Cla008429 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008429
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Photosystem I reaction center subunit N (AHRD V1 ***- F4YFE2_CAMSI); contains Interpro domain(s) IPR008796 Photosystem I reaction centre subunit N
Location	Chr1 : 9414416 .. 9415588 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGAGCTGGGTCAGCTGACCTGAACTCCAAACTCACCGCCGTCCCTTCTGTTGCGTCTCCTGGGGTTGTGGGATACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCTGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGTAACTGTACATAAAAGTTCAAATTGCTTTTATCGCTCTGTTTCCATACTTGAGTTAGCATAAAATGATAAGAATATGAAACAGAAATGGGGGATTTGTATGGGTTTGATGTGATGATATAGTATTAAATTCTTCTTTATCCATTAGCTTAAATTTTTGAGTTAATTGGTGATTTAAGATGGGATCTACAACCTTATATGTCTTCTCTAATTAATATTGATTTTTCACTTATTGAGTCTTCTACATATTTCAAACCTACAAATGTAGGGAGTGTTAGCTTTTGGGTCAATCAGTGATTTAAGAGTATCTTAAACTAAAAGTATGTATCACGTATGCTGAAGACAAAAAACAGGGAGTATGTCTTTAACATTCATGTTCAATGTTATGCTGATTGCTGAAGTTTGAAGCTGAGGACTAATATAGAAATAGAGTGTTTCAAAGTATAGGGAAATGGATCAAAGTAAAGGGACTGAATCAGGATTTAGATGGAAAAAACCTTAATGTTTGTAACCTGCTATTGCAATTTTCAACAGGAGTTGAATGACAAGAAACGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGGTTTGGACATAGGTTTAGTTGTAAATTGTAATCACGATTGGTTCTTTTTCTAAATGCTGACAATATGAGTTGAGTTTTTGCTGAGTACTAAGTTAGTTCTCTGTTCTGTTTTTGATTGATGCAGAAAGTTCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGTAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

mRNA sequence

ATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGAGCTGGGTCAGCTGACCTGAACTCCAAACTCACCGCCGTCCCTTCTGTTGCGTCTCCTGGGGTTGTGGGATACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCTGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGAGTTGAATGACAAGAAACGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGAAAGTTCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGTAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

Coding sequence (CDS)

ATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGAGCTGGGTCAGCTGACCTGAACTCCAAACTCACCGCCGTCCCTTCTGTTGCGTCTCCTGGGGTTGTGGGATACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCTGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGAGTTGAATGACAAGAAACGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGAAAGTTCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGTAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

Protein sequence

MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW

Homology

[Close]

BLAST of Cla008429 vs. Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 228.4 bits (581), Expect = 5.9e-59
Identity = 115/173 (66.47%), Postives = 138/173 (79.77%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKL-PAIRAQQARVPEAK-N 60
           MA MNSSVL C+YAI+G+GS +LN K+  V S    G     + P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  EGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARA 120
            GRR+A+++L ATLF+ AA ++  SANAGVI++YLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAVSA--SANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           +TV+FG+CKFPENFTGCQDLAKQKKVPFIS+D+ LECEGKDKYKCGSNVFWKW
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Cla008429 vs. Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.7e-46
Identity = 97/143 (67.83%), Postives = 108/143 (75.52%), Query Frame = 1


Query: 29  AVPSVASPGVVGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGV 88
           AVP  ASP           A++ +V  AK+  RR+ALL L A    AA AAS  SA A V
Sbjct: 16  AVPQSASPAA---------AKRVQVAPAKD--RRSALLGLAAVF--AATAASAGSARASV 75

Query: 89  IEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFIS 148
            ++YLEKSK NKELNDKKR ATSGANFARAYTV+FG+CKFP NFTGCQDLAKQKKVPFI+
Sbjct: 76  FDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFIT 135

Query: 149 DDLELECEGKDKYKCGSNVFWKW 172
           DDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 136 DDLEIECEGKEKFKCGSNVFWKW 145

[Close]

BLAST of Cla008429 vs. Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 77/92 (83.70%), Postives = 84/92 (91.30%), Query Frame = 1


Query: 80  SNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLA 139
           +  SA A + ++YLEKSKANKELNDKKRLATSGANFARAYTVEFG+C+FP NFTGCQDLA
Sbjct: 21  TTGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLA 80

Query: 140 KQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           KQKKVPFISDDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 81  KQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112

[Close]

BLAST of Cla008429 vs. Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-26
Identity = 71/132 (53.79%), Postives = 85/132 (64.39%), Query Frame = 1


Query: 45  AIRAQQARVPEAK-----------NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYL 104
           A+RAQ A+V  A+           +   R  LL LG  L AAA A +   ANAGV+ED L
Sbjct: 4   AMRAQCAKVQAARPARATTVVCRASAQSRRELLGLGVLLGAAALAPA---ANAGVVEDLL 63

Query: 105 EKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLEL 164
            KS ANK LN+KKRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I++DL++
Sbjct: 64  AKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKI 123

