Cp4.1LG10g03660 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG10g03660
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Photosystem I reaction center subunit N
Location	Cp4.1LG10 : 1941409 .. 1943009 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATGAAATGCAGTTGAAAGGGATTGGAATTATAATTTAGCGGATTTTAAATAATAAAATTCAGTCCGAAGTGGAATTATAAGATGAACTGGAATTTCAAAGTGGGTCCAGAATTGAAGCTTGCCACACACATTTCCATGTCCGAAGCCCTAATCACAGCCATGGTGTTTGCCAATTGGGAGTGAGGAAATCTCACCTTATCCACACTCTTACCACAATCCCTTATCCAATTCCATCTCATAGATCCCTTTCTTTTTCTTTTTTTTCTTTTTTTTATCAGTTTCCCTCGTAATCTCATTACCCCATTAACATCTGACCGCCATTAATTCCAACTTTGATTTCGTCCAAGCAGTTGCAGAGACCTACGCAGCAAGCAATGGCGACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCAGGCGCGAGATCGGCCGACCTGAGCTCTAAAATCAACGCCGCCCCTTCTGTTGCATCTCCTGGGGTTGTGGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAATGACGGAAGGAGGTCTGCGCTTCTGTACCTTGGTGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCTCTGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGTAGCTACCTATTATGCTGACCAAACCATGCATAGCCCTGTTTCGATTCTTTGAGTTAGCTAAAATAATGAAAATGTTTTTGGTTCTTGATTCTTTGACTCTGCACAAAAATGTATATGGTTCTTGTAGTTGCTGGATTTCCATAGTTTATGAAACAGGAGTCCAAGATTTATGCTGAAAGTTGTTCTAACGGCCCAAGTCGATCAACCGATGTTGTTTCTTTAGGATTTTCCTTTTGGACTAATATCAGTTAGCAACGAGCTTAGACTCTCTAACGCTTAAGTTTAAAGCTAAACACAGGAAAGGATCAAAGTAAAGGGGCTGAATTAGGATTCAGCTGCAAATTCTATGATGTTTCTAAGCATATTGTTGCAACAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACCGTTCAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGGTTTGGTTTGGACATTGCTTAGTTTTAATCAGTATTGCCTTTGAAATGCTGATAATATGTGATGAGTTCTTGCTGAGTAGCTAAGTCATTTCTCTGTTCTGTTGTTGATGGCTGCAGAAAGTTCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGGGAAGGCAAGAAACCATTTCAAGTCTTTGTATCTAATTCTCAACTTCTAAATAGTGTGAAATTTTATGCGTTCGATTCGCAAATATAATGTCTTAACTAGCTGAGTGATGTTCAAATTCTAATAACGAGTTAGTTGATCACAAATCGTCACGTTTCTCAAATTCATGAAGAAGTTATTCAATTATTGAATTTGAGATAGATTGCAATTGA

mRNA sequence

GAAAATGAAATGCAGTTGAAAGGGATTGGAATTATAATTTAGCGGATTTTAAATAATAAAATTCAGTCCGAAGTGGAATTATAAGATGAACTGGAATTTCAAAGTGGGTCCAGAATTGAAGCTTGCCACACACATTTCCATGTCCGAAGCCCTAATCACAGCCATGGTGTTTGCCAATTGGGAGTGAGGAAATCTCACCTTATCCACACTCTTACCACAATCCCTTATCCAATTCCATCTCATAGATCCCTTTCTTTTTCTTTTTTTTCTTTTTTTTATCAGTTTCCCTCGTAATCTCATTACCCCATTAACATCTGACCGCCATTAATTCCAACTTTGATTTCGTCCAAGCAGTTGCAGAGACCTACGCAGCAAGCAATGGCGACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCAGGCGCGAGATCGGCCGACCTGAGCTCTAAAATCAACGCCGCCCCTTCTGTTGCATCTCCTGGGGTTGTGGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAATGACGGAAGGAGGTCTGCGCTTCTGTACCTTGGTGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCTCTGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACCGTTCAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGAAAGTTCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGGGAAGGCAAGAAACCATTTCAAGTCTTTGTATCTAATTCTCAACTTCTAAATAGTGTGAAATTTTATGCGTTCGATTCGCAAATATAATGTCTTAACTAGCTGAGTGATGTTCAAATTCTAATAACGAGTTAGTTGATCACAAATCGTCACGTTTCTCAAATTCATGAAGAAGTTATTCAATTATTGAATTTGAGATAGATTGCAATTGA

