CU107453 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU107453
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Photosystem I reaction center subunit N
Location	Chr6 : 22168170 .. 22169529 (+)
Sequence length	829

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACCCCCCATTAACAACAACTGACCGCCATTAATTCCATCTCCAACTTTGTCCAATCACTTCCAAACCAATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTATGCCATTTCCGGCGCTGGATCGGCTGACCTCAACTCTAAACTCACCGCCGCCCCTTCTGTTGCGTCTCCTGGGGTTGTGGGTTACAAGTTGCCGGCTATTAGAGCTCAACAGACTAAGGTTCCTGAAGCTAAGAACGATGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCTCCCTCTTTGCTGCGGCTGCGGCTGCCTCTAACTCCTCTGCTAATGCTGGAGTCATTGAAGATTATCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGAGCAAACTTCGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCCAAACAAAAGAAAGTTCCATTTATAACTGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGAAGAGAACCATTTTTAAGTCTTTGTACCCATTACTCACTTCTCCCCTTGTATCTAATTTTCAACTATTGAAAAGTGTGAAATTTTATTGTTTGCCTTTTTTGGGGACATGTGTTCCAATTCCATTGTTTTCTCTTCTCTATTTGAGACCAAAAGAAGCAAAATGTGAAAGTAGAAACCCTAGACATCTATGGCCTTAACATTTGTTAGAATTCTTCCTCAATAAACATCATTATATGCAAC

Library


Library category	ESTs
Cucumber fruit library	1
fruit (8DPP) library	17
gynoecious flower library	13
hermaphrodite flower library	10
Cucumber leaf library	2
Cucumber male flower buds	1

Homology

[Close]

BLAST of CU107453 vs. Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 9.8e-48
Identity = 100/173 (57.80%), Postives = 119/173 (68.79%), Query Frame = 3


Query: 69  MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKL-PAIRAQQTKVPEAK-N 128
           MA MNSSVL C+YAI+G+GS +LN K+    S    G     + P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 129 DGRRTXXXXXXXXXXXXXXXXXXXXXXXXVIEDYLEKSKANKELNDKKRLATSGANFARA 188
           +GRR+                        VI++YLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAVSASANAG--VIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 189 YTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 248
           +TV+FG+CKFPENFTGCQDLAKQKKVPFI++D+ LECEGKDKYKCGSNVFWKW
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

Query: 249  308
           
Sbjct: 181  171

Query: 309  368
           
Sbjct: 241  171

Query: 369  428
           
Sbjct: 301  171

Query: 429  488
           
Sbjct: 361  171

Query: 489  548
           
Sbjct: 421  171

Query: 549  582
           
Sbjct: 481  171

[Close]

BLAST of CU107453 vs. Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 7.5e-40
Identity = 73/84 (86.90%), Postives = 80/84 (95.24%), Query Frame = 3


Query: 330 VIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFI 389
           + ++YLEKSKANKELNDKKRLATSGANFARAYTVEFG+C+FP NFTGCQDLAKQKKVPFI
Sbjct: 29  IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFI 88

Query: 390 TDDLELECEGKDKYKCGSNVFWKW 449
           +DDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 89  SDDLEIECEGKEKFKCGSNVFWKW 112

Query: 450  509
           
Sbjct: 149  112

Query: 510  569
           
Sbjct: 209  112

Query: 570  582
           
Sbjct: 269  112

[Close]

BLAST of CU107453 vs. Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.2e-39
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 3


Query: 330 VIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFI 389
           V ++YLEKSK NKELNDKKR ATSGANFARAYTV+FG+CKFP NFTGCQDLAKQKKVPFI
Sbjct: 62  VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFI 121

Query: 390 TDDLELECEGKDKYKCGSNVFWKW 449
           TDDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 122 TDDLEIECEGKEKFKCGSNVFWKW 145

Query: 450  509
           
Sbjct: 182  145

Query: 510  569
           
Sbjct: 242  145

Query: 570  582
           
Sbjct: 302  145

[Close]

BLAST of CU107453 vs. Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.5e-21
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 3


