Csa6G483300 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G483300
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Photosystem I reaction center subunit N; contains IPR008796 (Photosystem I PsaN, reaction centre subunit N)
Location	Chr6 : 22167961 .. 22169508 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATTTGAAGCACTCATTCAAGATTTCAGAGTGGGTCCAAAATTGAAGGTCGCCATAGAAATTTCCATGTCCGAAAGCCCTAATCACAGCCATTGTTTGCCAATTGGGAGTGAGGAAATCTCACCTTATCCACACTCTCACCACAATCCCTTATCCATTTCCATCTCAACAAATCTCCTCTTTTATCAGATTCCCTCATAATCTCATTACCCCCCATTAACAACAACTGACCGCCATTAATTCCATCTCCAACTTTGTCCAATCACTTCCAAACCAATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTATGCCATTTCCGGCGCTGGATCGGCTGACCTCAACTCTAAACTCACCGCCGCCCCTTCTGTTGCGTCTCCTGGGGTTGTGGGTTACAAGTTGCCGGCTATTAGAGCTCAACAGACTAAGGTTCCTGAAGCTAAGAACGATGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCTCCCTCTTTGCTGCGGCTGCGGCTGCCTCTAACTCCTCTGCTAATGCTGGAGTCATTGAAGATTATCTTGAGAAGAGTAAAGCTAACAAGGTGAACTACCTATTCATATTGCCTTTGTCAAATGCTGTGTTTCAATACTTTGATGAAAATGTGTTTGATCTCTGTTGGTGTTGAATTTTCAAAGTATGTGAAATCAAAATATTATTTTGGATTTGTATCTTAAACTAGAAGTATCTATAAGGTATGCTGAGGATTAAAACTAGGAGTTTAAGTCTTTAAGATTCATGTTGAATGTCATGCTGAAATTTGAAGCTATGGACTAATGTTTTAAAAAGCCCTCCCATGATCAAGGCCAAAAGCCTTGAGTTTTCTTAGAAGACTATTGCACTATATCGTGCCTTGAACTTTTTAAAACACTACAATGGACTAACATAAACGTATAAAACAAGATTTATATGAAAAGTTTTTCATGTTTCTAAACCTTTTATTGCGATTTTCAACAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGAGCAAACTTCGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCCAAACAAAAGGTTTGGACATAGTTTTAGTTGTAATCATTATCAGTTTTTTGAATTGTTGACAATATGAGATGGGTTTTTGTTTTGCTGAGTGCTAAGTTAGTTTTATGTTCTGTTTTTGATTGATGCAGAAAGTTCCATTTATAACTGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGAAGAGAACCATTTTTAAGTCTTTGTACCCATTACTCACTTCTCCCCTTGTATCTAATTTTCAACTATTGAAAAGTGTGAAATTTTATTGTTTGCCTTTTTTGGGGACATGTGTTCCAATTCCATTGTTTTCTCTTCTCTATTTGAGACCAAAAGAAGCAAAATGTGAAAGTAGAAACCCTAGACATCTATGGCCTTAACATTTGTTAGAATTCTTCCTC

mRNA sequence

ATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTATGCCATTTCCGGCGCTGGATCGGCTGACCTCAACTCTAAACTCACCGCCGCCCCTTCTGTTGCGTCTCCTGGGGTTGTGGGTTACAAGTTGCCGGCTATTAGAGCTCAACAGACTAAGGTTCCTGAAGCTAAGAACGATGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCTCCCTCTTTGCTGCGGCTGCGGCTGCCTCTAACTCCTCTGCTAATGCTGGAGTCATTGAAGATTATCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGAGCAAACTTCGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCCAAACAAAAGAAAGTTCCATTTATAACTGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

Coding sequence (CDS)

ATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTATGCCATTTCCGGCGCTGGATCGGCTGACCTCAACTCTAAACTCACCGCCGCCCCTTCTGTTGCGTCTCCTGGGGTTGTGGGTTACAAGTTGCCGGCTATTAGAGCTCAACAGACTAAGGTTCCTGAAGCTAAGAACGATGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCTCCCTCTTTGCTGCGGCTGCGGCTGCCTCTAACTCCTCTGCTAATGCTGGAGTCATTGAAGATTATCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGAGCAAACTTCGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCCAAACAAAAGAAAGTTCCATTTATAACTGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

Protein sequence

MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW*

Homology

[Close]

