Cucsa.100880 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCCCATTAACAACAACTGACCGCCATTAATTCCATCTCCAACTTTGTCCAATCACTTCCAAACCAATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTATGCCATTTCCGGCGCTGGATCGGCTGACCTCAACTCTAAACTCACCGCCGCCCCTTCTGTTGCGTCTCCTGGGGTTGTGGGTTACAAGTTGCCGGCTATTAGAGCTCAACAGaCTAAGGTTCCTGAAGCTAAGAACGATGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCTCCCTCTTTGCTGCGGCTGCGGCTGCCTCTAACTCCTCTGCTAATGCTGGAGTCATTGAAGATTATCTTGAGAAGAGTAAAGCTAACAAGGTGAACTACCTATTCATATTGCCTTTGTCAAATGCTGTGTTTCAATACTTTGATGAAAATGTGTTTGATCTCTGTTGGTGTTGAATTTTCAAAGTATGTGAAATCAAAATATTATTTTGGATTTGTATCTTAAACTAGAAGTATCTATAAGGTATGCTGAGGATTAAAACTAGGAGTTTAAGTCTTTAAGATTCATGTTGAATGTCATGCTGAAATTTGAAGCTATGGACTAATGTTTTAAAAAGCCCTCCCATGATCAAGGCCAAAAGCCTTGAGTTTTCTTAGAAGACTATTGCACTATATCGTGCCTTGAACTTTTTAAAACACTACAATGGACTAACATAAACGTATAAAACAAGATTTATATGAAAAGTTTTTCATGTTTCTAAACCTTTTATTGCGATTTTCAACAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGAGCAAACTTCGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCCAAACAAAAGGTTTGGACATAGTTTTAGTTGTAATCATTATCAGTTTTTTGAATTGTTGACAATATGAGATGGGTTTTTGTTTTGCTGAGTGCTAAGTTAGTTTTATGTTCTGTTTTTGATTGATGCAGAAAGTTCCATTTATAACTGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGgAGAGAACCATTTTTAAGTCTTTGTACCCATTACTCACTTCTCCCCTTGTATCTAATTTTCAACTATTGAAAAGTGTGAAATTTTATTGTTTGCCTTTTTTGGGGACATGTGTTCCAATTCCATTGTTTTCTCTTCTCTATTTGAGACCAAAAGAAGCAAAATGTGAAAGTAGAAACCCTAGACATCTATGGCCTTAACATTTGTTAGAATTCTTCCTCAATAAACATCATTATATGCATTTAATTAGGCCTAA CCCCCATTAACAACAACTGACCGCCATTAATTCCATCTCCAACTTTGTCCAATCACTTCCAAACCAATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTATGCCATTTCCGGCGCTGGATCGGCTGACCTCAACTCTAAACTCACCGCCGCCCCTTCTGTTGCGTCTCCTGGGGTTGTGGGTTACAAGTTGCCGGCTATTAGAGCTCAACAGACTAAGGTTCCTGAAGCTAAGAACGATGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCTCCCTCTTTGCTGCGGCTGCGGCTGCCTCTAACTCCTCTGCTAATGCTGGAGTCATTGAAGATTATCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGAGCAAACTTCGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCCAAACAAAAGAAAGTTCCATTTATAACTGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGGAGAGAACCATTTTTAAGTCTTTGTACCCATTACTCACTTCTCCCCTTGTATCTAATTTTCAACTATTGAAAAGTGTGAAATTTTATTGTTTGCCTTTTTTGGGGACATGTGTTCCAATTCCATTGTTTTCTCTTCTCTATTTGAGACCAAAAGAAGCAAAATGTGAAAGTAGAAACCCTAGACATCTATGGCCTTAACATTTGTTAGAATTCTTCCTCAATAAACATCATTATATGCATTTAATTAGGCCTAA ATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTATGCCATTTCCGGCGCTGGATCGGCTGACCTCAACTCTAAACTCACCGCCGCCCCTTCTGTTGCGTCTCCTGGGGTTGTGGGTTACAAGTTGCCGGCTATTAGAGCTCAACAGaCTAAGGTTCCTGAAGCTAAGAACGATGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCTCCCTCTTTGCTGCGGCTGCGGCTGCCTCTAACTCCTCTGCTAATGCTGGAGTCATTGAAGATTATCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGAGCAAACTTCGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCCAAACAAAAGAAAGTTCCATTTATAACTGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW*
BLAST of Cucsa.100880 vs. Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2) HSP 1 Score: 224.9 bits (572), Expect = 6.5e-58 Identity = 112/173 (64.74%), Postives = 140/173 (80.92%), Query Frame = 1
BLAST of Cucsa.100880 vs. Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 9.8e-46 Identity = 97/143 (67.83%), Postives = 109/143 (76.22%), Query Frame = 1
