MELO3C008060 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008060
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Photosystem I reaction center subunit N
Location	chr8 : 7307763 .. 7309584 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGAGTGAGGAAATCTCACCTTATCCACACTCTCACCACAATCCCTTATCCATTTCCATCTCAACAAATCTCCTCTTTTATCAGATTCCCTCGTAATCTCGTTACCCCCCATTAACAACAACTGACCGCCATTAATTCCATTTCCAACTTTGTCCAATCACTTCCAAACCAATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGCGCTGGATCGGCCGACCTGAACTCTAAACTCACCGCCGTCCCTTCTGTTGCGTCCCCTGGGGTTGTGGGTTACAAGTTGCCGGCTATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCTAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCTAACTCCTCTGCTAATGCTGGAGTCATTGAAGATTATCTTGAGAAGAGTAAAGCTAACAAGGTAACTACCTATTCATATTGCCTTTGTCAAATGCTCTGTTTCAATACTTTGTGATGAAAATGTGTTTGGTCTCTGTTGGTGTTGAATTTTCATAGTATGTGAAATCAAAATATTCTTTTGGATTTGTATCTTAAACTAAAAGTATCTATAAGGTATGCTGAGGATCGAAACAGGGAGTTTAAGTCTTTAAGATTCACGTTGAATGTCATGCTGAAGTTTGAAGCTAAGGTTTTCAAAAGCCCTCCCATGATCAAGGCCAAAAGCCTTGAGCTTTTTTATTATTTGGAAAAGAAAAAAAAATGAAGTAATAATTAGGGTATTTCCTTGTCTATTGATTAAAAGAATCAAACTTCCTACGTCTAAATGCAAGTTTTTTTTTTTAGTTTTAGGGTTCTTTTTCCTTCTTATTTCTATTTCGTCTTTGTCTTCTCTTTCTTCATGTAGTACATTTATATCTAATGCAACTAAAAATTCAAGTTTTTCATGTTTCTAACCCTTTTATTGCGGTTTTCAACAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACCGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCCAAACAAAAGGTTTGTTCATAATTTTAGTTGTAATCGTTATCAGTTTTTTGAATTGTTGAAAATATGAGATGGGTTTTTGATTTGCTGAGTGCTAAGTTAGTTTTATGTTCTGTTTTTGATTGATGCAGAAAGTTCCATTTATAACTGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGAAGAGAGCCATTTTAAAGGCTTTGTATCCCTCACCACCATTACTCAGTCTTCCCCTTGTATCTAATTTTCAACTATTGATAAGTGTGAAATTTTATTGTTTGCCTTTTTTGGGGACATGTGTTCCTATACCATTGTTTTCTTTTCTCCCTTTGAGACCAAAAGAAGCAAAATGTGAAAGTAGAAACCCTAGACATCTATGCATTAACATTTGTTAGAATCCTTCCTCAATAAACATCATTATATGCATTTAATTAGGCCTAATGGAATTATCATGAGGAAGAGTGCACAAAACCTCAGGGAATTGGTGTGTTATTTACGTAAGCAAAAGAGGTATTCAGTGACAAATTTGAGAGAAAAGTTTGACAAATTATGCTGTGAACATAACAAAATTTTGATATAAGTCACGTAATCTATCAAAAATATAATATATCACTAATAGGATTTTGTCAACCATATACTCAATTATTAATAAAAGCTAATAAATAGGTTATG

mRNA sequence

TTGGGAGTGAGGAAATCTCACCTTATCCACACTCTCACCACAATCCCTTATCCATTTCCATCTCAACAAATCTCCTCTTTTATCAGATTCCCTCGTAATCTCGTTACCCCCCATTAACAACAACTGACCGCCATTAATTCCATTTCCAACTTTGTCCAATCACTTCCAAACCAATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGCGCTGGATCGGCCGACCTGAACTCTAAACTCACCGCCGTCCCTTCTGTTGCGTCCCCTGGGGTTGTGGGTTACAAGTTGCCGGCTATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCTAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCTAACTCCTCTGCTAATGCTGGAGTCATTGAAGATTATCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACCGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCCAAACAAAAGAAAGTTCCATTTATAACTGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGAAGAGAGCCATTTTAAAGGCTTTGTATCCCTCACCACCATTACTCAGTCTTCCCCTTGTATCTAATTTTCAACTATTGATAAGTGTGAAATTTTATTGTTTGCCTTTTTTGGGGACATGTGTTCCTATACCATTGTTTTCTTTTCTCCCTTTGAGACCAAAAGAAGCAAAATGTGAAAGTAGAAACCCTAGACATCTATGCATTAACATTTGTTAGAATCCTTCCTCAATAAACATCATTATATGCATTTAATTAGGCCTAATGGAATTATCATGAGGAAGAGTGCACAAAACCTCAGGGAATTGGTGTGTTATTTACGTAAGCAAAAGAGGTATTCAGTGACAAATTTGAGAGAAAAGTTTGACAAATTATGCTGTGAACATAACAAAATTTTGATATAAGTCACGTAATCTATCAAAAATATAATATATCACTAATAGGATTTTGTCAACCATATACTCAATTATTAATAAAAGCTAATAAATAGGTTATG