BLAST of Csa6G483300 vs. Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 224.9 bits (572), Expect = 6.5e-58
Identity = 112/173 (64.74%), Postives = 138/173 (79.77%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKL-PAIRAQQTKVPEAK-N 60
           MA MNSSVL C+YAI+G+GS +LN K+    S    G     + P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  DGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARA 120
           +GRR+A+++L A+LF+ AA ++  SANAGVI++YLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAVSA--SANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           +TV+FG+CKFPENFTGCQDLAKQKKVPFI++D+ LECEGKDKYKCGSNVFWKW
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Csa6G483300 vs. Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 9.8e-46
Identity = 97/143 (67.83%), Postives = 107/143 (74.83%), Query Frame = 1


Query: 29  AAPSVASPGVVGYKLPAIRAQQTKVPEAKNDGRRTALLYLGASLFAAAAAASNSSANAGV 88
           A P  ASP           A++ +V  AK+  RR+ALL L A    AA AAS  SA A V
Sbjct: 16  AVPQSASPAA---------AKRVQVAPAKD--RRSALLGLAAVF--AATAASAGSARASV 75

Query: 89  IEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFIT 148
            ++YLEKSK NKELNDKKR ATSGANFARAYTV+FG+CKFP NFTGCQDLAKQKKVPFIT
Sbjct: 76  FDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFIT 135

Query: 149 DDLELECEGKDKYKCGSNVFWKW 172
           DDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 136 DDLEIECEGKEKFKCGSNVFWKW 145

[Close]

BLAST of Csa6G483300 vs. Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.5e-41
Identity = 76/92 (82.61%), Postives = 84/92 (91.30%), Query Frame = 1


Query: 80  SNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLA 139
           +  SA A + ++YLEKSKANKELNDKKRLATSGANFARAYTVEFG+C+FP NFTGCQDLA
Sbjct: 21  TTGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLA 80

Query: 140 KQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           KQKKVPFI+DDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 81  KQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112

[Close]

BLAST of Csa6G483300 vs. Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.9e-26
Identity = 71/132 (53.79%), Postives = 83/132 (62.88%), Query Frame = 1


Query: 45  AIRAQQTKVPEAK-----------NDGRRTALLYLGASLFAAAAAASNSSANAGVIEDYL 104
           A+RAQ  KV  A+           +   R  LL LG  L AAA A +   ANAGV+ED L
Sbjct: 4   AMRAQCAKVQAARPARATTVVCRASAQSRRELLGLGVLLGAAALAPA---ANAGVVEDLL 63

Query: 105 EKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLEL 164
            KS ANK LN+KKRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I +DL++
Sbjct: 64  AKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKI 123

Query: 165 ECEGKDKYKCGS 166
           ECEGKD   CGS
Sbjct: 124 ECEGKDAKSCGS 132

[Close]

BLAST of Csa6G483300 vs. TrEMBL
Match: A0A0A0KFM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.1e-91
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60
           MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Csa6G483300 vs. TrEMBL
Match: G7JAX6_MEDTR (Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 4.3e-72
Identity = 139/175 (79.43%), Postives = 153/175 (87.43%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAK--- 60
           MA MNSSVLAC+YAISG+   +LN+KL + PS ASPGV G KLP I+AQQ ++PEAK   
Sbjct: 1   MAAMNSSVLACSYAISGS---ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 60

Query: 61  -NDGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
            +DGRR AL  L A+LF  A +ASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           RAYTV+FGTCKFPENFTGCQDLAKQKKVPFIT+DLELECEGKDKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172

[Close]

BLAST of Csa6G483300 vs. TrEMBL
Match: F6I0D9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.8e-71
Identity = 136/175 (77.71%), Postives = 155/175 (88.57%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAK--- 60
           MA++NSSVLACNYAISGAG+ +LNSKL + PS ASP V G KLPAIRAQQ +V ++K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 61  -NDGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
             +GRR AL+YL A+LF  AAA  +SSANAGVI+DYLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  AGEGRRAALVYLAATLFTTAAA--SSSANAGVIDDYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           RAYTV+FGTCKFPENFTGCQDLAK+KKVPF+++DLELECEG+DKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRDKYKCGSNVFWKW 173

[Close]

BLAST of Csa6G483300 vs. TrEMBL
Match: Q84U30_PHAVU (Photosystem I-N subunit OS=Phaseolus vulgaris GN=PSI-N PE=1 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 8.0e-71
Identity = 136/172 (79.07%), Postives = 154/172 (89.53%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKND- 60
           M+ MNS+VLACNYA SG   +DLN+KLT+ PSVASP +   KLP I+A Q KV E+K+D 
Sbjct: 1   MSAMNSTVLACNYARSGC--SDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVTESKSDQ 60