Query: 330 VIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFI 389
           V+ED L KS ANK LN+KKRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I
Sbjct: 55  VVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYI 114

Query: 390 TDDLELECEGKDKYKCGS 449
            +DL++ECEGKD   CGS
Sbjct: 115 AEDLKIECEGKDAKSCGS 132

Query: 450  509
           
Sbjct: 175  132

Query: 510  564
           
Sbjct: 235  132

[Close]

BLAST of CU107453 vs. TrEMBL
Match: A0A0A0KFM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 4.5e-76
Identity = 147/171 (85.96%), Postives = 147/171 (85.96%), Query Frame = 3


Query: 69  MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 128
           MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 129 RRTXXXXXXXXXXXXXXXXXXXXXXXXVIEDYLEKSKANKELNDKKRLATSGANFARAYT 188
           RRT                        VIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 189 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 248
           VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

Query: 249  308
           
Sbjct: 181  171

Query: 309  368
           
Sbjct: 241  171

Query: 369  428
           
Sbjct: 301  171

Query: 429  488
           
Sbjct: 361  171

Query: 489  548
           
Sbjct: 421  171

Query: 549  582
           
Sbjct: 481  171

[Close]

BLAST of CU107453 vs. TrEMBL
Match: G7JAX6_MEDTR (Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 9.2e-61
Identity = 123/175 (70.29%), Postives = 135/175 (77.14%), Query Frame = 3


Query: 69  MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAK--- 128
           MA MNSSVLAC+YAISG+   +LN+KL + PS ASPGV G KLP I+AQQ ++PEAK   
Sbjct: 1   MAAMNSSVLACSYAISGS---ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 60

Query: 129 -NDGRRTXXXXXXXXXXXXXXXXXXXXXXXXVIEDYLEKSKANKELNDKKRLATSGANFA 188
            +DGRR                         VIE+YLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120

Query: 189 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 248
           RAYTV+FGTCKFPENFTGCQDLAKQKKVPFIT+DLELECEGKDKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172

Query: 249  308
           
Sbjct: 181  172

Query: 309  368
           
Sbjct: 241  172

Query: 369  428
           
Sbjct: 301  172

Query: 429  488
           
Sbjct: 361  172

Query: 489  548
           
Sbjct: 421  172

Query: 549  582
           
Sbjct: 481  172

[Close]

BLAST of CU107453 vs. TrEMBL
Match: F6I0D9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.0e-59
Identity = 120/175 (68.57%), Postives = 136/175 (77.71%), Query Frame = 3


Query: 69  MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKN-- 128
           MA++NSSVLACNYAISGAG+ +LNSKL + PS ASP V G KLPAIRAQQ +V ++K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 129 --DGRRTXXXXXXXXXXXXXXXXXXXXXXXXVIEDYLEKSKANKELNDKKRLATSGANFA 188
             +GRR                         VI+DYLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  AGEGRRAALVYLAATLFTTAAASSSANAG--VIDDYLEKSKANKELNDKKRLATSGANFA 120

Query: 189 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 248
           RAYTV+FGTCKFPENFTGCQDLAK+KKVPF+++DLELECEG+DKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRDKYKCGSNVFWKW 173

Query: 249  308
           
Sbjct: 181  173

Query: 309  368
           
Sbjct: 241  173

Query: 369  428
           
Sbjct: 301  173

Query: 429  488
           
Sbjct: 361  173

Query: 489  548
           
Sbjct: 421  173

Query: 549  582
           
Sbjct: 481  173

[Close]

BLAST of CU107453 vs. TrEMBL
Match: A0A059AJL5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00200 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 8.6e-59
Identity = 122/171 (71.35%), Postives = 129/171 (75.44%), Query Frame = 3


Query: 69  MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 128
           MATMNSSVLAC YAISG GS++L+SKL    SVA PGV G KLP IRAQQ +VPE+K   
Sbjct: 1   MATMNSSVLACKYAISGTGSSELSSKLG---SVAIPGVPGQKLPMIRAQQVRVPESKAAE 60