Coding sequence (CDS)

ATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGCGCTGGATCGGCCGACCTGAACTCTAAACTCACCGCCGTCCCTTCTGTTGCGTCCCCTGGGGTTGTGGGTTACAAGTTGCCGGCTATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCTAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCTAACTCCTCTGCTAATGCTGGAGTCATTGAAGATTATCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACCGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCCAAACAAAAGAAAGTTCCATTTATAACTGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

Protein sequence

MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW*

Homology

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BLAST of MELO3C008060 vs. Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-40
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKL-PAIRAQQARVPEAK-N 60
           MA MNSSVL C+YAI+G+GS +LN K+  V S    G     + P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  EGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARA 120
            GRR+A+++L ATLF+ AA ++  SANAGVI++YLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAVSA--SANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVEFGTCKFPENFTGCQDLAKQK 143
           +TV+FG+CKFPENFTGCQDLAKQK
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQK 142

[Close]

BLAST of MELO3C008060 vs. Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.8e-28
Identity = 72/114 (63.16%), Postives = 79/114 (69.30%), Query Frame = 1


Query: 29  AVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGV 88
           AVP  ASP           A++ +V  AK+  RR+ALL L A    AA AAS  SA A V
Sbjct: 16  AVPQSASPAA---------AKRVQVAPAKD--RRSALLGLAAVF--AATAASAGSARASV 75

Query: 89  IEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQK 143
            ++YLEKSK NKELNDKKR ATSGANFARAYTV+FG+CKFP NFTGCQDLAKQK
Sbjct: 76  FDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQK 116

[Close]

BLAST of MELO3C008060 vs. Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-23
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 80  SNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLA 139
           +  SA A + ++YLEKSKANKELNDKKRLATSGANFARAYTVEFG+C+FP NFTGCQDLA
Sbjct: 21  TTGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLA 80

Query: 140 KQK 143
           KQK
Sbjct: 81  KQK 83

[Close]

BLAST of MELO3C008060 vs. Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.3e-18
Identity = 58/109 (53.21%), Postives = 67/109 (61.47%), Query Frame = 1


Query: 45  AIRAQQARVPEAK-----------NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYL 104
           A+RAQ A+V  A+           +   R  LL LG  L AAA A +   ANAGV+ED L
Sbjct: 4   AMRAQCAKVQAARPARATTVVCRASAQSRRELLGLGVLLGAAALAPA---ANAGVVEDLL 63

Query: 105 EKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQK 143
            KS ANK LN+KKRLATS AN AR+ TV  GTC+FPENF GC++LA  K
Sbjct: 64  AKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNK 109

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BLAST of MELO3C008060 vs. TrEMBL
Match: A0A0A0KFM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 9.8e-70
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTA PSVASPGVVGYKLPAIRAQQ +VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGA+LFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQK 143
           VEFGTCKFPENFTGCQDLAKQK
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQK 142

[Close]

BLAST of MELO3C008060 vs. TrEMBL
Match: F6I0D9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.8e-55
Identity = 115/146 (78.77%), Postives = 128/146 (87.67%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA++NSSVLACNYAISGAG+ +LNSKL ++PS ASP V G KLPAIRAQQARV ++K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
             EGRR AL+YL ATLF  AAA  +SSANAGVI+DYLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  AGEGRRAALVYLAATLFTTAAA--SSSANAGVIDDYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQK 143
           RAYTV+FGTCKFPENFTGCQDLAK+K
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKKK 144

[Close]

BLAST of MELO3C008060 vs. TrEMBL
Match: G7JAX6_MEDTR (Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-53
Identity = 113/146 (77.40%), Postives = 125/146 (85.62%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA MNSSVLAC+YAISG+   +LN+KL +VPS ASPGV G KLP I+AQQ R+PEAK   
Sbjct: 1   MAAMNSSVLACSYAISGS---ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
            ++GRR AL  L ATLF  A +ASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQK 143
           RAYTV+FGTCKFPENFTGCQDLAKQK
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKQK 143

[Close]