Query: 165 ECEGKDKYKCGS 166
           ECEGKD   CGS
Sbjct: 124 ECEGKDAKSCGS 132

[Close]

BLAST of Cla008429 vs. TrEMBL
Match: A0A0A0KFM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 5.0e-89
Identity = 165/171 (96.49%), Postives = 169/171 (98.83%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTA PSVASPGVVGYKLPAIRAQQ +VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGA+LFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Cla008429 vs. TrEMBL
Match: F6I0D9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.7e-73
Identity = 141/175 (80.57%), Postives = 157/175 (89.71%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA++NSSVLACNYAISGAG+ +LNSKL ++PS ASP V G KLPAIRAQQARV ++K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
             EGRR AL+YL ATLF  AAA  +SSANAGVI+DYLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  AGEGRRAALVYLAATLFTTAAA--SSSANAGVIDDYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           RAYTV+FGTCKFPENFTGCQDLAK+KKVPF+S+DLELECEG+DKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRDKYKCGSNVFWKW 173

[Close]

BLAST of Cla008429 vs. TrEMBL
Match: G7JAX6_MEDTR (Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.9e-72
Identity = 140/175 (80.00%), Postives = 154/175 (88.00%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA MNSSVLAC+YAISG+   +LN+KL +VPS ASPGV G KLP I+AQQ R+PEAK   
Sbjct: 1   MAAMNSSVLACSYAISGS---ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
            ++GRR AL  L ATLF  A +ASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           RAYTV+FGTCKFPENFTGCQDLAKQKKVPFI++DLELECEGKDKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172

[Close]

BLAST of Cla008429 vs. TrEMBL
Match: A0A0L9TJG3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g016500 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 5.5e-72
Identity = 137/172 (79.65%), Postives = 155/172 (90.12%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAK-NE 60
           M+ MNSSVLACNYA SG   +DLN+KLT++PSVASP     KLP I+A QA+V E++ N+
Sbjct: 1   MSAMNSSVLACNYARSGC--SDLNAKLTSMPSVASPQASALKLPVIKAHQAKVTESESNQ 60

Query: 61  GRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAY 120
           GRR++L+YL ATLF AAAAASNSSANAG+IE+YLE+SK NKELNDKKRLAT+GANFARAY
Sbjct: 61  GRRSSLVYLAATLFTAAAAASNSSANAGIIEEYLERSKTNKELNDKKRLATTGANFARAY 120

Query: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           TVEFGTCKFPENFTGCQDLAKQKKVPF+SDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFLSDDLELECEGKDKYKCGSNVFWKW 170

[Close]

BLAST of Cla008429 vs. TrEMBL
Match: A0A0S3QY87_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G076000 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 5.5e-72
Identity = 137/172 (79.65%), Postives = 155/172 (90.12%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAK-NE 60
           M+ MNSSVLACNYA SG   +DLN+KLT++PSVASP     KLP I+A QA+V E++ N+
Sbjct: 1   MSAMNSSVLACNYARSGC--SDLNAKLTSMPSVASPQASALKLPVIKAHQAKVTESESNQ 60

Query: 61  GRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAY 120
           GRR++L+YL ATLF AAAAASNSSANAG+IE+YLE+SK NKELNDKKRLAT+GANFARAY
Sbjct: 61  GRRSSLVYLAATLFTAAAAASNSSANAGIIEEYLERSKTNKELNDKKRLATTGANFARAY 120

Query: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           TVEFGTCKFPENFTGCQDLAKQKKVPF+SDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFLSDDLELECEGKDKYKCGSNVFWKW 170

[Close]

BLAST of Cla008429 vs. NCBI nr
Match: gi|659080932|ref|XP_008441057.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 5.8e-91
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Cla008429 vs. NCBI nr
Match: gi|449461859|ref|XP_004148659.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 7.1e-89
Identity = 165/171 (96.49%), Postives = 169/171 (98.83%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSADLNSKLTA PSVASPGVVGYKLPAIRAQQ +VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALLYLGA+LFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           VEFGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Cla008429 vs. NCBI nr
Match: gi|359476926|ref|XP_003631913.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifera])

HSP 1 Score: 283.5 bits (724), Expect = 2.5e-73
Identity = 141/175 (80.57%), Postives = 157/175 (89.71%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA++NSSVLACNYAISGAG+ +LNSKL ++PS ASP V G KLPAIRAQQARV ++K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
             EGRR AL+YL ATLF  AAA  +SSANAGVI+DYLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  AGEGRRAALVYLAATLFTTAAA--SSSANAGVIDDYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           RAYTV+FGTCKFPENFTGCQDLAK+KKVPF+S+DLELECEG+DKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRDKYKCGSNVFWKW 173

[Close]

BLAST of Cla008429 vs. NCBI nr
Match: gi|743861697|ref|XP_011031185.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Populus euphratica])