Query: 129 RRTXXXXXXXXXXXXXXXXXXXXXXXXVIEDYLEKSKANKELNDKKRLATSGANFARAYT 188
            R                         VIE+YLEKSK NKELNDKKRLATSGANFARAYT
Sbjct: 61  GRRAALACLAATVFATAVASTSSADAGVIEEYLEKSKVNKELNDKKRLATSGANFARAYT 120

Query: 189 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 248
           VEFGTCKFPENFTGCQDLAKQKKVPFI+DDL LECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 168

Query: 249  308
           
Sbjct: 181  168

Query: 309  368
           
Sbjct: 241  168

Query: 369  428
           
Sbjct: 301  168

Query: 429  488
           
Sbjct: 361  168

Query: 489  548
           
Sbjct: 421  168

Query: 549  582
           
Sbjct: 481  168

[Close]

BLAST of CU107453 vs. TrEMBL
Match: A0A0B0PER3_GOSAR (Photosystem I reaction center subunit N, chloroplastic-like protein OS=Gossypium arboreum GN=F383_03089 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.5e-58
Identity = 122/176 (69.32%), Postives = 136/176 (77.27%), Query Frame = 3


Query: 69  MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVG-YKLPAIRAQQTKVPEAK-- 128
           MA MNSSVLACNYAISG GS++LN+KL +APSVASP + G  KLP IRAQQTK  ++K  
Sbjct: 1   MAAMNSSVLACNYAISGTGSSELNAKLASAPSVASPVMCGGRKLPVIRAQQTKFSDSKGS 60

Query: 129 --NDGRRTXXXXXXXXXXXXXXXXXXXXXXXXVIEDYLEKSKANKELNDKKRLATSGANF 188
             ++GRR                         VI++YLEKSKANKELNDKKRLATSGANF
Sbjct: 61  GASEGRRAAVLYLAAGLFTTAVASSANAG---VIDEYLEKSKANKELNDKKRLATSGANF 120

Query: 189 ARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 248
           +RAYTV+FGTCKFPENFTGCQDLAKQKKVPFI+DDL LECEGKDKYKCGSNVFWKW
Sbjct: 121 SRAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 173

Query: 249  308
           
Sbjct: 181  173

Query: 309  368
           
Sbjct: 241  173

Query: 369  428
           
Sbjct: 301  173

Query: 429  488
           
Sbjct: 361  173

Query: 489  548
           
Sbjct: 421  173

Query: 549  582
           
Sbjct: 481  173

[Close]

BLAST of CU107453 vs. NCBI nr
Match: gi|449461859|ref|XP_004148659.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 3.2e-75
Identity = 147/171 (85.96%), Postives = 147/171 (85.96%), Query Frame = 3


Query: 69  MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 128
           MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 129 RRTXXXXXXXXXXXXXXXXXXXXXXXXVIEDYLEKSKANKELNDKKRLATSGANFARAYT 188
           RRT                        VIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 189 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 248
           VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

Query: 249  308
           
Sbjct: 181  171

Query: 309  368
           
Sbjct: 241  171

Query: 369  428
           
Sbjct: 301  171

Query: 429  488
           
Sbjct: 361  171

Query: 489  548
           
Sbjct: 421  171

Query: 549  582
           
Sbjct: 481  171

[Close]

BLAST of CU107453 vs. NCBI nr
Match: gi|659080932|ref|XP_008441057.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo])

HSP 1 Score: 284.3 bits (726), Expect = 2.3e-73
Identity = 143/171 (83.63%), Postives = 145/171 (84.80%), Query Frame = 3


Query: 69  MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 128
           MATMNSSVLACNYAISGAGSADLNSKLTA PSVASPGVVGYKLPAIRAQQ +VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 129 RRTXXXXXXXXXXXXXXXXXXXXXXXXVIEDYLEKSKANKELNDKKRLATSGANFARAYT 188
           RRT                        VIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 189 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 248
           VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

Query: 249  308
           
Sbjct: 181  171

Query: 309  368
           
Sbjct: 241  171

Query: 369  428
           
Sbjct: 301  171

Query: 429  488
           
Sbjct: 361  171

Query: 489  548
           
Sbjct: 421  171

Query: 549  582
           
Sbjct: 481  171

[Close]