BLAST of Cucsa.100880 vs. Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=2 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 2.5e-41 Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 1
BLAST of Cucsa.100880 vs. Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 3.9e-26 Identity = 71/132 (53.79%), Postives = 85/132 (64.39%), Query Frame = 1
BLAST of Cucsa.100880 vs. TrEMBL
Match: A0A0A0KFM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1) HSP 1 Score: 344.0 bits (881), Expect = 1.1e-91 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1
BLAST of Cucsa.100880 vs. TrEMBL
Match: G7JAX6_MEDTR (Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 PE=2 SV=1) HSP 1 Score: 278.9 bits (712), Expect = 4.3e-72 Identity = 139/175 (79.43%), Postives = 153/175 (87.43%), Query Frame = 1
BLAST of Cucsa.100880 vs. TrEMBL
Match: F6I0D9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=1) HSP 1 Score: 276.2 bits (705), Expect = 2.8e-71 Identity = 136/175 (77.71%), Postives = 155/175 (88.57%), Query Frame = 1
BLAST of Cucsa.100880 vs. TrEMBL
Match: Q84U30_PHAVU (Photosystem I-N subunit OS=Phaseolus vulgaris GN=PSI-N PE=1 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 8.0e-71 Identity = 136/172 (79.07%), Postives = 154/172 (89.53%), Query Frame = 1
BLAST of Cucsa.100880 vs. TrEMBL
Match: A0A0S3QY87_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G076000 PE=4 SV=1) HSP 1 Score: 273.9 bits (699), Expect = 1.4e-70 Identity = 135/172 (78.49%), Postives = 152/172 (88.37%), Query Frame = 1
BLAST of Cucsa.100880 vs. TAIR10
Match: AT5G64040.2 (AT5G64040.2 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)) HSP 1 Score: 165.2 bits (417), Expect = 3.5e-41 Identity = 87/144 (60.42%), Postives = 112/144 (77.78%), Query Frame = 1
BLAST of Cucsa.100880 vs. NCBI nr
Match: gi|449461859|ref|XP_004148659.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativus]) HSP 1 Score: 344.0 bits (881), Expect = 1.5e-91 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1
BLAST of Cucsa.100880 vs. NCBI nr
Match: gi|659080932|ref|XP_008441057.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]) HSP 1 Score: 336.7 bits (862), Expect = 2.5e-89 Identity = 166/171 (97.08%), Postives = 169/171 (98.83%), Query Frame = 1
BLAST of Cucsa.100880 vs. NCBI nr
Match: gi|357464531|ref|XP_003602547.1| (photosystem I reaction center subunit N [Medicago truncatula]) HSP 1 Score: 278.9 bits (712), Expect = 6.1e-72 Identity = 139/175 (79.43%), Postives = 153/175 (87.43%), Query Frame = 1
BLAST of Cucsa.100880 vs. NCBI nr
Match: gi|359476926|ref|XP_003631913.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifera]) HSP 1 Score: 276.2 bits (705), Expect = 4.0e-71 Identity = 136/175 (77.71%), Postives = 155/175 (88.57%), Query Frame = 1
BLAST of Cucsa.100880 vs. NCBI nr
Match: gi|593793544|ref|XP_007159811.1| (hypothetical protein PHAVU_002G269400g [Phaseolus vulgaris]) HSP 1 Score: 274.6 bits (701), Expect = 1.2e-70 Identity = 136/172 (79.07%), Postives = 154/172 (89.53%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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