BLAST of MELO3C008060 vs. TrEMBL
Match: A9PFK1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06420g PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.9e-53
Identity = 113/145 (77.93%), Postives = 126/145 (86.90%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA MNSSVLACNYAISG GS++LN+K+ ++P+VASP V G KLP IRAQQAR    +   
Sbjct: 1   MAAMNSSVLACNYAISGTGSSELNAKIVSMPAVASPVVSGPKLPIIRAQQARADSKEMKA 60

Query: 61  NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 120
           +EGRR AL+YL ATLF +AAAA  +SANAGVIEDYLEKSKANKELNDKKRLATSGANFAR
Sbjct: 61  SEGRRAALVYLAATLFTSAAAA--ASANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 120

Query: 121 AYTVEFGTCKFPENFTGCQDLAKQK 143
           AYTV+FGTCKFPENFTGCQDLAKQK
Sbjct: 121 AYTVQFGTCKFPENFTGCQDLAKQK 143

[Close]

BLAST of MELO3C008060 vs. TrEMBL
Match: A0A0S3QY87_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G076000 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.4e-52
Identity = 109/143 (76.22%), Postives = 126/143 (88.11%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAK-NE 60
           M+ MNSSVLACNYA SG   +DLN+KLT++PSVASP     KLP I+A QA+V E++ N+
Sbjct: 1   MSAMNSSVLACNYARSGC--SDLNAKLTSMPSVASPQASALKLPVIKAHQAKVTESESNQ 60

Query: 61  GRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAY 120
           GRR++L+YL ATLF AAAAASNSSANAG+IE+YLE+SK NKELNDKKRLAT+GANFARAY
Sbjct: 61  GRRSSLVYLAATLFTAAAAASNSSANAGIIEEYLERSKTNKELNDKKRLATTGANFARAY 120

Query: 121 TVEFGTCKFPENFTGCQDLAKQK 143
           TVEFGTCKFPENFTGCQDLAKQK
Sbjct: 121 TVEFGTCKFPENFTGCQDLAKQK 141

[Close]

BLAST of MELO3C008060 vs. TAIR10
Match: AT5G64040.2 (AT5G64040.2 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN))

HSP 1 Score: 174.5 bits (441), Expect = 4.9e-44
Identity = 92/147 (62.59%), Postives = 113/147 (76.87%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKL-PAIRAQQARVPEAK-N 60
           MA MNSSVL C+YAI+G+GS +LN K+  V S    G     + P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  EGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARA 120
            GRR+A+++L ATLF+ AA ++  SANAGVI++YLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAVSA--SANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVEFGTCKFPENFTGCQDLAKQKFHL 146
           +TV+FG+CKFPENFTGCQDLAKQKFHL
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQKFHL 145

[Close]

BLAST of MELO3C008060 vs. NCBI nr
Match: gi|659080932|ref|XP_008441057.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo])

HSP 1 Score: 277.7 bits (709), Expect = 1.2e-71
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQK 143
           VEFGTCKFPENFTGCQDLAKQK
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQK 142

[Close]

BLAST of MELO3C008060 vs. NCBI nr
Match: gi|449461859|ref|XP_004148659.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativus])

HSP 1 Score: 270.8 bits (691), Expect = 1.4e-69
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTA PSVASPGVVGYKLPAIRAQQ +VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGA+LFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQK 143
           VEFGTCKFPENFTGCQDLAKQK
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQK 142

[Close]

BLAST of MELO3C008060 vs. NCBI nr
Match: gi|359476926|ref|XP_003631913.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifera])

HSP 1 Score: 221.5 bits (563), Expect = 9.8e-55
Identity = 115/146 (78.77%), Postives = 128/146 (87.67%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA++NSSVLACNYAISGAG+ +LNSKL ++PS ASP V G KLPAIRAQQARV ++K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
             EGRR AL+YL ATLF  AAA  +SSANAGVI+DYLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  AGEGRRAALVYLAATLFTTAAA--SSSANAGVIDDYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQK 143
           RAYTV+FGTCKFPENFTGCQDLAK+K
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKKK 144

[Close]

BLAST of MELO3C008060 vs. NCBI nr
Match: gi|357464531|ref|XP_003602547.1| (photosystem I reaction center subunit N [Medicago truncatula])

HSP 1 Score: 217.2 bits (552), Expect = 1.9e-53
Identity = 113/146 (77.40%), Postives = 125/146 (85.62%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA MNSSVLAC+YAISG+   +LN+KL +VPS ASPGV G KLP I+AQQ R+PEAK   
Sbjct: 1   MAAMNSSVLACSYAISGS---ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
            ++GRR AL  L ATLF  A +ASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQK 143
           RAYTV+FGTCKFPENFTGCQDLAKQK
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKQK 143

[Close]

BLAST of MELO3C008060 vs. NCBI nr
Match: gi|743861697|ref|XP_011031185.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Populus euphratica])