Query: 61  GRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAY 120
           GRR+AL+YL A+LF AAAAASNSSANAGVIE+YLEKSK NKELNDKKRLAT+GANFARAY
Sbjct: 61  GRRSALVYLAATLFTAAAAASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFARAY 120

Query: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           TVEFG+CKFPENFTGCQDLAKQKKVPF++DDL+LECEGKDKYKCGSNVFWKW
Sbjct: 121 TVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSNVFWKW 170

[Close]

BLAST of Csa6G483300 vs. TrEMBL
Match: A0A0L9TJG3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g016500 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.4e-70
Identity = 135/172 (78.49%), Postives = 152/172 (88.37%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAK-ND 60
           M+ MNSSVLACNYA SG   +DLN+KLT+ PSVASP     KLP I+A Q KV E++ N 
Sbjct: 1   MSAMNSSVLACNYARSGC--SDLNAKLTSMPSVASPQASALKLPVIKAHQAKVTESESNQ 60

Query: 61  GRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAY 120
           GRR++L+YL A+LF AAAAASNSSANAG+IE+YLE+SK NKELNDKKRLAT+GANFARAY
Sbjct: 61  GRRSSLVYLAATLFTAAAAASNSSANAGIIEEYLERSKTNKELNDKKRLATTGANFARAY 120

Query: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           TVEFGTCKFPENFTGCQDLAKQKKVPF++DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFLSDDLELECEGKDKYKCGSNVFWKW 170

[Close]

BLAST of Csa6G483300 vs. TAIR10
Match: AT5G64040.2 (AT5G64040.2 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN))

HSP 1 Score: 165.2 bits (417), Expect = 3.5e-41
Identity = 87/144 (60.42%), Postives = 110/144 (76.39%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKL-PAIRAQQTKVPEAK-N 60
           MA MNSSVL C+YAI+G+GS +LN K+    S    G     + P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  DGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARA 120
           +GRR+A+++L A+LF+ AA ++  SANAGVI++YLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAVSA--SANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVEFGTCKFPENFTGCQDLAKQK 143
           +TV+FG+CKFPENFTGCQDLAKQK
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQK 142

[Close]

BLAST of Csa6G483300 vs. NCBI nr
Match: gi|449461859|ref|XP_004148659.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativus])

HSP 1 Score: 344.0 bits (881), Expect = 1.5e-91
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60
           MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Csa6G483300 vs. NCBI nr
Match: gi|659080932|ref|XP_008441057.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo])

HSP 1 Score: 336.7 bits (862), Expect = 2.5e-89
Identity = 166/171 (97.08%), Postives = 169/171 (98.83%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60
           MATMNSSVLACNYAISGAGSADLNSKLTA PSVASPGVVGYKLPAIRAQQ +VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGA+LFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Csa6G483300 vs. NCBI nr
Match: gi|357464531|ref|XP_003602547.1| (photosystem I reaction center subunit N [Medicago truncatula])

HSP 1 Score: 278.9 bits (712), Expect = 6.1e-72
Identity = 139/175 (79.43%), Postives = 153/175 (87.43%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAK--- 60
           MA MNSSVLAC+YAISG+   +LN+KL + PS ASPGV G KLP I+AQQ ++PEAK   
Sbjct: 1   MAAMNSSVLACSYAISGS---ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 60

Query: 61  -NDGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
            +DGRR AL  L A+LF  A +ASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           RAYTV+FGTCKFPENFTGCQDLAKQKKVPFIT+DLELECEGKDKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172

[Close]

BLAST of Csa6G483300 vs. NCBI nr
Match: gi|359476926|ref|XP_003631913.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifera])

HSP 1 Score: 276.2 bits (705), Expect = 4.0e-71
Identity = 136/175 (77.71%), Postives = 155/175 (88.57%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAK--- 60
           MA++NSSVLACNYAISGAG+ +LNSKL + PS ASP V G KLPAIRAQQ +V ++K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 61  -NDGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
             +GRR AL+YL A+LF  AAA  +SSANAGVI+DYLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  AGEGRRAALVYLAATLFTTAAA--SSSANAGVIDDYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           RAYTV+FGTCKFPENFTGCQDLAK+KKVPF+++DLELECEG+DKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRDKYKCGSNVFWKW 173

[Close]

BLAST of Csa6G483300 vs. NCBI nr
Match: gi|593793544|ref|XP_007159811.1| (hypothetical protein PHAVU_002G269400g [Phaseolus vulgaris])