HSP 1 Score: 280.4 bits (716), Expect = 2.1e-72
Identity = 142/174 (81.61%), Postives = 154/174 (88.51%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA MNSSVLACNYAISG GS++LN+K+ ++P+VASP V G KLP IRAQQAR    +   
Sbjct: 1   MAAMNSSVLACNYAISGTGSSELNAKIVSMPAVASPVVSGPKLPVIRAQQARADSKEMKA 60

Query: 61  NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 120
           +EGRR AL+YL ATLF +AAAA  SSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR
Sbjct: 61  SEGRRDALVYLAATLFTSAAAA--SSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 120

Query: 121 AYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           AYTV+FGTCKFPENFTGCQDLAKQKKVPFISDDL LECEGKDKYKCGSNVFWKW
Sbjct: 121 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 172

[Close]

BLAST of Cla008429 vs. NCBI nr
Match: gi|357464531|ref|XP_003602547.1| (photosystem I reaction center subunit N [Medicago truncatula])

HSP 1 Score: 280.0 bits (715), Expect = 2.7e-72
Identity = 140/175 (80.00%), Postives = 154/175 (88.00%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAK--- 60
           MA MNSSVLAC+YAISG+   +LN+KL +VPS ASPGV G KLP I+AQQ R+PEAK   
Sbjct: 1   MAAMNSSVLACSYAISGS---ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 60

Query: 61  -NEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFA 120
            ++GRR AL  L ATLF  A +ASNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           RAYTV+FGTCKFPENFTGCQDLAKQKKVPFI++DLELECEGKDKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172

The following BLAST results are available for this feature:

BLAST of Cla008429 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAN_ARATH	5.9e-59	66.47	Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana G...	[more]
PSAN_HORVU	5.7e-46	67.83	Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSA...	[more]
PSAN_MAIZE	1.1e-41	83.70	Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN...	[more]
PSAN_VOLCA	1.3e-26	53.79	Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN...	[more]

BLAST of Cla008429 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFM1_CUCSA	5.0e-89	96.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1	[more]
F6I0D9_VITVI	1.7e-73	80.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=...	[more]
G7JAX6_MEDTR	1.9e-72	80.00	Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 P...	[more]
A0A0L9TJG3_PHAAN	5.5e-72	79.65	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g016500 PE=4 SV=1	[more]
A0A0S3QY87_PHAAN	5.5e-72	79.65	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G076000 PE=...	[more]

BLAST of Cla008429 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080932\|ref\|XP_008441057.1\|	5.8e-91	99.42	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]	[more]
gi\|449461859\|ref\|XP_004148659.1\|	7.1e-89	96.49	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativ...	[more]
gi\|359476926\|ref\|XP_003631913.1\|	2.5e-73	80.57	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifer...	[more]
gi\|743861697\|ref\|XP_011031185.1\|	2.1e-72	81.61	PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Populus ...	[more]
gi\|357464531\|ref\|XP_003602547.1\|	2.7e-72	80.00	photosystem I reaction center subunit N [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008796	PSAN

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0030093	chloroplast photosystem I
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016491	oxidoreductase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU07841	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008429	Cla008429.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU07841	WMU07841	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	GENE3D	G3DSA:4.10.1190.10		coord: 87..171 score: 2.7
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PFAM	PF05479	PsaN	coord: 44..171 score: 1.4
None	No IPR available	PANTHER	PTHR36814	FAMILY NOT NAMED	coord: 2..171 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla008429	Cla97C01G014340	Watermelon (97103) v2	wmwmbB244
Cla008429	Csa6G483300	Cucumber (Chinese Long) v2	cuwmB502
Cla008429	MELO3C008060	Melon (DHL92) v3.5.1	mewmB571
Cla008429	ClCG01G015380	Watermelon (Charleston Gray)	wcgwmB153
Cla008429	CSPI06G26390	Wild cucumber (PI 183967)	cpiwmB521
Cla008429	Cucsa.100880	Cucumber (Gy14) v1	cgywmB137
Cla008429	CmaCh03G010990	Cucurbita maxima (Rimu)	cmawmB629
Cla008429	CmaCh07G008060	Cucurbita maxima (Rimu)	cmawmB824
Cla008429	CmoCh03G010840	Cucurbita moschata (Rifu)	cmowmB620
Cla008429	CmoCh07G008310	Cucurbita moschata (Rifu)	cmowmB814
Cla008429	Lsi01G011580	Bottle gourd (USVL1VR-Ls)	lsiwmB142
Cla008429	Cp4.1LG10g03660	Cucurbita pepo (Zucchini)	cpewmB075
Cla008429	Cp4.1LG19g12170	Cucurbita pepo (Zucchini)	cpewmB483
Cla008429	CsGy6G025880	Cucumber (Gy14) v2	cgybwmB469
Cla008429	MELO3C008060.2	Melon (DHL92) v3.6.1	medwmB560
Cla008429	Carg10530	Silver-seed gourd	carwmB0226
Cla008429	Carg05317	Silver-seed gourd	carwmB0803
Cla008429	CsaV3_6G041600	Cucumber (Chinese Long) v3	cucwmB527
Cla008429	Bhi03G001038	Wax gourd	wgowmB433

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None