CmoCh07G008310 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGACCATGAATTCCAGCGTCTTGGCCTGCAACTACGCCATTTCAGGTGCTGGATCCGCCGAGCTTAACTCGAAACTCAGCGCCGTGACTTCTGTTGCGTCGCCTGGGGTTTCTGGTTACAAGTTGCCTGCGATTAGGGCTCGACAGGCTAGGGTTCCTGAAGCTAAGAATGAAGGAAGGAGAACTGCGCTTCTCTTCCTTGGAGCTTCCCTCTTTGCTGCGGCTGCTGCTTCCTCCAACTCTTCGGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGTAAGCTACTCTTTGCTATCCAGATTATTCATGAACATTCAAATTGCTTTTATCATTTAGTTTTAGATCCTGTTTCGGTCTATGAACTCTATTCCAGCTAATATACTTTCAAATGCTATGTTTGGATTCTTTGTCTTTGCATATTAATGAGTCTTGTTCTTGATTCCTTGACTTAGCTCAAAAGTGTGTTTGGTTCTTGTTCTTGCTAAACTTCCATGGTACACGTAATATTTTAAGCCTATCGCTAGTAGATAATTGTCCTCTTTGGGCTTTTCCCTTCGATCTTTCCCTCAAGATTTTTAAAACGTGTCTGATAGGAAGAGGTTTCTACACCCTTTATAAAGAATGCTTCGTTCTCCTCTCCAACCGACGTGAGATGTCACGTACATTTCAAAAGTGAATGAAACAGAATTTAGTCAATTGGATGGTAAACCGATCATGTTCTTAACTCTGTTATTGCAACAGGAGCTGAATGACAAGAAAAGATTAGCAACAAGTGGAGCAAACTTTGCAAGGGCATACACTGTTCAGTTTGGATCATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAACAAAAGGTATGAACATTCATTGCTTAGTTATAATCAGCGTTGGCTGTGAAATTTTGAGTACAAGTAAATGTGTTTATGTTAAGCACTAAGTTAGTTCTCTGTCCTGCTTTTGATGAATGCAGAAAGTCCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGAACAGAACAATTTATTGAAGTCTTTGTATCTAATTTTCAACTTTTAAGAAGTGTGAAATTTTATTTAGTCCAATTCCATTGCTTTCTTTCTTCTCTTTCAGACCAAAAGAAGCCAAATGAGAAAGTAGAAACCCTAGAAATCTATTGCTTTAGCTTTGTTAATGTTAATAATGTTCGGGAAGGTAACTAAAAGATATATTTAATAGTCCATTTGAGCCTAATTCAAT ATGGCGACCATGAATTCCAGCGTCTTGGCCTGCAACTACGCCATTTCAGGTGCTGGATCCGCCGAGCTTAACTCGAAACTCAGCGCCGTGACTTCTGTTGCGTCGCCTGGGGTTTCTGGTTACAAGTTGCCTGCGATTAGGGCTCGACAGGCTAGGGTTCCTGAAGCTAAGAATGAAGGAAGGAGAACTGCGCTTCTCTTCCTTGGAGCTTCCCTCTTTGCTGCGGCTGCTGCTTCCTCCAACTCTTCGGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGAGCTGAATGACAAGAAAAGATTAGCAACAAGTGGAGCAAACTTTGCAAGGGCATACACTGTTCAGTTTGGATCATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAACAAAAGAAAGTCCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGAACAGAACAATTTATTGAAGTCTTTGTATCTAATTTTCAACTTTTAAGAAGTGTGAAATTTTATTTAGTCCAATTCCATTGCTTTCTTTCTTCTCTTTCAGACCAAAAGAAGCCAAATGAGAAAGTAGAAACCCTAGAAATCTATTGCTTTAGCTTTGTTAATGTTAATAATGTTCGGGAAGGTAACTAAAAGATATATTTAATAGTCCATTTGAGCCTAATTCAAT ATGGCGACCATGAATTCCAGCGTCTTGGCCTGCAACTACGCCATTTCAGGTGCTGGATCCGCCGAGCTTAACTCGAAACTCAGCGCCGTGACTTCTGTTGCGTCGCCTGGGGTTTCTGGTTACAAGTTGCCTGCGATTAGGGCTCGACAGGCTAGGGTTCCTGAAGCTAAGAATGAAGGAAGGAGAACTGCGCTTCTCTTCCTTGGAGCTTCCCTCTTTGCTGCGGCTGCTGCTTCCTCCAACTCTTCGGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGAGCTGAATGACAAGAAAAGATTAGCAACAAGTGGAGCAAACTTTGCAAGGGCATACACTGTTCAGTTTGGATCATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAACAAAAGAAAGTCCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA
BLAST of CmoCh07G008310 vs. Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2) HSP 1 Score: 224.6 bits (571), Expect = 8.5e-58 Identity = 119/173 (68.79%), Postives = 140/173 (80.92%), Query Frame = 1
BLAST of CmoCh07G008310 vs. Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 4.8e-45 Identity = 95/124 (76.61%), Postives = 105/124 (84.68%), Query Frame = 1
BLAST of CmoCh07G008310 vs. Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=2 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.5e-41 Identity = 78/93 (83.87%), Postives = 87/93 (93.55%), Query Frame = 1