HSP 1 Score: 217.2 bits (552), Expect = 1.9e-53
Identity = 114/145 (78.62%), Postives = 126/145 (86.90%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA MNSSVLACNYAISG GS++LN+K+ ++P+VASP V G KLP IRAQQAR    +   
Sbjct: 1   MAAMNSSVLACNYAISGTGSSELNAKIVSMPAVASPVVSGPKLPVIRAQQARADSKEMKA 60

Query: 61  NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 120
           +EGRR AL+YL ATLF +AAAA  SSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR
Sbjct: 61  SEGRRDALVYLAATLFTSAAAA--SSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 120

Query: 121 AYTVEFGTCKFPENFTGCQDLAKQK 143
           AYTV+FGTCKFPENFTGCQDLAKQK
Sbjct: 121 AYTVQFGTCKFPENFTGCQDLAKQK 143

The following BLAST results are available for this feature:

BLAST of MELO3C008060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAN_ARATH	1.1e-40	61.81	Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana G...	[more]
PSAN_HORVU	7.8e-28	63.16	Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSA...	[more]
PSAN_MAIZE	3.4e-23	80.95	Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN...	[more]
PSAN_VOLCA	7.3e-18	53.21	Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN...	[more]

BLAST of MELO3C008060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFM1_CUCSA	9.8e-70	96.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1	[more]
F6I0D9_VITVI	6.8e-55	78.77	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=...	[more]
G7JAX6_MEDTR	1.3e-53	77.40	Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 P...	[more]
A9PFK1_POPTR	2.9e-53	77.93	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06420g PE=2 SV=1	[more]
A0A0S3QY87_PHAAN	1.4e-52	76.22	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G076000 PE=...	[more]

BLAST of MELO3C008060 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64040.2	4.9e-44	62.59	photosystem I reaction center subunit PSI-N, chloroplast, putative /...	[more]

BLAST of MELO3C008060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080932\|ref\|XP_008441057.1\|	1.2e-71	100.00	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]	[more]
gi\|449461859\|ref\|XP_004148659.1\|	1.4e-69	96.48	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativ...	[more]
gi\|359476926\|ref\|XP_003631913.1\|	9.8e-55	78.77	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifer...	[more]
gi\|357464531\|ref\|XP_003602547.1\|	1.9e-53	77.40	photosystem I reaction center subunit N [Medicago truncatula]	[more]
gi\|743861697\|ref\|XP_011031185.1\|	1.9e-53	78.62	PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Populus ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008796	PSAN
IPR008796	PSAN

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009522	photosystem I

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0042651	thylakoid membrane
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU54808	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008060T2	MELO3C008060T2	mRNA
MELO3C008060T1	MELO3C008060T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU54808	MU54808	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	GENE3D	G3DSA:4.10.1190.10		coord: 87..171 score: 1.0
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PFAM	PF05479	PsaN	coord: 44..171 score: 2.4
None	No IPR available	PANTHER	PTHR36814	FAMILY NOT NAMED	coord: 2..171 score: 7.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008060	Csa6G483300	Cucumber (Chinese Long) v2	cumeB508
MELO3C008060	Cla008429	Watermelon (97103) v1	mewmB571
MELO3C008060	ClCG01G015380	Watermelon (Charleston Gray)	mewcgB516
MELO3C008060	Cla97C01G014340	Watermelon (97103) v2	mewmbB516
MELO3C008060	Bhi03G001038	Wax gourd	mewgoB654
MELO3C008060	CSPI06G26390	Wild cucumber (PI 183967)	cpimeB513
MELO3C008060	Cucsa.100880	Cucumber (Gy14) v1	cgymeB132
MELO3C008060	CmaCh03G010990	Cucurbita maxima (Rimu)	cmameB609
MELO3C008060	CmaCh07G008060	Cucurbita maxima (Rimu)	cmameB799
MELO3C008060	CmoCh07G008310	Cucurbita moschata (Rifu)	cmomeB783
MELO3C008060	CmoCh03G010840	Cucurbita moschata (Rifu)	cmomeB598
MELO3C008060	Lsi01G011580	Bottle gourd (USVL1VR-Ls)	lsimeB150
MELO3C008060	Cp4.1LG10g03660	Cucurbita pepo (Zucchini)	cpemeB069
MELO3C008060	Cp4.1LG19g12170	Cucurbita pepo (Zucchini)	cpemeB458
MELO3C008060	CsGy6G025880	Cucumber (Gy14) v2	cgybmeB446
MELO3C008060	Carg05317	Silver-seed gourd	carmeB0806
MELO3C008060	Carg10530	Silver-seed gourd	carmeB0242
MELO3C008060	CsaV3_6G041600	Cucumber (Chinese Long) v3	cucmeB521

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None