HSP 1 Score: 274.6 bits (701), Expect = 1.2e-70
Identity = 136/172 (79.07%), Postives = 154/172 (89.53%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKND- 60
           M+ MNS+VLACNYA SG   +DLN+KLT+ PSVASP +   KLP I+A Q KV E+K+D 
Sbjct: 1   MSAMNSTVLACNYARSGC--SDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVTESKSDQ 60

Query: 61  GRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAY 120
           GRR+AL+YL A+LF AAAAASNSSANAGVIE+YLEKSK NKELNDKKRLAT+GANFARAY
Sbjct: 61  GRRSALVYLAATLFTAAAAASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFARAY 120

Query: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 172
           TVEFG+CKFPENFTGCQDLAKQKKVPF++DDL+LECEGKDKYKCGSNVFWKW
Sbjct: 121 TVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSNVFWKW 170

The following BLAST results are available for this feature:

BLAST of Csa6G483300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAN_ARATH	6.5e-58	64.74	Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana G...	[more]
PSAN_HORVU	9.8e-46	67.83	Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSA...	[more]
PSAN_MAIZE	2.5e-41	82.61	Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN...	[more]
PSAN_VOLCA	3.9e-26	53.79	Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN...	[more]

BLAST of Csa6G483300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFM1_CUCSA	1.1e-91	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1	[more]
G7JAX6_MEDTR	4.3e-72	79.43	Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 P...	[more]
F6I0D9_VITVI	2.8e-71	77.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=...	[more]
Q84U30_PHAVU	8.0e-71	79.07	Photosystem I-N subunit OS=Phaseolus vulgaris GN=PSI-N PE=1 SV=1	[more]
A0A0L9TJG3_PHAAN	1.4e-70	78.49	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g016500 PE=4 SV=1	[more]

BLAST of Csa6G483300 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64040.2	3.5e-41	60.42	photosystem I reaction center subunit PSI-N, chloroplast, putative /...	[more]

BLAST of Csa6G483300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461859\|ref\|XP_004148659.1\|	1.5e-91	100.00	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativ...	[more]
gi\|659080932\|ref\|XP_008441057.1\|	2.5e-89	97.08	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]	[more]
gi\|357464531\|ref\|XP_003602547.1\|	6.1e-72	79.43	photosystem I reaction center subunit N [Medicago truncatula]	[more]
gi\|359476926\|ref\|XP_003631913.1\|	4.0e-71	77.71	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifer...	[more]
gi\|593793544\|ref\|XP_007159811.1\|	1.2e-70	79.07	hypothetical protein PHAVU_002G269400g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008796	PSAN

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU107453	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G483300.1	Csa6G483300.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU107453	CU107453	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	GENE3D	G3DSA:4.10.1190.10		coord: 87..171 score: 1.0
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PFAM	PF05479	PsaN	coord: 44..171 score: 4.1
None	No IPR available	PANTHER	PTHR36814	FAMILY NOT NAMED	coord: 2..171 score: 6.6
None	No IPR available	PANTHER	PTHR36814:SF1	PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC	coord: 2..171 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G483300	Cla008429	Watermelon (97103) v1	cuwmB502
Csa6G483300	MELO3C008060	Melon (DHL92) v3.5.1	cumeB508
Csa6G483300	ClCG01G015380	Watermelon (Charleston Gray)	cuwcgB432
Csa6G483300	Lsi01G011580	Bottle gourd (USVL1VR-Ls)	culsiB434
Csa6G483300	MELO3C008060.2	Melon (DHL92) v3.6.1	cumedB487
Csa6G483300	Cla97C01G014340	Watermelon (97103) v2	cuwmbB412
Csa6G483300	Bhi03G001038	Wax gourd	cuwgoB622
Csa6G483300	CSPI06G26390	Wild cucumber (PI 183967)	cpicuB313
Csa6G483300	Cucsa.100880	Cucumber (Gy14) v1	cgycuB121
Csa6G483300	CmaCh03G010990	Cucurbita maxima (Rimu)	cmacuB681
Csa6G483300	CmoCh07G008310	Cucurbita moschata (Rifu)	cmocuB865
Csa6G483300	Cp4.1LG19g12170	Cucurbita pepo (Zucchini)	cpecuB503
Csa6G483300	Cp4.1LG10g03660	Cucurbita pepo (Zucchini)	cpecuB085
Csa6G483300	CsGy6G025880	Cucumber (Gy14) v2	cgybcuB281
Csa6G483300	Carg05317	Silver-seed gourd	carcuB0826

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G483300	Cucurbita maxima (Rimu)	cmacuB877
Csa6G483300	Cucurbita moschata (Rifu)	cmocuB670
Csa6G483300	Silver-seed gourd	carcuB0267