Coding sequence (CDS)

ATGGCGACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCAGGCGCGAGATCGGCCGACCTGAGCTCTAAAATCAACGCCGCCCCTTCTGTTGCATCTCCTGGGGTTGTGGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAATGACGGAAGGAGGTCTGCGCTTCTGTACCTTGGTGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCTCTGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACCGTTCAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGAAAGTTCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

Protein sequence

MATMNSSVLACNYAISGARSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKNDGRRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

Homology

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BLAST of Cp4.1LG10g03660 vs. Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 218.8 bits (556), Expect = 4.7e-56
Identity = 115/173 (66.47%), Postives = 139/173 (80.35%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGARSADLSSKINAAPSVASPGVVGYKL-PAIRAQQARVPEAK-N 60
           MA MNSSVL C+YAI+G+ S +L+ K+    S    G     + P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  DGRRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARA 120
           +GRRSA+++L ATLF+ AA   ++SANAGVI+EYLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAV--SASANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           +TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LECEGKDKYKCGSNVFWKW
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

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BLAST of Cp4.1LG10g03660 vs. Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 8.2e-45
Identity = 99/143 (69.23%), Postives = 109/143 (76.22%), Query Frame = 1


Query: 29  AAPSVASPGVVGYKLPAIRAQQARVPEAKNDGRRSALLYLGATLFAAAAAASNSSANAGV 88
           A P  ASP           A++ +V  AK+  RRSALL L A    AA AAS  SA A V
Sbjct: 16  AVPQSASPAA---------AKRVQVAPAKD--RRSALLGLAAVF--AATAASAGSARASV 75

Query: 89  IEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFIS 148
            +EYLEKSK NKELNDKKR ATSGANFARAYTVQFG+CKFP NFTGCQDLAKQKKVPFI+
Sbjct: 76  FDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFIT 135

Query: 149 DDLELECEGKDKYKCGSNVFWKW 172
           DDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 136 DDLEIECEGKEKFKCGSNVFWKW 145

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BLAST of Cp4.1LG10g03660 vs. Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.2e-41
Identity = 77/92 (83.70%), Postives = 86/92 (93.48%), Query Frame = 1


Query: 80  SNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLA 139
           +  SA A + +EYLEKSKANKELNDKKRLATSGANFARAYTV+FG+C+FP NFTGCQDLA
Sbjct: 21  TTGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLA 80

Query: 140 KQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           KQKKVPFISDDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 81  KQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112

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BLAST of Cp4.1LG10g03660 vs. Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.6e-25
Identity = 70/132 (53.03%), Postives = 87/132 (65.91%), Query Frame = 1


Query: 45  AIRAQQARVPEAK-----------NDGRRSALLYLGATLFAAAAAASNSSANAGVIEEYL 104
           A+RAQ A+V  A+           +   R  LL LG  L AAA A +   ANAGV+E+ L
Sbjct: 4   AMRAQCAKVQAARPARATTVVCRASAQSRRELLGLGVLLGAAALAPA---ANAGVVEDLL 63

Query: 105 EKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLEL 164
            KS ANK LN+KKRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I++DL++
Sbjct: 64  AKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKI 123