BLAST of CmoCh07G008310 vs. Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 4.7e-24 Identity = 69/122 (56.56%), Postives = 84/122 (68.85%), Query Frame = 1
BLAST of CmoCh07G008310 vs. TrEMBL
Match: A0A0A0KFM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1) HSP 1 Score: 309.3 bits (791), Expect = 2.9e-81 Identity = 156/171 (91.23%), Postives = 167/171 (97.66%), Query Frame = 1
BLAST of CmoCh07G008310 vs. TrEMBL
Match: G7JAX6_MEDTR (Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 PE=2 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 9.7e-69 Identity = 139/175 (79.43%), Postives = 154/175 (88.00%), Query Frame = 1
BLAST of CmoCh07G008310 vs. TrEMBL
Match: F6I0D9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=1) HSP 1 Score: 265.8 bits (678), Expect = 3.7e-68 Identity = 138/175 (78.86%), Postives = 157/175 (89.71%), Query Frame = 1
BLAST of CmoCh07G008310 vs. TrEMBL
Match: W9QUC7_9ROSA (Photosystem I reaction center subunit N OS=Morus notabilis GN=L484_020701 PE=4 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 1.2e-66 Identity = 136/172 (79.07%), Postives = 150/172 (87.21%), Query Frame = 1
BLAST of CmoCh07G008310 vs. TrEMBL
Match: A0A061DJ27_THECC (Photosystem I reaction center subunit PSI OS=Theobroma cacao GN=TCM_001498 PE=4 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 1.6e-66 Identity = 140/176 (79.55%), Postives = 153/176 (86.93%), Query Frame = 1
BLAST of CmoCh07G008310 vs. TAIR10
Match: AT5G64040.2 (AT5G64040.2 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)) HSP 1 Score: 162.9 bits (411), Expect = 1.7e-40 Identity = 93/144 (64.58%), Postives = 112/144 (77.78%), Query Frame = 1
BLAST of CmoCh07G008310 vs. NCBI nr
Match: gi|659080932|ref|XP_008441057.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]) HSP 1 Score: 313.5 bits (802), Expect = 2.2e-82 Identity = 159/171 (92.98%), Postives = 169/171 (98.83%), Query Frame = 1
BLAST of CmoCh07G008310 vs. NCBI nr
Match: gi|449461859|ref|XP_004148659.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativus]) HSP 1 Score: 309.3 bits (791), Expect = 4.2e-81 Identity = 156/171 (91.23%), Postives = 167/171 (97.66%), Query Frame = 1
BLAST of CmoCh07G008310 vs. NCBI nr
Match: gi|357464531|ref|XP_003602547.1| (photosystem I reaction center subunit N [Medicago truncatula]) HSP 1 Score: 267.7 bits (683), Expect = 1.4e-68 Identity = 139/175 (79.43%), Postives = 154/175 (88.00%), Query Frame = 1
BLAST of CmoCh07G008310 vs. NCBI nr
Match: gi|359476926|ref|XP_003631913.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifera]) HSP 1 Score: 265.8 bits (678), Expect = 5.3e-68 Identity = 138/175 (78.86%), Postives = 157/175 (89.71%), Query Frame = 1
BLAST of CmoCh07G008310 vs. NCBI nr
Match: gi|743861697|ref|XP_011031185.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Populus euphratica]) HSP 1 Score: 262.3 bits (669), Expect = 5.9e-67 Identity = 138/174 (79.31%), Postives = 154/174 (88.51%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: None |