANFARAYTVEFG+C+FP NFTGCQDLA
Sbjct: 21  TTGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLA 80

Query: 140 KQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           KQKKVPFI+DDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 81  KQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112

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BLAST of Lsi01G011580 vs. Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-25
Identity = 71/132 (53.79%), Postives = 86/132 (65.15%), Query Frame = 1


Query: 45  AIRAQQARVPEAK-----------NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYL 104
           A+RAQ A+V  A+           +   R  LL LG  L AAA A +   ANAGV+ED L
Sbjct: 4   AMRAQCAKVQAARPARATTVVCRASAQSRRELLGLGVLLGAAALAPA---ANAGVVEDLL 63

Query: 105 EKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLEL 164
            KS ANK LN+KKRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I +DL++
Sbjct: 64  AKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKI 123

Query: 165 ECEGKDKYKCGS 166
           ECEGKD   CGS
Sbjct: 124 ECEGKDAKSCGS 132

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BLAST of Lsi01G011580 vs. TrEMBL
Match: A0A0A0KFM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.0e-86
Identity = 164/171 (95.91%), Postives = 168/171 (98.25%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTA PSVA+PGV GYKLPAIRAQQ +VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGA+LFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

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BLAST of Lsi01G011580 vs. TrEMBL
Match: F6I0D9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 6.1e-71
Identity = 140/175 (80.00%), Postives = 158/175 (90.29%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAK--- 60
           MA++NSSVLACNYAISGAG+ +LNSKL ++PS A+P VAG KLPAIRAQQARV ++K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
             EGRR AL+YL ATLF  AAA  +SSANAGVI+DYLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  AGEGRRAALVYLAATLFTTAAA--SSSANAGVIDDYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           RAYTV+FGTCKFPENFTGCQDLAK+KKVPF+++DLELECEG+DKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRDKYKCGSNVFWKW 173

[Close]

BLAST of Lsi01G011580 vs. TrEMBL
Match: G7JAX6_MEDTR (Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 PE=2 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.4e-70
Identity = 140/175 (80.00%), Postives = 155/175 (88.57%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAK--- 60
           MA MNSSVLAC+YAISG+   +LN+KL +VPS A+PGV+G KLP I+AQQ R+PEAK   
Sbjct: 1   MAAMNSSVLACSYAISGS---ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
            ++GRR AL  L ATLF  A +ASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           RAYTV+FGTCKFPENFTGCQDLAKQKKVPFIT+DLELECEGKDKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172

[Close]

BLAST of Lsi01G011580 vs. TrEMBL
Match: A0A0S3QY87_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G076000 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.6e-69
Identity = 135/172 (78.49%), Postives = 156/172 (90.70%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAK-NE 60
           M+ MNSSVLACNYA SG   +DLN+KLT++PSVA+P  +  KLP I+A QA+V E++ N+
Sbjct: 1   MSAMNSSVLACNYARSGC--SDLNAKLTSMPSVASPQASALKLPVIKAHQAKVTESESNQ 60

Query: 61  GRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAY 120
           GRR++L+YL ATLF AAAAASNSSANAG+IE+YLE+SK NKELNDKKRLAT+GANFARAY
Sbjct: 61  GRRSSLVYLAATLFTAAAAASNSSANAGIIEEYLERSKTNKELNDKKRLATTGANFARAY 120

Query: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           TVEFGTCKFPENFTGCQDLAKQKKVPF++DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFLSDDLELECEGKDKYKCGSNVFWKW 170

[Close]

BLAST of Lsi01G011580 vs. TrEMBL
Match: A0A0L9TJG3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g016500 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.6e-69
Identity = 135/172 (78.49%), Postives = 156/172 (90.70%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAK-NE 60
           M+ MNSSVLACNYA SG   +DLN+KLT++PSVA+P  +  KLP I+A QA+V E++ N+
Sbjct: 1   MSAMNSSVLACNYARSGC--SDLNAKLTSMPSVASPQASALKLPVIKAHQAKVTESESNQ 60

Query: 61  GRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAY 120
           GRR++L+YL ATLF AAAAASNSSANAG+IE+YLE+SK NKELNDKKRLAT+GANFARAY
Sbjct: 61  GRRSSLVYLAATLFTAAAAASNSSANAGIIEEYLERSKTNKELNDKKRLATTGANFARAY 120

Query: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           TVEFGTCKFPENFTGCQDLAKQKKVPF++DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFLSDDLELECEGKDKYKCGSNVFWKW 170

[Close]

BLAST of Lsi01G011580 vs. TAIR10
Match: AT5G64040.2 (AT5G64040.2 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN))

HSP 1 Score: 158.3 bits (399), Expect = 4.2e-39
Identity = 89/144 (61.81%), Postives = 112/144 (77.78%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKL-PAIRAQQARVPEAK-N 60
           MA MNSSVL C+YAI+G+GS +LN K+  V S    G     + P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  EGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARA 120
            GRR+A+++L ATLF+ AA ++  SANAGVI++YLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAVSA--SANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVEFGTCKFPENFTGCQDLAKQK 143
           +TV+FG+CKFPENFTGCQDLAKQK
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQK 142

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BLAST of Lsi01G011580 vs. NCBI nr
Match: gi|659080932|ref|XP_008441057.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo])

HSP 1 Score: 332.8 bits (852), Expect = 3.5e-88
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTAVPSVA+PGV GYKLPAIRAQQARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Lsi01G011580 vs. NCBI nr
Match: gi|449461859|ref|XP_004148659.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 4.3e-86
Identity = 164/171 (95.91%), Postives = 168/171 (98.25%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTA PSVA+PGV GYKLPAIRAQQ +VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGA+LFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Lsi01G011580 vs. NCBI nr
Match: gi|359476926|ref|XP_003631913.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifera])