Query: 165 ECEGKDKYKCGS 166
           ECEGKD   CGS
Sbjct: 124 ECEGKDAKSCGS 132

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BLAST of Cp4.1LG10g03660 vs. TrEMBL
Match: A0A0A0KFM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.1e-83
Identity = 160/171 (93.57%), Postives = 168/171 (98.25%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGARSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKNDG 60
           MATMNSSVLACNYAISGA SADL+SK+ AAPSVASPGVVGYKLPAIRAQQ +VPEAKNDG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RR+ALLYLGA+LFAAAAAASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           V+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Cp4.1LG10g03660 vs. TrEMBL
Match: G7JAX6_MEDTR (Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 PE=2 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.2e-69
Identity = 140/175 (80.00%), Postives = 154/175 (88.00%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGARSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA MNSSVLAC+YAISG+   +L++K+ + PS ASPGV G KLP I+AQQ R+PEAK   
Sbjct: 1   MAAMNSSVLACSYAISGS---ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 60

Query: 61  -NDGRRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120
            +DGRR+AL  L ATLF  A +ASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           RAYTVQFGTCKFPENFTGCQDLAKQKKVPFI++DLELECEGKDKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172

[Close]

BLAST of Cp4.1LG10g03660 vs. TrEMBL
Match: F6I0D9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.8e-68
Identity = 137/175 (78.29%), Postives = 156/175 (89.14%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGARSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA++NSSVLACNYAISGA + +L+SK+ + PS ASP V G KLPAIRAQQARV ++K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 61  -NDGRRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120
             +GRR+AL+YL ATLF  AAA  +SSANAGVI++YLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  AGEGRRAALVYLAATLFTTAAA--SSSANAGVIDDYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           RAYTVQFGTCKFPENFTGCQDLAK+KKVPF+S+DLELECEG+DKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRDKYKCGSNVFWKW 173

[Close]

BLAST of Cp4.1LG10g03660 vs. TrEMBL
Match: Q84U30_PHAVU (Photosystem I-N subunit OS=Phaseolus vulgaris GN=PSI-N PE=1 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.8e-68
Identity = 136/172 (79.07%), Postives = 154/172 (89.53%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGARSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKND- 60
           M+ MNS+VLACNYA SG   +DL++K+ + PSVASP +   KLP I+A QA+V E+K+D 
Sbjct: 1   MSAMNSTVLACNYARSGC--SDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVTESKSDQ 60

Query: 61  GRRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAY 120
           GRRSAL+YL ATLF AAAAASNSSANAGVIEEYLEKSK NKELNDKKRLAT+GANFARAY
Sbjct: 61  GRRSALVYLAATLFTAAAAASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFARAY 120

Query: 121 TVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           TV+FG+CKFPENFTGCQDLAKQKKVPF+SDDL+LECEGKDKYKCGSNVFWKW
Sbjct: 121 TVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSNVFWKW 170

[Close]

BLAST of Cp4.1LG10g03660 vs. TrEMBL
Match: A0A0L9TJG3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g016500 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 8.2e-68
Identity = 135/172 (78.49%), Postives = 152/172 (88.37%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGARSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAK-ND 60
           M+ MNSSVLACNYA SG   +DL++K+ + PSVASP     KLP I+A QA+V E++ N 
Sbjct: 1   MSAMNSSVLACNYARSGC--SDLNAKLTSMPSVASPQASALKLPVIKAHQAKVTESESNQ 60

Query: 61  GRRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAY 120
           GRRS+L+YL ATLF AAAAASNSSANAG+IEEYLE+SK NKELNDKKRLAT+GANFARAY
Sbjct: 61  GRRSSLVYLAATLFTAAAAASNSSANAGIIEEYLERSKTNKELNDKKRLATTGANFARAY 120

Query: 121 TVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           TV+FGTCKFPENFTGCQDLAKQKKVPF+SDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFLSDDLELECEGKDKYKCGSNVFWKW 170

[Close]

BLAST of Cp4.1LG10g03660 vs. TAIR10
Match: AT5G64040.2 (AT5G64040.2 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN))