BLAST of CU107453 vs. NCBI nr
Match: gi|357464531|ref|XP_003602547.1| (photosystem I reaction center subunit N [Medicago truncatula])

HSP 1 Score: 240.4 bits (612), Expect = 3.8e-60
Identity = 123/175 (70.29%), Postives = 135/175 (77.14%), Query Frame = 3


Query: 69  MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAK--- 128
           MA MNSSVLAC+YAISG+   +LN+KL + PS ASPGV G KLP I+AQQ ++PEAK   
Sbjct: 1   MAAMNSSVLACSYAISGS---ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 60

Query: 129 -NDGRRTXXXXXXXXXXXXXXXXXXXXXXXXVIEDYLEKSKANKELNDKKRLATSGANFA 188
            +DGRR                         VIE+YLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120

Query: 189 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 248
           RAYTV+FGTCKFPENFTGCQDLAKQKKVPFIT+DLELECEGKDKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172

Query: 249  308
           
Sbjct: 181  172

Query: 309  368
           
Sbjct: 241  172

Query: 369  428
           
Sbjct: 301  172

Query: 429  488
           
Sbjct: 361  172

Query: 489  548
           
Sbjct: 421  172

Query: 549  582
           
Sbjct: 481  172

[Close]

BLAST of CU107453 vs. NCBI nr
Match: gi|359476926|ref|XP_003631913.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifera])

HSP 1 Score: 236.1 bits (601), Expect = 7.3e-59
Identity = 120/175 (68.57%), Postives = 136/175 (77.71%), Query Frame = 3


Query: 69  MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKN-- 128
           MA++NSSVLACNYAISGAG+ +LNSKL + PS ASP V G KLPAIRAQQ +V ++K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 129 --DGRRTXXXXXXXXXXXXXXXXXXXXXXXXVIEDYLEKSKANKELNDKKRLATSGANFA 188
             +GRR                         VI+DYLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  AGEGRRAALVYLAATLFTTAAASSSANAG--VIDDYLEKSKANKELNDKKRLATSGANFA 120

Query: 189 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 248
           RAYTV+FGTCKFPENFTGCQDLAK+KKVPF+++DLELECEG+DKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRDKYKCGSNVFWKW 173

Query: 249  308
           
Sbjct: 181  173

Query: 309  368
           
Sbjct: 241  173

Query: 369  428
           
Sbjct: 301  173

Query: 429  488
           
Sbjct: 361  173

Query: 489  548
           
Sbjct: 421  173

Query: 549  582
           
Sbjct: 481  173

[Close]

BLAST of CU107453 vs. NCBI nr
Match: gi|747103096|ref|XP_011099736.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Sesamum indicum])

HSP 1 Score: 235.7 bits (600), Expect = 9.5e-59
Identity = 123/171 (71.93%), Postives = 130/171 (76.02%), Query Frame = 3


Query: 69  MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 128
           MA MNSSVLACNYAISG    DLNSKL A PSVA+P     K+P IRAQQ KVP++ + G
Sbjct: 1   MAAMNSSVLACNYAISGT---DLNSKLNALPSVATPVAPVQKMPVIRAQQGKVPDSNDSG 60

Query: 129 RRTXXXXXXXXXXXXXXXXXXXXXXXXVIEDYLEKSKANKELNDKKRLATSGANFARAYT 188
           RR                         VIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRAALLGLGAALFTAAISSSSAANAG-VIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 189 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 248
           V+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 167

Query: 249  308
           
Sbjct: 181  167

Query: 309  368
           
Sbjct: 241  167

Query: 369  428
           
Sbjct: 301  167

Query: 429  488
           
Sbjct: 361  167

Query: 489  548
           
Sbjct: 421  167

Query: 549  582
           
Sbjct: 481  167

The following BLAST results are available for this feature:

BLAST of CU107453 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAN_ARATH	9.8e-48	57.80	Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana G...	[more]
PSAN_MAIZE	7.5e-40	86.90	Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN...	[more]
PSAN_HORVU	2.2e-39	86.90	Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSA...	[more]
PSAN_VOLCA	3.5e-21	64.10	Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN...	[more]