HSP 1 Score: 275.0 bits (702), Expect = 8.8e-71
Identity = 140/175 (80.00%), Postives = 158/175 (90.29%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAK--- 60
           MA++NSSVLACNYAISGAG+ +LNSKL ++PS A+P VAG KLPAIRAQQARV ++K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
             EGRR AL+YL ATLF  AAA  +SSANAGVI+DYLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  AGEGRRAALVYLAATLFTTAAA--SSSANAGVIDDYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           RAYTV+FGTCKFPENFTGCQDLAK+KKVPF+++DLELECEG+DKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRDKYKCGSNVFWKW 173

[Close]

BLAST of Lsi01G011580 vs. NCBI nr
Match: gi|357464531|ref|XP_003602547.1| (photosystem I reaction center subunit N [Medicago truncatula])

HSP 1 Score: 273.9 bits (699), Expect = 2.0e-70
Identity = 140/175 (80.00%), Postives = 155/175 (88.57%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAK--- 60
           MA MNSSVLAC+YAISG+   +LN+KL +VPS A+PGV+G KLP I+AQQ R+PEAK   
Sbjct: 1   MAAMNSSVLACSYAISGS---ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
            ++GRR AL  L ATLF  A +ASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           RAYTV+FGTCKFPENFTGCQDLAKQKKVPFIT+DLELECEGKDKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172

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BLAST of Lsi01G011580 vs. NCBI nr
Match: gi|743861697|ref|XP_011031185.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Populus euphratica])

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69
Identity = 140/174 (80.46%), Postives = 155/174 (89.08%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAK--- 60
           MA MNSSVLACNYAISG GS++LN+K+ ++P+VA+P V+G KLP IRAQQAR    +   
Sbjct: 1   MAAMNSSVLACNYAISGTGSSELNAKIVSMPAVASPVVSGPKLPVIRAQQARADSKEMKA 60

Query: 61  NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 120
           +EGRR AL+YL ATLF +AAAA  SSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR
Sbjct: 61  SEGRRDALVYLAATLFTSAAAA--SSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 120

Query: 121 AYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           AYTV+FGTCKFPENFTGCQDLAKQKKVPFI+DDL LECEGKDKYKCGSNVFWKW
Sbjct: 121 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 172

The following BLAST results are available for this feature:

BLAST of Lsi01G011580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAN_ARATH	3.6e-56	65.90	Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana G...	[more]
PSAN_HORVU	6.3e-45	67.83	Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSA...	[more]
PSAN_MAIZE	4.2e-41	82.61	Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN...	[more]
PSAN_VOLCA	1.9e-25	53.79	Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN...	[more]

BLAST of Lsi01G011580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFM1_CUCSA	3.0e-86	95.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1	[more]
F6I0D9_VITVI	6.1e-71	80.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=...	[more]
G7JAX6_MEDTR	1.4e-70	80.00	Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 P...	[more]
A0A0S3QY87_PHAAN	2.6e-69	78.49	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G076000 PE=...	[more]
A0A0L9TJG3_PHAAN	2.6e-69	78.49	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g016500 PE=4 SV=1	[more]

BLAST of Lsi01G011580 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64040.2	4.2e-39	61.81	photosystem I reaction center subunit PSI-N, chloroplast, putative /...	[more]

BLAST of Lsi01G011580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080932\|ref\|XP_008441057.1\|	3.5e-88	98.83	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]	[more]
gi\|449461859\|ref\|XP_004148659.1\|	4.3e-86	95.91	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativ...	[more]
gi\|359476926\|ref\|XP_003631913.1\|	8.8e-71	80.00	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifer...	[more]
gi\|357464531\|ref\|XP_003602547.1\|	2.0e-70	80.00	photosystem I reaction center subunit N [Medicago truncatula]	[more]
gi\|743861697\|ref\|XP_011031185.1\|	1.3e-69	80.46	PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Populus ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I

Vocabulary: **INTERPRO**
Term	Definition
IPR008796	PSAN

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0035304	regulation of protein dephosphorylation
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G011580.1	Lsi01G011580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	GENE3D	G3DSA:4.10.1190.10		coord: 87..171 score: 1.0
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PFAM	PF05479	PsaN	coord: 44..171 score: 2.4
None	No IPR available	PANTHER	PTHR36814	FAMILY NOT NAMED	coord: 2..171 score: 3.7
None	No IPR available	PANTHER	PTHR36814:SF1	PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC	coord: 2..171 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G011580	Csa6G483300	Cucumber (Chinese Long) v2	culsiB434
Lsi01G011580	CSPI06G26390	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G011580	Cucsa.100880	Cucumber (Gy14) v1	cgylsiB125
Lsi01G011580	CmaCh03G010990	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G011580	CmaCh07G008060	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G011580	CmoCh07G008310	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G011580	CmoCh03G010840	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G011580	Cla008429	Watermelon (97103) v1	lsiwmB142
Lsi01G011580	MELO3C008060	Melon (DHL92) v3.5.1	lsimeB150
Lsi01G011580	ClCG01G015380	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G011580	MELO3C008060.2	Melon (DHL92) v3.6.1	lsimedB157
Lsi01G011580	Cla97C01G014340	Watermelon (97103) v2	lsiwmbB115
Lsi01G011580	Bhi03G001038	Wax gourd	lsiwgoB183
Lsi01G011580	Cp4.1LG19g12170	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G011580	Cp4.1LG10g03660	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G011580	CsGy6G025880	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G011580	Carg10530	Silver-seed gourd	carlsiB214
Lsi01G011580	Carg05317	Silver-seed gourd	carlsiB742
Lsi01G011580	CsaV3_6G041600	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None