HSP 1 Score: 157.1 bits (396), Expect = 9.4e-39
Identity = 89/144 (61.81%), Postives = 111/144 (77.08%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGARSADLSSKINAAPSVASPGVVGYKL-PAIRAQQARVPEAK-N 60
           MA MNSSVL C+YAI+G+ S +L+ K+    S    G     + P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  DGRRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARA 120
           +GRRSA+++L ATLF+ AA   ++SANAGVI+EYLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAV--SASANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVQFGTCKFPENFTGCQDLAKQK 143
           +TVQFG+CKFPENFTGCQDLAKQK
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQK 142

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BLAST of Cp4.1LG10g03660 vs. NCBI nr
Match: gi|659080932|ref|XP_008441057.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo])

HSP 1 Score: 318.5 bits (815), Expect = 6.9e-84
Identity = 161/171 (94.15%), Postives = 168/171 (98.25%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGARSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKNDG 60
           MATMNSSVLACNYAISGA SADL+SK+ A PSVASPGVVGYKLPAIRAQQARVPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RR+ALLYLGATLFAAAAAASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           V+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Cp4.1LG10g03660 vs. NCBI nr
Match: gi|449461859|ref|XP_004148659.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 1.5e-83
Identity = 160/171 (93.57%), Postives = 168/171 (98.25%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGARSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKNDG 60
           MATMNSSVLACNYAISGA SADL+SK+ AAPSVASPGVVGYKLPAIRAQQ +VPEAKNDG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RR+ALLYLGA+LFAAAAAASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           V+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Cp4.1LG10g03660 vs. NCBI nr
Match: gi|357464531|ref|XP_003602547.1| (photosystem I reaction center subunit N [Medicago truncatula])

HSP 1 Score: 270.8 bits (691), Expect = 1.7e-69
Identity = 140/175 (80.00%), Postives = 154/175 (88.00%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGARSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA MNSSVLAC+YAISG+   +L++K+ + PS ASPGV G KLP I+AQQ R+PEAK   
Sbjct: 1   MAAMNSSVLACSYAISGS---ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 60

Query: 61  -NDGRRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120
            +DGRR+AL  L ATLF  A +ASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           RAYTVQFGTCKFPENFTGCQDLAKQKKVPFI++DLELECEGKDKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172

[Close]

BLAST of Cp4.1LG10g03660 vs. NCBI nr
Match: gi|359476926|ref|XP_003631913.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifera])

HSP 1 Score: 266.2 bits (679), Expect = 4.1e-68
Identity = 137/175 (78.29%), Postives = 156/175 (89.14%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGARSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA++NSSVLACNYAISGA + +L+SK+ + PS ASP V G KLPAIRAQQARV ++K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 61  -NDGRRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120
             +GRR+AL+YL ATLF  AAA  +SSANAGVI++YLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  AGEGRRAALVYLAATLFTTAAA--SSSANAGVIDDYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           RAYTVQFGTCKFPENFTGCQDLAK+KKVPF+S+DLELECEG+DKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRDKYKCGSNVFWKW 173

[Close]

BLAST of Cp4.1LG10g03660 vs. NCBI nr
Match: gi|747103096|ref|XP_011099736.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Sesamum indicum])

HSP 1 Score: 265.4 bits (677), Expect = 6.9e-68
Identity = 138/171 (80.70%), Postives = 151/171 (88.30%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGARSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKNDG 60
           MA MNSSVLACNYAISG    DL+SK+NA PSVA+P     K+P IRAQQ +VP++ + G
Sbjct: 1   MAAMNSSVLACNYAISGT---DLNSKLNALPSVATPVAPVQKMPVIRAQQGKVPDSNDSG 60

Query: 61  RRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RR+ALL LGA LF AA ++S S+ANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRAALLGLGAALFTAAISSS-SAANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 167

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g03660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAN_ARATH	4.7e-56	66.47	Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana G...	[more]
PSAN_HORVU	8.2e-45	69.23	Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSA...	[more]
PSAN_MAIZE	3.2e-41	83.70	Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN...	[more]
PSAN_VOLCA	5.6e-25	53.03	Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN...	[more]