BLAST of CU107453 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFM1_CUCSA	4.5e-76	85.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1	[more]
G7JAX6_MEDTR	9.2e-61	70.29	Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 P...	[more]
F6I0D9_VITVI	1.0e-59	68.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=...	[more]
A0A059AJL5_EUCGR	8.6e-59	71.35	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00200 PE=4 SV=1	[more]
A0A0B0PER3_GOSAR	1.5e-58	69.32	Photosystem I reaction center subunit N, chloroplastic-like protein OS=Gossypium...	[more]

BLAST of CU107453 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461859\|ref\|XP_004148659.1\|	3.2e-75	85.96	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativ...	[more]
gi\|659080932\|ref\|XP_008441057.1\|	2.3e-73	83.63	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]	[more]
gi\|357464531\|ref\|XP_003602547.1\|	3.8e-60	70.29	photosystem I reaction center subunit N [Medicago truncatula]	[more]
gi\|359476926\|ref\|XP_003631913.1\|	7.3e-59	68.57	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifer...	[more]
gi\|747103096\|ref\|XP_011099736.1\|	9.5e-59	71.93	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Sesamum indic...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR008796	PSAN

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009522	photosystem I

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G483300	Csa6G483300	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
Cuc3_1_D06	Cuc3_1_D06	EST
FKNP3UI02KH9T7	FKNP3UI02KH9T7	EST
FKNP3UI02KHXAN	FKNP3UI02KHXAN	EST
FKNP3UI02KO4HA	FKNP3UI02KO4HA	EST
FKNP3UI02KXOFG	FKNP3UI02KXOFG	EST
FKNP3UI02LA5Y9	FKNP3UI02LA5Y9	EST
FKNP3UI02LOIHC	FKNP3UI02LOIHC	EST
FKNP3UI02LUM4Y	FKNP3UI02LUM4Y	EST
FKNP3UI02MJ8JA	FKNP3UI02MJ8JA	EST
FKNP3UI02MN6AB	FKNP3UI02MN6AB	EST
FKNP3UI02MO9P9	FKNP3UI02MO9P9	EST
FKNP3UI02MVL93	FKNP3UI02MVL93	EST
FKNP3UI02MY0W9	FKNP3UI02MY0W9	EST
FKNP3UI02ND2C5	FKNP3UI02ND2C5	EST
FKNP3UI02NHHZR	FKNP3UI02NHHZR	EST
FKNP3UI02NI1T6	FKNP3UI02NI1T6	EST
FKNP3UI02NVQH4	FKNP3UI02NVQH4	EST
FKNP3UI02OV482	FKNP3UI02OV482	EST
G0009340	G0009340	EST
G0010202	G0010202	EST
G0035954	G0035954	EST
G0049238	G0049238	EST
G0070746	G0070746	EST
G0084686	G0084686	EST
G0103597	G0103597	EST
G0113523	G0113523	EST
G0156353	G0156353	EST
G0160520	G0160520	EST
G0160719	G0160719	EST
G0171455	G0171455	EST
G0197664	G0197664	EST
H0044111	H0044111	EST
H0052428	H0052428	EST
H0054671	H0054671	EST
H0070328	H0070328	EST
H0070571	H0070571	EST
H0094834	H0094834	EST
H0154504	H0154504	EST
H0179463	H0179463	EST
H0181164	H0181164	EST
H0190158	H0190158	EST
RG11_H03	RG11_H03	EST
RG8_B06	RG8_B06	EST
csa02-3ms3-g10	csa02-3ms3-g10	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	GENE3D	G3DSA:4.10.1190.10		coord: 87..171 score: 1.0
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PFAM	PF05479	PsaN	coord: 44..171 score: 4.1
None	No IPR available	PANTHER	PTHR36814	FAMILY NOT NAMED	coord: 2..171 score: 6.6
None	No IPR available	PANTHER	PTHR36814:SF1	PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC	coord: 2..171 score: 6.6