BLAST of Cp4.1LG10g03660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFM1_CUCSA	1.1e-83	93.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1	[more]
G7JAX6_MEDTR	1.2e-69	80.00	Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 P...	[more]
F6I0D9_VITVI	2.8e-68	78.29	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=...	[more]
Q84U30_PHAVU	4.8e-68	79.07	Photosystem I-N subunit OS=Phaseolus vulgaris GN=PSI-N PE=1 SV=1	[more]
A0A0L9TJG3_PHAAN	8.2e-68	78.49	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g016500 PE=4 SV=1	[more]

BLAST of Cp4.1LG10g03660 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64040.2	9.4e-39	61.81	photosystem I reaction center subunit PSI-N, chloroplast, putative /...	[more]

BLAST of Cp4.1LG10g03660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080932\|ref\|XP_008441057.1\|	6.9e-84	94.15	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]	[more]
gi\|449461859\|ref\|XP_004148659.1\|	1.5e-83	93.57	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativ...	[more]
gi\|357464531\|ref\|XP_003602547.1\|	1.7e-69	80.00	photosystem I reaction center subunit N [Medicago truncatula]	[more]
gi\|359476926\|ref\|XP_003631913.1\|	4.1e-68	78.29	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifer...	[more]
gi\|747103096\|ref\|XP_011099736.1\|	6.9e-68	80.70	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Sesamum indic...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I

Vocabulary: **INTERPRO**
Term	Definition
IPR008796	PSAN

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g03660.1	Cp4.1LG10g03660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	GENE3D	G3DSA:4.10.1190.10		coord: 87..171 score: 2.9
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PFAM	PF05479	PsaN	coord: 44..171 score: 7.6
None	No IPR available	PANTHER	PTHR36814	FAMILY NOT NAMED	coord: 2..171 score: 1.2
None	No IPR available	PANTHER	PTHR36814:SF1	PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC	coord: 2..171 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG10g03660	Cucsa.100880	Cucumber (Gy14) v1	cgycpeB0211
Cp4.1LG10g03660	CmaCh03G010990	Cucurbita maxima (Rimu)	cmacpeB656
Cp4.1LG10g03660	CmoCh07G008310	Cucurbita moschata (Rifu)	cmocpeB806
Cp4.1LG10g03660	Cla008429	Watermelon (97103) v1	cpewmB075
Cp4.1LG10g03660	Csa6G483300	Cucumber (Chinese Long) v2	cpecuB085
Cp4.1LG10g03660	MELO3C008060	Melon (DHL92) v3.5.1	cpemeB069
Cp4.1LG10g03660	ClCG01G015380	Watermelon (Charleston Gray)	cpewcgB061
Cp4.1LG10g03660	CSPI06G26390	Wild cucumber (PI 183967)	cpecpiB080
Cp4.1LG10g03660	Lsi01G011580	Bottle gourd (USVL1VR-Ls)	cpelsiB054
Cp4.1LG10g03660	MELO3C008060.2	Melon (DHL92) v3.6.1	cpemedB092
Cp4.1LG10g03660	CsaV3_6G041600	Cucumber (Chinese Long) v3	cpecucB0092
Cp4.1LG10g03660	Bhi03G001038	Wax gourd	cpewgoB0087
Cp4.1LG10g03660	CsGy6G025880	Cucumber (Gy14) v2	cgybcpeB710
Cp4.1LG10g03660	Carg05317	Silver-seed gourd	carcpeB1128

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG10g03660	Cp4.1LG19g12170	Cucurbita pepo (Zucchini)	cpecpeB076

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG10g03660	Cucurbita maxima (Rimu)	cmacpeB866
Cp4.1LG10g03660	Cucurbita moschata (Rifu)	cmocpeB606
Cp4.1LG10g03660	Silver-seed gourd	carcpeB0337